>MMT1_HORVU (Q9MBC2) Methionine S-methyltransferase (EC 2.1.1.12) (AdoMet:Met|
            S-methyltransferase) (Hv-MMT1)
          Length = 1088

 Score =  134 bits (338), Expect = 4e-32
 Identities = 64/64 (100%), Positives = 64/64 (100%)
 Frame = -3

Query: 340  GKLDSHNMREALLRSTGLCISSSGWTGVPDYCRFSFALESGDFDRAMECIARFRELVLGG 161
            GKLDSHNMREALLRSTGLCISSSGWTGVPDYCRFSFALESGDFDRAMECIARFRELVLGG
Sbjct: 1021 GKLDSHNMREALLRSTGLCISSSGWTGVPDYCRFSFALESGDFDRAMECIARFRELVLGG 1080

Query: 160  GAKV 149
            GAKV
Sbjct: 1081 GAKV 1084

>MMT1_MAIZE (Q8W519) Methionine S-methyltransferase (EC 2.1.1.12) (AdoMet:Met|
            S-methyltransferase)
          Length = 1091

 Score =  102 bits (254), Expect = 2e-22
 Identities = 45/60 (75%), Positives = 55/60 (91%)
 Frame = -3

Query: 340  GKLDSHNMREALLRSTGLCISSSGWTGVPDYCRFSFALESGDFDRAMECIARFRELVLGG 161
            G+LD+ N+REA+LR+TGLCI+SS WTG+P YCRFSFALE G+F+RAM CIARF+ELVLGG
Sbjct: 1026 GELDASNIREAILRATGLCINSSSWTGIPGYCRFSFALERGEFERAMGCIARFKELVLGG 1085

>MMT1_WOLBI (Q9SWR3) Methionine S-methyltransferase (EC 2.1.1.12) (AdoMet:Met|
            S-methyltransferase)
          Length = 1088

 Score = 92.0 bits (227), Expect = 3e-19
 Identities = 38/56 (67%), Positives = 48/56 (85%)
 Frame = -3

Query: 337  KLDSHNMREALLRSTGLCISSSGWTGVPDYCRFSFALESGDFDRAMECIARFRELV 170
            KLD  N+REA+LR+TGLCI+   WTG+PDYCRF+FALE GDFDRA++CI +F +LV
Sbjct: 1032 KLDGTNIREAMLRATGLCINGPSWTGIPDYCRFTFALEDGDFDRALDCIVKFNQLV 1087

>MMT1_ARATH (Q9LTB2) Methionine S-methyltransferase (EC 2.1.1.12) (AdoMet:Met|
            S-methyltransferase)
          Length = 1071

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 29/56 (51%), Positives = 42/56 (75%)
 Frame = -3

Query: 337  KLDSHNMREALLRSTGLCISSSGWTGVPDYCRFSFALESGDFDRAMECIARFRELV 170
            +L   NMR+  L  TG+C++S  WTG+P YCRFSFALE  +FD+A+E IA+F+ ++
Sbjct: 1014 ELTDSNMRDVFLSHTGVCLNSGSWTGIPGYCRFSFALEDSEFDKAIESIAQFKSVL 1069

>NMDE3_HUMAN (Q14957) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
           (N-methyl D-aspartate receptor subtype 2C) (NR2C)
           (NMDAR2C)
          Length = 1233

 Score = 26.9 bits (58), Expect(2) = 2.5
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +1

Query: 166 QGPAP*TGRCTPWPGRSRRSPEQS*SGSSPAPLSTRCC 279
           + P P TG C P     RR    + S    AP +  CC
Sbjct: 417 ESPDPGTGGCVPNTVPCRRQSNHTFSSGDVAPYTKLCC 454



 Score = 20.8 bits (42), Expect(2) = 2.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 128 QPLVATIHLSTATKDQLP 181
           QP+V + HL+ AT ++ P
Sbjct: 395 QPVVDSRHLTVATLEERP 412

>TISD_MOUSE (P23949) Butyrate response factor 2 (TIS11D protein)|
          Length = 367

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 214 SRRSPEQS*SGSSPAPLSTRCC*CTARWTSGGLPSCCGCPA 336
           SR  P  S S SS +  ++ C   +A  T  G P+CC   A
Sbjct: 260 SRTPPPPSSSASSCSSSASSCSSASAASTPSGAPTCCATAA 300

>TAF2_YEAST (P23255) Transcription initiation factor TFIID subunit 2|
           (TBP-associated factor 2) (TBP-associated factor 150
           kDa) (TAFII-150) (TSM-1)
          Length = 1407

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 256 PDYCRFSFALESGDFDRAMECIARFRELVLGGGAK 152
           PDY   S   + GD +  +E I  + ++V+ GG K
Sbjct: 860 PDYMFSSQLRQDGDIEAQLEAIRYYEDVVVNGGVK 894

>LCMT1_ASPFU (Q4WS57) Leucine carboxyl methyltransferase 1 (EC 2.1.1.-) (Protein|
           phosphatase methyltransferase 1)
          Length = 398

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
 Frame = +2

Query: 134 LVATIHLSTATKDQLPEPGDALHG------PVEVAALQSKAEAAVVRHP 262
           L  T+ L +A    +P+ GDALH       PV++  L +   A   R P
Sbjct: 169 LQRTLGLGSAQNVAIPDSGDALHSPTYHLHPVDLRTLAASGSATTSRSP 217

>HLX1_HUMAN (Q14774) Homeobox protein HLX1 (Homeobox protein HB24)|
          Length = 488

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +1

Query: 112 HLTHPTTPSCYHSP*HRHQGPAP*TGRCTPWPGRSRRSPEQS*SGSSPAPLS 267
           H  HP        P  +   P P  G   P    +R  P    SGS+PAP S
Sbjct: 120 HHHHPQQQQQQQQPQQQQPPPPPRAGALQPPASGTRVVPNPHHSGSAPAPSS 171

>ALKH_DICD3 (P38448) KHG/KDPG aldolase [Includes: 4-hydroxy-2-oxoglutarate|
           aldolase (EC 4.1.3.16) (2-keto-4-hydroxyglutarate
           aldolase) (KHG-aldolase);
           2-dehydro-3-deoxy-phosphogluconate aldolase (EC
           4.1.2.14) (Phospho-2-dehydro-3-deoxygluconate aldolase)
          Length = 213

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 23/62 (37%), Positives = 28/62 (45%)
 Frame = -3

Query: 340 GKLDSHNMREALLRSTGLCISSSGWTGVPDYCRFSFALESGDFDRAMECIARFRELVLGG 161
           G +   N R+ L   + LC+  S W    D      ALESGD+DR     A  RE V G 
Sbjct: 162 GGISLKNYRDYLALKSVLCVGGS-WLVPAD------ALESGDYDR---ITALAREAVAGA 211

Query: 160 GA 155
            A
Sbjct: 212 TA 213

>IDI2_KITGR (Q9KWF6) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP|
           isomerase) (Isopentenyl pyrophosphate isomerase)
          Length = 364

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
 Frame = +2

Query: 47  SCSNRQRKIRVGSPSGFTVSSPT*PTQ-----------QPLVATIHLSTATKDQLPEPGD 193
           SC++  R +R  +P GF +++                 +     IHL+TA +  +PE GD
Sbjct: 103 SCADTFRVLRTENPDGFVMANVNATASVDNARRAVDLIEANALQIHLNTAQETPMPE-GD 161

Query: 194 ALHG--PVEVAALQSKAEAAVV 253
              G  P ++A + +  +  V+
Sbjct: 162 RSFGSWPAQIAKITAAVDVPVI 183

>CJ078_MOUSE (Q8BP27) Protein C10orf78 homolog|
          Length = 319

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 124 PTTPSCYHSP*HRHQGPAP*TGRCTPWPGRSRRSPEQS*SGSSP 255
           P+ P+   +P  R   P+P T    P P  +  SP  + SG  P
Sbjct: 82  PSPPTSPAAPQPRENPPSPPTSPAAPQPRENPPSPHSNSSGKQP 125

>NMDE3_MOUSE (Q01098) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
           (N-methyl D-aspartate receptor subtype 2C) (NR2C)
           (NMDAR2C)
          Length = 1239

 Score = 25.0 bits (53), Expect(2) = 8.6
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +1

Query: 166 QGPAP*TGRCTPWPGRSRRSPEQS*SGSSPAPLSTRCC 279
           + P P TG C P     RR    + S     P +  CC
Sbjct: 417 ESPDPGTGGCVPNTVPCRRQSNHTFSSGDITPYTKLCC 454



 Score = 20.8 bits (42), Expect(2) = 8.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 128 QPLVATIHLSTATKDQLP 181
           QP+V + HL+ AT ++ P
Sbjct: 395 QPVVDSRHLTVATLEERP 412

>NMDE3_RAT (Q00961) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
           (N-methyl D-aspartate receptor subtype 2C) (NR2C)
           (NMDAR2C)
          Length = 1237

 Score = 25.0 bits (53), Expect(2) = 8.6
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +1

Query: 166 QGPAP*TGRCTPWPGRSRRSPEQS*SGSSPAPLSTRCC 279
           + P P TG C P     RR    + S     P +  CC
Sbjct: 417 ESPDPGTGGCVPNTVPCRRQSNHTFSSGDLTPYTKLCC 454



 Score = 20.8 bits (42), Expect(2) = 8.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 128 QPLVATIHLSTATKDQLP 181
           QP+V + HL+ AT ++ P
Sbjct: 395 QPVVDSRHLTVATLEERP 412

>SM41_HEMPU (Q26264) 41 kDa spicule matrix protein precursor (HSM41) (HPSMC)|
          Length = 407

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -2

Query: 326 PQHEGSPPEVHRAVH*QQRVDRGAGLLPLQLCSGERRLRPGHGVHRPVQGAGPWW 162
           P   G+PP     V+ Q  +    G  P+        +RPG G  +  QG GP W
Sbjct: 128 PPRPGAPPSRAWPVNPQNPMSGPPGRAPVMKRQNPP-VRPGQGGRQIPQGVGPQW 181

>RTN2_MOUSE (O70622) Reticulon-2 (Neuroendocrine-specific protein-like 1)|
           (NSP-like protein 1) (NSPLI)
          Length = 471

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +2

Query: 5   QEIQRFYSFFDSKQSCSNRQRKI-RVGSPSGFTVSSPT*PTQQPLVATIHLSTATKDQLP 181
           +E+   Y  FD       R+  + R   P G +VS P  P QQ  +     S  +  Q P
Sbjct: 60  RELTFSYIAFDGVVGSGGRRDSVVRRPRPQGRSVSEPRDPPQQSGLGDSLESIPSLSQSP 119

Query: 182 EPG 190
           EPG
Sbjct: 120 EPG 122

>PEP3_SCHPO (O74925) Vacuolar membrane protein pep3 (Vacuolar protein sorting|
           18)
          Length = 900

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -3

Query: 229 LESGDFDRAMEC--IARFRELVLGGGAK 152
           LE GDF++A+EC   A+ R  VL G A+
Sbjct: 384 LEKGDFEKALECANTAKVRNTVLVGYAE 411

>PST1_YEAST (Q12355) Protoplast secreted protein 1 precursor|
          Length = 444

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
 Frame = -3

Query: 310 ALLRSTGLCISS-----SGWTGVPDYCRFSF---ALESGDFDRAMECIARFRELVLGGGA 155
           +L+ ST L I+S     S  + +P  C  S    A    D D+   C      L +GGG 
Sbjct: 5   SLIASTALLITSALAATSSSSSIPSSCTISSHATATAQSDLDKYSRCDTLVGNLTIGGGL 64

Query: 154 K 152
           K
Sbjct: 65  K 65

>HMH2_DROME (P10035) Homeobox protein H2.0|
          Length = 418

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 226 PEQS*SGSSPAPLSTRCC*CTARWTSGGLPSCCGCPAC 339
           PE+S   SS +P +  CC        G + +CC  P C
Sbjct: 84  PEESHRQSSSSPSTKSCC-------DGSILACCSFPHC 114


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,749,243
Number of Sequences: 219361
Number of extensions: 891259
Number of successful extensions: 2604
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2600
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)