ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl05a07 |
|---|---|
| Clone Library Name | barley_pub |
>CXCR4_RAT (O08565) C-X-C chemokine receptor type 4 (CXC-R4) (CXCR-4) (Stromal| cell-derived factor 1 receptor) (SDF-1 receptor) (Fusin) (Leukocyte-derived seven transmembrane domain receptor) (LESTR) (CD184 antigen) Length = 349 Score = 29.3 bits (64), Expect = 2.3 Identities = 21/84 (25%), Positives = 32/84 (38%) Frame = -3 Query: 274 NENHHHLFQTGN*GVPCTVYVFVKLLGVVFKGAVILKARPALQDQAWKIRGNGDGISHHR 95 NEN + +F T+Y + L G+V G VIL + K+R D H Sbjct: 30 NENFNRIFLP-------TIYFIIFLTGIVGNGLVIL-----VMGYQKKLRSMTDKYRLHL 77 Query: 94 *VPSKIICLAMCTWKIQICCQWQF 23 V + + + W + W F Sbjct: 78 SVADLLFVITLPFWAVDAMADWYF 101
>CXCR4_SHEEP (Q28553) C-X-C chemokine receptor type 4 (CXC-R4) (CXCR-4) (SDF-1| receptor) (Stromal cell-derived factor 1 receptor) (Fusin) (Leukocyte-derived seven transmembrane domain receptor) (LESTR) (CD184 antigen) (Fragment) Length = 192 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/67 (28%), Positives = 26/67 (38%) Frame = -3 Query: 223 TVYVFVKLLGVVFKGAVILKARPALQDQAWKIRGNGDGISHHR*VPSKIICLAMCTWKIQ 44 TVY + L G+V G VIL + K+R D H V + L + W + Sbjct: 33 TVYSIIFLTGIVGNGLVIL-----VMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVD 87 Query: 43 ICCQWQF 23 W F Sbjct: 88 AVANWYF 94
>CXCR4_FELCA (P56498) C-X-C chemokine receptor type 4 (CXC-R4) (CXCR-4) (SDF-1| receptor) (Stromal cell-derived factor 1 receptor) (Fusin) (LESTR) (CD184 antigen) Length = 353 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/67 (28%), Positives = 26/67 (38%) Frame = -3 Query: 223 TVYVFVKLLGVVFKGAVILKARPALQDQAWKIRGNGDGISHHR*VPSKIICLAMCTWKIQ 44 TVY + L G+V G VIL + K+R D H V + L + W + Sbjct: 44 TVYSIIFLTGIVGNGLVIL-----VMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVD 98 Query: 43 ICCQWQF 23 W F Sbjct: 99 AVANWYF 105
>CXCR4_BOVIN (P25930) C-X-C chemokine receptor type 4 (CXC-R4) (CXCR-4) (SDF-1| receptor) (Stromal cell-derived factor 1 receptor) (Fusin) (Leukocyte-derived seven transmembrane domain receptor) (LESTR) (LCR1) (CD184 antigen) Length = 353 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/67 (28%), Positives = 26/67 (38%) Frame = -3 Query: 223 TVYVFVKLLGVVFKGAVILKARPALQDQAWKIRGNGDGISHHR*VPSKIICLAMCTWKIQ 44 TVY + L G+V G VIL + K+R D H V + L + W + Sbjct: 44 TVYSIIFLTGIVGNGLVIL-----VMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVD 98 Query: 43 ICCQWQF 23 W F Sbjct: 99 AVANWYF 105
>VE1_HPV40 (P36727) Replication protein E1 (EC 3.6.1.-) (ATP-dependent| helicase E1) Length = 647 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/41 (31%), Positives = 21/41 (51%) Frame = +1 Query: 271 HLEPRFPNVQIIKQQMLNVHLYGNSRRFSLIMFSELKRSFE 393 H PR +++ K + LN LYG + + F +L R F+ Sbjct: 188 HCSPRTQLIELFKCKDLNAKLYGKFKELYGVGFGDLVRQFK 228
>PCSK4_MOUSE (P29121) Proprotein convertase subtilisin/kexin type 4 precursor| (EC 3.4.21.-) (PC4) (Neuroendocrine convertase 3) (NEC 3) (Prohormone convertase 3) (KEX2-like endoprotease 3) Length = 655 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = -3 Query: 175 VILKARPA-LQDQAWKIRGNGDGISHH 98 V+ +RPA LQ + W+I G G +SHH Sbjct: 399 VVRASRPAQLQAEDWRINGVGRQVSHH 425
>PCSK4_RAT (Q78EH2) Proprotein convertase subtilisin/kexin type 4 precursor| (EC 3.4.21.-) (PC4) (Neuroendocrine convertase 3) (NEC 3) (Prohormone convertase 3) (KEX2-like endoprotease 3) Length = 678 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = -3 Query: 175 VILKARPA-LQDQAWKIRGNGDGISHH 98 V+ +RPA LQ + W+I G G +SHH Sbjct: 399 VVRASRPAQLQAEDWRINGVGRQVSHH 425
>SHCBP_HUMAN (Q8NEM2) SHC SH2 domain-binding protein 1| Length = 672 Score = 27.7 bits (60), Expect = 6.8 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = -1 Query: 324 IQHLLFYYLNIWETW 280 I+H+ F+Y NIW +W Sbjct: 195 IEHVRFFYQNIWRSW 209
>CXCR4_MOUSE (P70658) C-X-C chemokine receptor type 4 (CXC-R4) (CXCR-4) (Stromal| cell-derived factor 1 receptor) (SDF-1 receptor) (Fusin) (Leukocyte-derived seven transmembrane domain receptor) (LESTR) (Pre-B-cell-derived chemokine receptor) (PB-CKR) (CD1 Length = 359 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/67 (25%), Positives = 26/67 (38%) Frame = -3 Query: 223 TVYVFVKLLGVVFKGAVILKARPALQDQAWKIRGNGDGISHHR*VPSKIICLAMCTWKIQ 44 T+Y + L G+V G VIL + K+R D H V + + + W + Sbjct: 45 TIYFIIFLTGIVGNGLVIL-----VMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVD 99 Query: 43 ICCQWQF 23 W F Sbjct: 100 AMADWYF 106
>MRAY_CHLTR (O84762) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 336 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = -1 Query: 315 LLFYYLNIWETWFQMKTIIISSKLG 241 LL + + +W TWF + TI++ LG Sbjct: 73 LLLFPIQLWSTWFCIGTILLWGALG 97
>MRAY_CHLTA (Q3KKT5) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 336 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = -1 Query: 315 LLFYYLNIWETWFQMKTIIISSKLG 241 LL + + +W TWF + TI++ LG Sbjct: 73 LLLFPIQLWSTWFCIGTILLWGALG 97
>NUOL_RICPR (Q9ZCG1) NADH-quinone oxidoreductase chain L (EC 1.6.99.5) (NADH| dehydrogenase I, chain L) (NDH-1, chain L) Length = 653 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = -3 Query: 361 SN*TACCFRINVHSTFVVLLSEHLGNVVPNENHHHLFQTG 242 S+ + F + H+ F LL GNV+ N H++F+ G Sbjct: 332 SSYNSAIFHLVTHAFFKALLFLSAGNVIHAVNEHNIFKMG 371
>ILVD_DEIRA (Q9RV97) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 607 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -3 Query: 286 NVVPNENHHHLFQTGN*GVPCTVYVF 209 +VV NENHH ++ G+P TV+ F Sbjct: 365 DVVRNENHHEFYRAAPGGIP-TVFAF 389
>CXCR4_PAPAN (P56491) C-X-C chemokine receptor type 4 (CXC-R4) (CXCR-4) (SDF-1| receptor) (Stromal cell-derived factor 1 receptor) (Fusin) (CD184 antigen) Length = 352 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/67 (25%), Positives = 26/67 (38%) Frame = -3 Query: 223 TVYVFVKLLGVVFKGAVILKARPALQDQAWKIRGNGDGISHHR*VPSKIICLAMCTWKIQ 44 T+Y + L G+V G VIL + K+R D H V + + + W + Sbjct: 43 TIYSIIFLTGIVGNGLVIL-----VMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVD 97 Query: 43 ICCQWQF 23 W F Sbjct: 98 AVANWYF 104
>CXCR4_PANTR (P61072) C-X-C chemokine receptor type 4 (CXC-R4) (CXCR-4) (SDF-1| receptor) (Stromal cell-derived factor 1 receptor) (Fusin) (CD184 antigen) Length = 352 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/67 (25%), Positives = 26/67 (38%) Frame = -3 Query: 223 TVYVFVKLLGVVFKGAVILKARPALQDQAWKIRGNGDGISHHR*VPSKIICLAMCTWKIQ 44 T+Y + L G+V G VIL + K+R D H V + + + W + Sbjct: 43 TIYSIIFLTGIVGNGLVIL-----VMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVD 97 Query: 43 ICCQWQF 23 W F Sbjct: 98 AVANWYF 104
>CXCR4_MACMU (P79394) C-X-C chemokine receptor type 4 (CXC-R4) (CXCR-4) (SDF-1| receptor) (Stromal cell-derived factor 1 receptor) (Fusin) (LESTR) (CD184 antigen) Length = 352 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/67 (25%), Positives = 26/67 (38%) Frame = -3 Query: 223 TVYVFVKLLGVVFKGAVILKARPALQDQAWKIRGNGDGISHHR*VPSKIICLAMCTWKIQ 44 T+Y + L G+V G VIL + K+R D H V + + + W + Sbjct: 43 TIYSIIFLTGIVGNGLVIL-----VMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVD 97 Query: 43 ICCQWQF 23 W F Sbjct: 98 AVANWYF 104
>CXCR4_HUMAN (P61073) C-X-C chemokine receptor type 4 (CXC-R4) (CXCR-4) (Stromal| cell-derived factor 1 receptor) (SDF-1 receptor) (Fusin) (Leukocyte-derived seven transmembrane domain receptor) (LESTR) (LCR1) (FB22) (NPYRL) (HM89) (CD184 antigen) Length = 352 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/67 (25%), Positives = 26/67 (38%) Frame = -3 Query: 223 TVYVFVKLLGVVFKGAVILKARPALQDQAWKIRGNGDGISHHR*VPSKIICLAMCTWKIQ 44 T+Y + L G+V G VIL + K+R D H V + + + W + Sbjct: 43 TIYSIIFLTGIVGNGLVIL-----VMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVD 97 Query: 43 ICCQWQF 23 W F Sbjct: 98 AVANWYF 104
>CXCR4_CERTO (O62747) C-X-C chemokine receptor type 4 (CXC-R4) (CXCR-4) (SDF-1| receptor) (Stromal cell-derived factor 1 receptor) (Fusin) (LESTR) (CD184 antigen) Length = 352 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/67 (25%), Positives = 26/67 (38%) Frame = -3 Query: 223 TVYVFVKLLGVVFKGAVILKARPALQDQAWKIRGNGDGISHHR*VPSKIICLAMCTWKIQ 44 T+Y + L G+V G VIL + K+R D H V + + + W + Sbjct: 43 TIYSIIFLTGIVGNGLVIL-----VMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVD 97 Query: 43 ICCQWQF 23 W F Sbjct: 98 AVANWYF 104
>TDH_PYRKO (Q5JI69) Probable L-threonine 3-dehydrogenase (EC 1.1.1.103)| Length = 350 Score = 27.3 bits (59), Expect = 8.9 Identities = 8/21 (38%), Positives = 16/21 (76%) Frame = -1 Query: 297 NIWETWFQMKTIIISSKLGIE 235 ++WETW+ + ++I S KL ++ Sbjct: 295 HLWETWYTVSSLIQSGKLNLD 315
>CT032_HUMAN (Q9NQ75) HEF-like protein| Length = 786 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = -2 Query: 143 SSLENPRKW*WHFPSPVSTFKDYMPGHVYLENTDMLSMA 27 S+L NP+K W + +PVS PG + NT + S A Sbjct: 232 STLPNPQKSEWIYDTPVS------PGKASVRNTPLTSFA 264 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,967,695 Number of Sequences: 219361 Number of extensions: 1234612 Number of successful extensions: 2436 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2417 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2436 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
