ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl05a07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY104137.1| Zea mays PCO146094 mRNA sequence Length = 990 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 307 aaacaacaaatgttgaatgtacatttatacggaaacagc 345 |||||||||| ||||||||||||||||||| ||||||| Sbjct: 933 aaacaacaaactttgaatgtacatttatacgaaaacagc 895
>emb|CR655603.2|CNS0F4U1 Tetraodon nigroviridis full-length cDNA Length = 1524 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 291 aaatgttcagataataaaacaa 312 |||||||||||||||||||||| Sbjct: 407 aaatgttcagataataaaacaa 428
>gb|AC004052.1|AC004052 Homo sapiens chromosome 4 clone B209B10 map 4q25, complete sequence Length = 156490 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 299 agataataaaacaacaaatgtt 320 |||||||||||||||||||||| Sbjct: 39516 agataataaaacaacaaatgtt 39537
>gb|AC008225.4| Drosophila melanogaster clone BACR03E11, complete sequence Length = 174123 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 aatgctggcctggcctttaaa 170 ||||||||||||||||||||| Sbjct: 770 aatgctggcctggcctttaaa 790
>gb|AC073867.6| Oryza sativa chromosome 10 BAC OSJNBa0055O03 genomic sequence, complete sequence Length = 82909 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 300 gataataaaacaacaaatgttgaat 324 |||||||||| |||||||||||||| Sbjct: 71419 gataataaaaaaacaaatgttgaat 71443
>ref|XM_961052.1| Plasmodium falciparum 3D7 hypothetical protein (PFF0770c) partial mRNA Length = 5421 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 300 gataataaaacaacaaatgtt 320 ||||||||||||||||||||| Sbjct: 4684 gataataaaacaacaaatgtt 4704
>emb|AL359180.17| Human DNA sequence from clone RP11-320G21 on chromosome 13, complete sequence Length = 159229 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 309 acaacaaatgttgaatgtacattta 333 |||||||||||||||| |||||||| Sbjct: 99749 acaacaaatgttgaatttacattta 99773
>emb|CR382399.1| Plasmodium falciparum chromosome 6, complete sequence; segment 2/5 Length = 348174 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 gataataaaacaacaaatgtt 320 ||||||||||||||||||||| Sbjct: 313800 gataataaaacaacaaatgtt 313780
>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70 Length = 198429 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 caaatgttgaatgtacattta 333 ||||||||||||||||||||| Sbjct: 86287 caaatgttgaatgtacattta 86307
>emb|AL078470.1|ATF19B15 Arabidopsis thaliana DNA chromosome 4, BAC clone F19B15 (ESSA project) Length = 101679 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 caaatgttgaatgtacattta 333 ||||||||||||||||||||| Sbjct: 69814 caaatgttgaatgtacattta 69834
>gb|AC016207.9| Homo sapiens, clone RP11-25H20, complete sequence Length = 169476 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 ccaagaagcttaacaaaaaca 215 ||||||||||||||||||||| Sbjct: 130855 ccaagaagcttaacaaaaaca 130875
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 300 gataataaaacaacaaatgttgaat 324 |||||||||| |||||||||||||| Sbjct: 19219075 gataataaaaaaacaaatgttgaat 19219099
>gb|AC044802.6| Homo sapiens chromosome 16 clone RP11-61A14, complete sequence Length = 170691 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 264 tggttttcatttggaaccacgtttc 288 |||| |||||||||||||||||||| Sbjct: 13847 tggtattcatttggaaccacgtttc 13823
>gb|AC008029.3|AC008029 Drosophila melanogaster, chromosome 3R, region 84D-84D, BAC clone BACR01C11, complete sequence Length = 176991 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 150 aatgctggcctggcctttaaa 170 ||||||||||||||||||||| Sbjct: 74460 aatgctggcctggcctttaaa 74440
>gb|AC084666.1|CBRG47D14 Caenorhabditis briggsae cosmid G47D14, complete sequence Length = 37034 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 301 ataataaaacaacaaatgttg 321 ||||||||||||||||||||| Sbjct: 15889 ataataaaacaacaaatgttg 15909
>gb|AE003672.4| Drosophila melanogaster chromosome 3R, section 12 of 118 of the complete sequence Length = 301379 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 150 aatgctggcctggcctttaaa 170 ||||||||||||||||||||| Sbjct: 125869 aatgctggcctggcctttaaa 125849
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 300 gataataaaacaacaaatgttgaat 324 |||||||||| |||||||||||||| Sbjct: 19230351 gataataaaaaaacaaatgttgaat 19230375
>gb|BC083346.1| Mus musculus ribosomal protein L10A, mRNA (cDNA clone MGC:102116 IMAGE:5712034), complete cds Length = 733 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 caagaagcttaacaaaaaca 215 |||||||||||||||||||| Sbjct: 279 caagaagcttaacaaaaaca 298
>gb|AC158958.4| Mus musculus chromosome 1, clone RP23-31E12, complete sequence Length = 213244 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 caagaagcttaacaaaaaca 215 |||||||||||||||||||| Sbjct: 126108 caagaagcttaacaaaaaca 126089
>ref|NM_011287.1| Mus musculus ribosomal protein L10A (Rpl10a), mRNA Length = 700 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 caagaagcttaacaaaaaca 215 |||||||||||||||||||| Sbjct: 285 caagaagcttaacaaaaaca 304
>emb|CT025652.7| Mouse DNA sequence from clone RP24-68J3 on chromosome 17, complete sequence Length = 226856 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 caagaagcttaacaaaaaca 215 |||||||||||||||||||| Sbjct: 33560 caagaagcttaacaaaaaca 33541
>emb|CR956404.10| Pig DNA sequence from clone PigE-75D22 on chromosome 17, complete sequence Length = 135396 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 taatctttgaaggtacttac 95 |||||||||||||||||||| Sbjct: 96605 taatctttgaaggtacttac 96586
>emb|CT010441.11| Mouse DNA sequence from clone CH29-521N19 on chromosome 17, complete sequence Length = 235642 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 caagaagcttaacaaaaaca 215 |||||||||||||||||||| Sbjct: 137458 caagaagcttaacaaaaaca 137439
>gb|AC130541.4| Mus musculus BAC clone RP24-124P9 from chromosome 3, complete sequence Length = 191814 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 acacatggccaggcatataa 78 |||||||||||||||||||| Sbjct: 130253 acacatggccaggcatataa 130272
>gb|AC098877.3| Mus musculus BAC clone RP23-2C24 from 14, complete sequence Length = 240151 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 tgctggcctggcctttaaaa 171 |||||||||||||||||||| Sbjct: 210316 tgctggcctggcctttaaaa 210335
>emb|CR381650.15| Zebrafish DNA sequence from clone CH211-129F24 in linkage group 7, complete sequence Length = 137625 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 taataaaacaacaaatgttg 321 |||||||||||||||||||| Sbjct: 33019 taataaaacaacaaatgttg 33038
>gb|DQ493927.1| Homo sapiens fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome) (FGFR2) gene, complete cds Length = 122913 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 gatgatgatggttttcattt 275 |||||||||||||||||||| Sbjct: 61450 gatgatgatggttttcattt 61469
>gb|AC108554.8| Rattus norvegicus 7 BAC CH230-81L13 (Children's Hospital Oakland Research Institute) complete sequence Length = 157107 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 aataaaacaacaaatgttga 322 |||||||||||||||||||| Sbjct: 1239 aataaaacaacaaatgttga 1258
>gb|AC008009.5| Homo sapiens 3 BAC RP11-436A20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 212349 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 agtgactgaaattgccattg 34 |||||||||||||||||||| Sbjct: 105870 agtgactgaaattgccattg 105851
>gb|AC153523.7| Mus musculus 10 BAC RP23-463C2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 200141 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 aaatgttcagataataaaac 310 |||||||||||||||||||| Sbjct: 31841 aaatgttcagataataaaac 31822
>emb|BX321861.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 6/10 Length = 298050 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 344 gcaggcggtttagtttgatcatgttttc 371 ||||||||| ||||||||||||||||| Sbjct: 218369 gcaggcggtccagtttgatcatgttttc 218342
>emb|AJ556169.1|ACA556169 Aplysia californica mRNA for hemocyanin (hc gene) Length = 11468 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 ataataaaacaacaaatgtt 320 |||||||||||||||||||| Sbjct: 10656 ataataaaacaacaaatgtt 10637
>gb|AF487553.1| Homo sapiens fibroblast growth factor receptor 2 (FGFR2) gene, exons 2 through 18 and complete cds Length = 126467 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 gatgatgatggttttcattt 275 |||||||||||||||||||| Sbjct: 58113 gatgatgatggttttcattt 58132
>emb|BX530015.9| Zebrafish DNA sequence from clone DKEY-262K23 in linkage group 11, complete sequence Length = 101327 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 4 ataaaactgacagtgactgaaatt 27 |||||||||||||||||| ||||| Sbjct: 87982 ataaaactgacagtgacttaaatt 88005
>gb|AC016825.12| Homo sapiens chromosome 10 clone RP11-498B4, complete sequence Length = 198261 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 aagcttaacaaaaacataaa 219 |||||||||||||||||||| Sbjct: 159839 aagcttaacaaaaacataaa 159820
>gb|AC107022.4| Homo sapiens 3 BAC RP11-417H23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 116557 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 agagaagctttgaatacaac 399 |||||||||||||||||||| Sbjct: 83018 agagaagctttgaatacaac 83037
>gb|AC009988.12| Homo sapiens chromosome 10 clone RP11-62L18, complete sequence Length = 174398 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 gatgatgatggttttcattt 275 |||||||||||||||||||| Sbjct: 74304 gatgatgatggttttcattt 74285
>gb|AC063944.25| Homo sapiens 3 BAC RP11-446H18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180389 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 agagaagctttgaatacaac 399 |||||||||||||||||||| Sbjct: 83080 agagaagctttgaatacaac 83099
>gb|AF360695.3|AF410480S2 Homo sapiens keratinocyte growth factor receptor 2 (FGFR2) gene, exons 3 through 22 and complete cds, alternatively spliced Length = 94605 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 gatgatgatggttttcattt 275 |||||||||||||||||||| Sbjct: 32464 gatgatgatggttttcattt 32483
>gb|AC009754.10| Homo sapiens chromosome 15 clone RP11-519C12 map 15q21.2, complete sequence Length = 217319 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 caggtacacatggccaggca 73 |||||||||||||||||||| Sbjct: 104950 caggtacacatggccaggca 104931
>dbj|AK150743.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830014M06 product:ribosomal protein L10A, full insert sequence Length = 712 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 caagaagcttaacaaaaaca 215 |||||||||||||||||||| Sbjct: 301 caagaagcttaacaaaaaca 320
>dbj|AK153863.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430001E01 product:ribosomal protein L10A, full insert sequence Length = 710 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 caagaagcttaacaaaaaca 215 |||||||||||||||||||| Sbjct: 299 caagaagcttaacaaaaaca 318
>dbj|AK151172.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830026F17 product:ribosomal protein L10A, full insert sequence Length = 713 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 caagaagcttaacaaaaaca 215 |||||||||||||||||||| Sbjct: 302 caagaagcttaacaaaaaca 321
>gb|AC163646.2| Mus musculus BAC clone RP23-207D1 from chromosome 14, complete sequence Length = 185289 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 tgctggcctggcctttaaaa 171 |||||||||||||||||||| Sbjct: 170416 tgctggcctggcctttaaaa 170397
>emb|CR386734.1| Gallus gallus finished cDNA, clone ChEST14i12 Length = 1112 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 aagcttaacaaaaacataaa 219 |||||||||||||||||||| Sbjct: 708 aagcttaacaaaaacataaa 727
>dbj|AK002613.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610012K10 product:ribosomal protein L10A, full insert sequence Length = 1618 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 caagaagcttaacaaaaaca 215 |||||||||||||||||||| Sbjct: 205 caagaagcttaacaaaaaca 224
>gb|AC158602.6| Mus musculus 10 BAC RP23-136G23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 182817 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 aaatgttcagataataaaac 310 |||||||||||||||||||| Sbjct: 53755 aaatgttcagataataaaac 53774
>gb|AC153661.4| Mus musculus BAC clone RP23-152L5 from chromosome 3, complete sequence Length = 203476 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 acacatggccaggcatataa 78 |||||||||||||||||||| Sbjct: 36704 acacatggccaggcatataa 36723
>gb|AC022077.20| Homo sapiens 3 BAC RP11-34I16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158176 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 aagaagcttaacaaaaacat 216 |||||||||||||||||||| Sbjct: 87229 aagaagcttaacaaaaacat 87210
>dbj|AK215262.1| Mus musculus cDNA, clone:Y2G0134H14, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000061200, based on BLAT search Length = 224 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 caagaagcttaacaaaaaca 215 |||||||||||||||||||| Sbjct: 129 caagaagcttaacaaaaaca 148
>dbj|AK200448.1| Mus musculus cDNA, clone:Y1G0134J12, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000061200, based on BLAT search Length = 224 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 caagaagcttaacaaaaaca 215 |||||||||||||||||||| Sbjct: 129 caagaagcttaacaaaaaca 148
>dbj|AK193763.1| Mus musculus cDNA, clone:Y1G0113E17, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000061200, based on BLAT search Length = 224 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 caagaagcttaacaaaaaca 215 |||||||||||||||||||| Sbjct: 129 caagaagcttaacaaaaaca 148
>gb|AC005004.3|AC005004 Homo sapiens PAC clone RP3-403E2 from 22, complete sequence Length = 103606 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 gaagcttaacaaaaacataa 218 |||||||||||||||||||| Sbjct: 85660 gaagcttaacaaaaacataa 85641
>gb|AC005660.3|AC005660 citb_163_g_10, complete sequence Length = 112652 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 aagcttaacaaaaacataaa 219 |||||||||||||||||||| Sbjct: 53670 aagcttaacaaaaacataaa 53689
>emb|AL592183.10| Human DNA sequence from clone RP11-297D8 on chromosome 22, complete sequence Length = 179198 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 304 ataaaacaacaaatgttgaatgta 327 |||||||| ||||||||||||||| Sbjct: 22944 ataaaacagcaaatgttgaatgta 22967
>gb|AC156581.4| Pan troglodytes BAC clone CH251-372H22 from chromosome unknown, complete sequence Length = 188418 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 gaagcttaacaaaaacataa 218 |||||||||||||||||||| Sbjct: 109512 gaagcttaacaaaaacataa 109531
>gb|AC154912.3| Mus musculus BAC clone RP23-23B10 from 17, complete sequence Length = 228141 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 caagaagcttaacaaaaaca 215 |||||||||||||||||||| Sbjct: 218715 caagaagcttaacaaaaaca 218696
>gb|AC109224.16| Mus musculus chromosome 5, clone RP23-150I2, complete sequence Length = 202994 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 ttgacaacatatctgtattt 51 |||||||||||||||||||| Sbjct: 89932 ttgacaacatatctgtattt 89951
>emb|CT009685.18| Pig DNA sequence from clone CH242-172A22 on chromosome 17, complete sequence Length = 130271 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 taatctttgaaggtacttac 95 |||||||||||||||||||| Sbjct: 78145 taatctttgaaggtacttac 78164
>gb|U12403.1|MMU12403 Mus musculus Csa-19 mRNA, complete cds Length = 700 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 caagaagcttaacaaaaaca 215 |||||||||||||||||||| Sbjct: 285 caagaagcttaacaaaaaca 304
>gb|AC101869.13| Mus musculus chromosome 1, clone RP23-348D4, complete sequence Length = 206095 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 caagaagcttaacaaaaaca 215 |||||||||||||||||||| Sbjct: 178168 caagaagcttaacaaaaaca 178187 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,349,963 Number of Sequences: 3902068 Number of extensions: 5349963 Number of successful extensions: 114687 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 114529 Number of HSP's gapped (non-prelim): 158 length of query: 405 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 383 effective length of database: 17,147,199,772 effective search space: 6567377512676 effective search space used: 6567377512676 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
