ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl05a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC157805.3| Mus musculus chromosome 1, clone RP24-324B17, com... 42 1.6
2gb|DQ191684.1| Squilla empusa mitochondrion, complete genome 42 1.6
3emb|CR626941.10| Zebrafish DNA sequence from clone DKEY-12J5 in ... 42 1.6
4gb|AC164005.2| Mus musculus chromosome 1, clone RP24-312J21, com... 42 1.6
5gb|AC107673.9| Mus musculus chromosome 1, clone RP24-263O21, com... 42 1.6
6emb|AL133548.6| Human DNA sequence from clone RP11-235O14 on chr... 40 6.2

>gb|AC157805.3| Mus musculus chromosome 1, clone RP24-324B17, complete sequence
          Length = 212185

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 12     atctgttagataaaacatagg 32
              |||||||||||||||||||||
Sbjct: 152914 atctgttagataaaacatagg 152934



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>gb|DQ191684.1| Squilla empusa mitochondrion, complete genome
          Length = 15828

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 89    aaatgacaattcatacaagaa 109
             |||||||||||||||||||||
Sbjct: 15514 aaatgacaattcatacaagaa 15534



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>emb|CR626941.10| Zebrafish DNA sequence from clone DKEY-12J5 in linkage group 16,
            complete sequence
          Length = 238554

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 82   agtttacaaatgacaattcat 102
            |||||||||||||||||||||
Sbjct: 3119 agtttacaaatgacaattcat 3099



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>gb|AC164005.2| Mus musculus chromosome 1, clone RP24-312J21, complete sequence
          Length = 159540

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 12    atctgttagataaaacatagg 32
             |||||||||||||||||||||
Sbjct: 22293 atctgttagataaaacatagg 22313



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>gb|AC107673.9| Mus musculus chromosome 1, clone RP24-263O21, complete sequence
          Length = 168540

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 12    atctgttagataaaacatagg 32
             |||||||||||||||||||||
Sbjct: 33621 atctgttagataaaacatagg 33641



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>emb|AL133548.6| Human DNA sequence from clone RP11-235O14 on chromosome 9q13-21.2
             Contains a novel gene (FLJ20559), the OSTF1 gene for
             osteoclast stimulating factor 1 (OSF, SH3P2) and a CpG
             island, complete sequence
          Length = 153392

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   atggggccaaatatatgtta 329
             ||||||||||||||||||||
Sbjct: 65093 atggggccaaatatatgtta 65074


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,373,092
Number of Sequences: 3902068
Number of extensions: 3373092
Number of successful extensions: 56025
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56017
Number of HSP's gapped (non-prelim): 8
length of query: 458
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 436
effective length of database: 17,147,199,772
effective search space: 7476179100592
effective search space used: 7476179100592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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