Clone Name | rbastl05a04 |
---|---|
Clone Library Name | barley_pub |
>gb|AC132095.3| Mus musculus BAC clone RP24-381M10 from chromosome 17, complete sequence Length = 187926 Score = 42.1 bits (21), Expect = 0.59 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 acagaaatactacaaacattt 117 ||||||||||||||||||||| Sbjct: 46043 acagaaatactacaaacattt 46063
>gb|AC121864.1| Mus musculus BAC clone RP24-111L8 from 17, complete sequence Length = 194372 Score = 42.1 bits (21), Expect = 0.59 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 acagaaatactacaaacattt 117 ||||||||||||||||||||| Sbjct: 190292 acagaaatactacaaacattt 190312
>gb|AC151805.20| Medicago truncatula clone mth2-59n17, complete sequence Length = 143937 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 gaaatactacaaacatttcc 119 |||||||||||||||||||| Sbjct: 40330 gaaatactacaaacatttcc 40349
>gb|AC170084.13| Medicago truncatula clone mth2-156k10, complete sequence Length = 143943 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gaaatactacaaacatttcc 119 |||||||||||||||||||| Sbjct: 103611 gaaatactacaaacatttcc 103592
>emb|CR391990.8| Zebrafish DNA sequence from clone DKEY-261M5 in linkage group 14, complete sequence Length = 165493 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 caaaaaggggaaccaaataa 45 |||||||||||||||||||| Sbjct: 82975 caaaaaggggaaccaaataa 82994
>emb|AJ784255.1| Betula nigra partial 5S rRNA gene, NTS and partial 5S rRNA gene, specimen voucher Forest 97-118 (MT) Length = 513 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 aagcaaaaaggggaaccaaa 42 |||||||||||||||||||| Sbjct: 128 aagcaaaaaggggaaccaaa 109
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 acgacagaaatactacaaac 113 |||||||||||||||||||| Sbjct: 4896509 acgacagaaatactacaaac 4896528
>emb|CR354603.12| Zebrafish DNA sequence from clone CH211-106J11 in linkage group 24, complete sequence Length = 159582 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 tgcaagtcactggcattggt 92 |||||||||||||||||||| Sbjct: 39857 tgcaagtcactggcattggt 39876
>emb|BX511270.9| Zebrafish DNA sequence from clone DKEY-35N12 in linkage group 14, complete sequence Length = 246102 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 caaaaaggggaaccaaataa 45 |||||||||||||||||||| Sbjct: 28604 caaaaaggggaaccaaataa 28585
>gb|AC151459.30| Medicago truncatula clone mth2-6e6, complete sequence Length = 129518 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gaaatactacaaacatttcc 119 |||||||||||||||||||| Sbjct: 2093 gaaatactacaaacatttcc 2074
>gb|AC093566.3| Homo sapiens chromosome 8, clone CTD-2017M22, complete sequence Length = 177522 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tagtattaggagctttctaa 160 |||||||||||||||||||| Sbjct: 73742 tagtattaggagctttctaa 73761
>emb|CT485672.1| Leptosphaeria maculans : genomic region surrounding the avirulence gene AvrLm1 (AM084345) Length = 31195 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 aaggattagtattaggagct 154 |||||||||||||||||||| Sbjct: 13529 aaggattagtattaggagct 13548
>emb|AL671925.4| Mouse DNA sequence from clone RP23-236O21 on chromosome 4, complete sequence Length = 218429 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 aggagctttctaaaatacaa 167 |||||||||||||||||||| Sbjct: 39369 aggagctttctaaaatacaa 39388
>gb|AC102622.7| Mus musculus chromosome 3, clone RP23-434O10, complete sequence Length = 237899 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 11 ggaattttctgcaagcaaaaagg 33 ||||||||||||||||| ||||| Sbjct: 218732 ggaattttctgcaagcagaaagg 218754
>gb|AC122850.4| Mus musculus BAC clone RP23-167J19 from 10, complete sequence Length = 234973 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 caaataaccttgacacaat 57 ||||||||||||||||||| Sbjct: 171849 caaataaccttgacacaat 171867
>gb|AF039043.1| Caenorhabditis elegans cosmid F39C12, complete sequence Length = 40233 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aattttctgcaagcaaaaa 31 ||||||||||||||||||| Sbjct: 28970 aattttctgcaagcaaaaa 28952
>gb|DQ157766.1| Takifugu rubripes peroxisome proliferator activated receptor gamma coactivator 1 alpha (Pgc1a) mRNA, partial cds Length = 1421 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 78 gtcactggcattggtcacg 96 ||||||||||||||||||| Sbjct: 126 gtcactggcattggtcacg 108
>gb|AF368526.4| Lyngbya majuscula CCAP 1446/4 HypB (hypB), HypA (hypA), HypE (hypE), hypothetical protein, 4-oxalocrotonate tautomerase, HypD (hypD), hypothetical protein, HypC (hypC), HypF (hypF), hypothetical proteins, and HupS (hupS) genes, complete cds; hupS-hupL intergenic spacer, complete sequence; HupL (hupL), hypothetical protein, and HupW (hupW) genes, complete cds; and hypothetical protein gene, partial cds Length = 21201 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 aaagatttgttaatgcaag 78 ||||||||||||||||||| Sbjct: 5023 aaagatttgttaatgcaag 5005
>emb|AL360006.15| Human DNA sequence from clone RP11-528D17 on chromosome 1, complete sequence Length = 113420 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 cacaatacaaagatttgtt 70 ||||||||||||||||||| Sbjct: 63769 cacaatacaaagatttgtt 63751
>emb|AL355591.13| Human DNA sequence from clone RP11-300B7 on chromosome 10 Contains a CpG island, complete sequence Length = 129839 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 aaaaaggggaaccaaataa 45 ||||||||||||||||||| Sbjct: 122936 aaaaaggggaaccaaataa 122918
>emb|AL356010.9| Human DNA sequence from clone RP11-136B18 on chromosome 1 Contains a pseudogene similar to part of POM (POM121 homolog, rat) and ZP3 fusion (POMZP3), a novel gene and a CpG island, complete sequence Length = 151182 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 165 caacaggggttgttttaag 183 ||||||||||||||||||| Sbjct: 115688 caacaggggttgttttaag 115706
>gb|AC016942.13| Homo sapiens 3 BAC RP11-536K4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152014 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 59 caaagatttgttaatgcaagtca 81 ||||||||||||| ||||||||| Sbjct: 29311 caaagatttgttagtgcaagtca 29289
>emb|AL121993.7|HSDJ776P7 Human DNA sequence from clone RP4-776P7 on chromosome 1p13.1-13.3 Contains the 3' end of a novel gene (FLJ34497), the WDR3 gene for WD repeat domain 3, the 5' end of the GDAP2 gene for ganglioside induced differentiation associated protein 2 and a CPG island, complete sequence Length = 98062 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 tgacacaatacaaagattt 67 ||||||||||||||||||| Sbjct: 44625 tgacacaatacaaagattt 44607
>emb|CR936848.6| Mouse DNA sequence from clone DN-315E9 on chromosome 3, complete sequence Length = 144824 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 11 ggaattttctgcaagcaaaaagg 33 ||||||||||||||||| ||||| Sbjct: 94678 ggaattttctgcaagcagaaagg 94656
>gb|AC026341.17| Homo sapiens 3 BAC RP11-416B23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156392 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 152 gctttctaaaatacaacag 170 ||||||||||||||||||| Sbjct: 31372 gctttctaaaatacaacag 31390
>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 Length = 1841713 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 20 tgcaagcaaaaaggggaaccaaa 42 |||| |||||||||||||||||| Sbjct: 173177 tgcaggcaaaaaggggaaccaaa 173155
>gb|AC019084.9| Homo sapiens BAC clone RP11-354O2 from 7, complete sequence Length = 201215 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 aattttctgcaagcaaaaa 31 ||||||||||||||||||| Sbjct: 123056 aattttctgcaagcaaaaa 123074
>emb|AL928725.18| Zebrafish DNA sequence from clone CH211-13O20 in linkage group 23, complete sequence Length = 199910 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 26 caaaaaggggaaccaaata 44 ||||||||||||||||||| Sbjct: 168802 caaaaaggggaaccaaata 168820
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 159 aaaatacaacaggggttgtttta 181 |||| |||||||||||||||||| Sbjct: 21621756 aaaagacaacaggggttgtttta 21621778
>gb|AC155722.9| Mus musculus 6 BAC RP24-204J8 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 198481 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 ctgcaagcaaaaaggggaa 37 ||||||||||||||||||| Sbjct: 51376 ctgcaagcaaaaaggggaa 51394
>gb|AC158653.7| Mus musculus 6 BAC RP23-418F10 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 185818 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 ctgcaagcaaaaaggggaa 37 ||||||||||||||||||| Sbjct: 172987 ctgcaagcaaaaaggggaa 173005
>gb|AC154444.2| Mus musculus BAC clone RP24-179H6 from chromosome 13, complete sequence Length = 150924 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 caaataaccttgacacaat 57 ||||||||||||||||||| Sbjct: 38508 caaataaccttgacacaat 38526
>gb|AC073616.17| Homo sapiens 12 BAC RP3-361K10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 128936 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aattttctgcaagcaaaaa 31 ||||||||||||||||||| Sbjct: 109916 aattttctgcaagcaaaaa 109898
>dbj|AP003342.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0049O23 Length = 121038 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 159 aaaatacaacaggggttgtttta 181 |||| |||||||||||||||||| Sbjct: 115295 aaaagacaacaggggttgtttta 115317
>dbj|AP003296.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0697C12 Length = 149098 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 159 aaaatacaacaggggttgtttta 181 |||| |||||||||||||||||| Sbjct: 78309 aaaagacaacaggggttgtttta 78331
>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome Length = 1080084 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 aattttctgcaagcaaaaa 31 ||||||||||||||||||| Sbjct: 816023 aattttctgcaagcaaaaa 816041
>dbj|AB007770.1| Aspergillus oryzae tef gene for translation elongation factor 1 alpha, complete cds Length = 3181 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 20 tgcaagcaaaaaggggaaccaaa 42 |||| |||||||||||||||||| Sbjct: 2306 tgcaggcaaaaaggggaaccaaa 2284
>emb|AL163912.1|ATT2I1 Arabidopsis thaliana DNA chromosome 5, BAC clone T2I1 (ESSA project) Length = 116763 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 55 aatacaaagatttgttaat 73 ||||||||||||||||||| Sbjct: 24730 aatacaaagatttgttaat 24748
>gb|AC026191.4| Homo sapiens chromosome 3 clone RP11-380O24 map 3p, complete sequence Length = 164528 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 ctgcaagcaaaaaggggaa 37 ||||||||||||||||||| Sbjct: 134282 ctgcaagcaaaaaggggaa 134264
>dbj|AP006095.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT10G09, TM0173a, complete sequence Length = 30060 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 3 cttcgaagggaattttctgcaag 25 |||||||||||||||||| |||| Sbjct: 8048 cttcgaagggaattttctccaag 8026
>emb|AL683824.8| Mouse DNA sequence from clone RP23-90O18 on chromosome 3, complete sequence Length = 233589 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 11 ggaattttctgcaagcaaaaagg 33 ||||||||||||||||| ||||| Sbjct: 60705 ggaattttctgcaagcagaaagg 60683 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,784,404 Number of Sequences: 3902068 Number of extensions: 1784404 Number of successful extensions: 133863 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 133681 Number of HSP's gapped (non-prelim): 182 length of query: 188 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 166 effective length of database: 17,147,199,772 effective search space: 2846435162152 effective search space used: 2846435162152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)