ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196975.1| Oryza sativa (japonica cultivar-group) unknown ... 78 3e-11
2gb|AC078948.11| Oryza sativa chromosome 10 BAC OSJNBa0001K12 gen... 78 3e-11
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
4gb|AC069145.5|AC069145 Oryza sativa chromosome 10 BAC OSJNBb0094... 78 3e-11
5dbj|AK073558.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
6dbj|AK067795.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 78 3e-11
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
9dbj|AP005444.4| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
10dbj|AP006159.3| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
11dbj|AK105610.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
12dbj|AK070141.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
13gb|AC104286.11| Drosophila melanogaster X BAC RP98-13J2 (Roswell... 44 0.39
14emb|AL050231.2|DMBR37P7 Drosophila melanogaster BAC clone BACR37P7 44 0.39
15gb|AE003417.4| Drosophila melanogaster chromosome X, section 1 o... 44 0.39
16gb|AC091402.2| Sus scrofa clone RP44-363K13, complete sequence 42 1.5
17dbj|AB159447.1| Bombyx mori DNA, chromosome 13, clone:534E24, co... 42 1.5
18gb|BC092015.1| Xenopus laevis cDNA clone MGC:84986 IMAGE:6325168... 42 1.5
19emb|AL845280.4| Mouse DNA sequence from clone RP23-265L1 on chro... 42 1.5
20gb|AC005017.1| Homo sapiens BAC clone GS1-214N13 from 7, complet... 40 6.1
21emb|BX323451.12| Zebrafish DNA sequence from clone DKEY-49H9 in ... 40 6.1
22emb|BX664602.11| Zebrafish DNA sequence from clone DKEY-31C18 in... 40 6.1
23gb|AC154873.6| Mus musculus chromosome 1, clone RP23-71J17, comp... 40 6.1
24gb|AC092319.2| Homo sapiens chromosome 5 clone RP11-103L11, comp... 40 6.1
25gb|AC073023.7| Homo sapiens chromosome 8, clone RP11-211F2, comp... 40 6.1
26gb|AC068944.5| Homo sapiens BAC clone RP11-769N22 from 4, comple... 40 6.1
27gb|AC018788.10| Homo sapiens chromosome , clone RP11-24E9, compl... 40 6.1
28gb|AC091947.4| Homo sapiens chromosome 5 clone RP11-367F9, compl... 40 6.1
29gb|AC098698.3| Papio anubis clone RP41-177A23, complete sequence 40 6.1 
>ref|NM_196975.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0001K12.17), mRNA
          Length = 3114

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                        
Query: 336  ggggatacatgtattctgtccatcaggtttaccttcggtgcctcaagaatcgcctttggg 395
            |||||||  ||||| |||||||||||||||||||| || || ||||| || ||||| || 
Sbjct: 2810 ggggataggtgtatcctgtccatcaggtttaccttgggggcatcaaggattgccttgggt 2751

                                                           
Query: 396  ggtgacaatgcccactgcattgcccaaatagcaagaggccgcatgta 442
            || ||   |||||| |||||||||||||| || ||||||||||||||
Sbjct: 2750 ggagaacgtgcccattgcattgcccaaatggcgagaggccgcatgta 2704



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 146  tgaaccccactggatcttggaagggggcaaggagaagccg 185
            |||||||||||| | |||| |||||| |||||| ||||||
Sbjct: 3012 tgaaccccactgaaacttgtaaggggccaaggaaaagccg 2973
to top
>gb|AC078948.11| Oryza sativa chromosome 10 BAC OSJNBa0001K12 genomic sequence, complete
              sequence
          Length = 144724

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                          
Query: 336    ggggatacatgtattctgtccatcaggtttaccttcggtgcctcaagaatcgcctttggg 395
              |||||||  ||||| |||||||||||||||||||| || || ||||| || ||||| || 
Sbjct: 122268 ggggataggtgtatcctgtccatcaggtttaccttgggggcatcaaggattgccttgggt 122209

                                                             
Query: 396    ggtgacaatgcccactgcattgcccaaatagcaagaggccgcatgta 442
              || ||   |||||| |||||||||||||| || ||||||||||||||
Sbjct: 122208 ggagaacgtgcccattgcattgcccaaatggcgagaggccgcatgta 122162



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                  
Query: 51     tagttcactgtacaaattatacaacaaaagctcttt 86
              ||||| ||||||||| ||||||||||| ||||||||
Sbjct: 122583 tagtttactgtacaa-ttatacaacaagagctcttt 122549



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 146    tgaaccccactggatcttggaagggggcaaggagaagccg 185
              |||||||||||| | |||| |||||| |||||| ||||||
Sbjct: 122470 tgaaccccactgaaacttgtaaggggccaaggaaaagccg 122431
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/107 (84%)
 Strand = Plus / Plus

                                                                            
Query: 336      ggggatacatgtattctgtccatcaggtttaccttcggtgcctcaagaatcgcctttggg 395
                |||||||  ||||| |||||||||||||||||||| || || ||||| || ||||| || 
Sbjct: 17070068 ggggataggtgtatcctgtccatcaggtttaccttgggggcatcaaggattgccttgggt 17070127

                                                               
Query: 396      ggtgacaatgcccactgcattgcccaaatagcaagaggccgcatgta 442
                || ||   |||||| |||||||||||||| || ||||||||||||||
Sbjct: 17070128 ggagaacgtgcccattgcattgcccaaatggcgagaggccgcatgta 17070174



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 146      tgaaccccactggatcttggaagggggcaaggagaagccg 185
                |||||||||||| | |||| |||||| |||||| ||||||
Sbjct: 17069866 tgaaccccactgaaacttgtaaggggccaaggaaaagccg 17069905



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                    
Query: 51       tagttcactgtacaaattatacaacaaaagctcttt 86
                ||||| ||||||||| ||||||||||| ||||||||
Sbjct: 17069753 tagtttactgtacaa-ttatacaacaagagctcttt 17069787
to top
>gb|AC069145.5|AC069145 Oryza sativa chromosome 10 BAC OSJNBb0094K03 genomic sequence, complete
              sequence
          Length = 135216

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/107 (84%)
 Strand = Plus / Plus

                                                                          
Query: 336    ggggatacatgtattctgtccatcaggtttaccttcggtgcctcaagaatcgcctttggg 395
              |||||||  ||||| |||||||||||||||||||| || || ||||| || ||||| || 
Sbjct: 110560 ggggataggtgtatcctgtccatcaggtttaccttgggggcatcaaggattgccttgggt 110619

                                                             
Query: 396    ggtgacaatgcccactgcattgcccaaatagcaagaggccgcatgta 442
              || ||   |||||| |||||||||||||| || ||||||||||||||
Sbjct: 110620 ggagaacgtgcccattgcattgcccaaatggcgagaggccgcatgta 110666



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                      
Query: 146    tgaaccccactggatcttggaagggggcaaggagaagccg 185
              |||||||||||| | |||| |||||| |||||| ||||||
Sbjct: 110358 tgaaccccactgaaacttgtaaggggccaaggaaaagccg 110397



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                  
Query: 51     tagttcactgtacaaattatacaacaaaagctcttt 86
              ||||| ||||||||| ||||||||||| ||||||||
Sbjct: 110245 tagtttactgtacaa-ttatacaacaagagctcttt 110279
to top
>dbj|AK073558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044N24, full
            insert sequence
          Length = 2884

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                        
Query: 336  ggggatacatgtattctgtccatcaggtttaccttcggtgcctcaagaatcgcctttggg 395
            |||||||  ||||| |||||||||||||||||||| || || ||||| || ||||| || 
Sbjct: 2532 ggggataggtgtatcctgtccatcaggtttaccttgggggcatcaaggattgccttgggt 2473

                                                           
Query: 396  ggtgacaatgcccactgcattgcccaaatagcaagaggccgcatgta 442
            || ||   |||||| |||||||||||||| || ||||||||||||||
Sbjct: 2472 ggagaacgtgcccattgcattgcccaaatggcgagaggccgcatgta 2426



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 51   tagttcactgtacaaattatacaacaaaagctcttt 86
            ||||| ||||||||| ||||||||||| ||||||||
Sbjct: 2847 tagtttactgtacaa-ttatacaacaagagctcttt 2813



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 146  tgaaccccactggatcttggaagggggcaaggagaagccg 185
            |||||||||||| | |||| |||||| |||||| ||||||
Sbjct: 2734 tgaaccccactgaaacttgtaaggggccaaggaaaagccg 2695
to top
>dbj|AK067795.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118D11, full
            insert sequence
          Length = 3716

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                        
Query: 336  ggggatacatgtattctgtccatcaggtttaccttcggtgcctcaagaatcgcctttggg 395
            |||||||  ||||| |||||||||||||||||||| || || ||||| || ||||| || 
Sbjct: 3230 ggggataggtgtatcctgtccatcaggtttaccttgggggcatcaaggattgccttgggt 3171

                                                           
Query: 396  ggtgacaatgcccactgcattgcccaaatagcaagaggccgcatgta 442
            || ||   |||||| |||||||||||||| || ||||||||||||||
Sbjct: 3170 ggagaacgtgcccattgcattgcccaaatggcgagaggccgcatgta 3124



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 51   tagttcactgtacaaattatacaacaaaagctcttt 86
            ||||| ||||||||| ||||||||||| ||||||||
Sbjct: 3545 tagtttactgtacaa-ttatacaacaagagctcttt 3511



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 146  tgaaccccactggatcttggaagggggcaaggagaagccg 185
            |||||||||||| | |||| |||||| |||||| ||||||
Sbjct: 3432 tgaaccccactgaaacttgtaaggggccaaggaaaagccg 3393
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/107 (84%)
 Strand = Plus / Plus

                                                                            
Query: 336      ggggatacatgtattctgtccatcaggtttaccttcggtgcctcaagaatcgcctttggg 395
                |||||||  ||||| |||||||||||||||||||| || || ||||| || ||||| || 
Sbjct: 17079108 ggggataggtgtatcctgtccatcaggtttaccttgggggcatcaaggattgccttgggt 17079167

                                                               
Query: 396      ggtgacaatgcccactgcattgcccaaatagcaagaggccgcatgta 442
                || ||   |||||| |||||||||||||| || ||||||||||||||
Sbjct: 17079168 ggagaacgtgcccattgcattgcccaaatggcgagaggccgcatgta 17079214



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 146      tgaaccccactggatcttggaagggggcaaggagaagccg 185
                |||||||||||| | |||| |||||| |||||| ||||||
Sbjct: 17078906 tgaaccccactgaaacttgtaaggggccaaggaaaagccg 17078945



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                    
Query: 51       tagttcactgtacaaattatacaacaaaagctcttt 86
                ||||| ||||||||| ||||||||||| ||||||||
Sbjct: 17078793 tagtttactgtacaa-ttatacaacaagagctcttt 17078827
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                        
Query: 399      gacaatgcccactgcattgcccaaatagcaagaggccgcatgtataccagcgacct 454
                ||||||||  ||||||||||||| || ||||| ||||||||||||| |||||||||
Sbjct: 15016241 gacaatgcatactgcattgcccagattgcaaggggccgcatgtatatcagcgacct 15016296
to top
>dbj|AP005444.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0011H01
          Length = 165634

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                     
Query: 399   gacaatgcccactgcattgcccaaatagcaagaggccgcatgtataccagcgacct 454
             ||||||||  ||||||||||||| || ||||| ||||||||||||| |||||||||
Sbjct: 22145 gacaatgcatactgcattgcccagattgcaaggggccgcatgtatatcagcgacct 22200
to top
>dbj|AP006159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1157F01
          Length = 181639

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                      
Query: 399    gacaatgcccactgcattgcccaaatagcaagaggccgcatgtataccagcgacct 454
              ||||||||  ||||||||||||| || ||||| ||||||||||||| |||||||||
Sbjct: 156411 gacaatgcatactgcattgcccagattgcaaggggccgcatgtatatcagcgacct 156466
to top
>dbj|AK105610.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B04, full
           insert sequence
          Length = 1309

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                   
Query: 399 gacaatgcccactgcattgcccaaatagcaagaggccgcatgtataccagcgacct 454
           ||||||||  ||||||||||||| || ||||| ||||||||||||| |||||||||
Sbjct: 922 gacaatgcatactgcattgcccagattgcaaggggccgcatgtatatcagcgacct 867
to top
>dbj|AK070141.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041G24, full
            insert sequence
          Length = 4647

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                    
Query: 399  gacaatgcccactgcattgcccaaatagcaagaggccgcatgtataccagcgacct 454
            ||||||||  ||||||||||||| || ||||| ||||||||||||| |||||||||
Sbjct: 4262 gacaatgcatactgcattgcccagattgcaaggggccgcatgtatatcagcgacct 4207
to top
>gb|AC104286.11| Drosophila melanogaster X BAC RP98-13J2 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 176393

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 58    ctgtacaaattatacaacaaaa 79
             ||||||||||||||||||||||
Sbjct: 76934 ctgtacaaattatacaacaaaa 76955
to top
>emb|AL050231.2|DMBR37P7 Drosophila melanogaster BAC clone BACR37P7
          Length = 102619

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 58    ctgtacaaattatacaacaaaa 79
             ||||||||||||||||||||||
Sbjct: 71686 ctgtacaaattatacaacaaaa 71707
to top
>gb|AE003417.4| Drosophila melanogaster chromosome X, section 1 of 74 of the complete
              sequence
          Length = 387740

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 58     ctgtacaaattatacaacaaaa 79
              ||||||||||||||||||||||
Sbjct: 169245 ctgtacaaattatacaacaaaa 169266
to top
>gb|AC091402.2| Sus scrofa clone RP44-363K13, complete sequence
          Length = 164663

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 136    agaaaaaacctgaaccccact 156
              |||||||||||||||||||||
Sbjct: 117518 agaaaaaacctgaaccccact 117498
to top
>dbj|AB159447.1| Bombyx mori DNA, chromosome 13, clone:534E24, complete sequence
          Length = 124898

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 63    caaattatacaacaaaagctc 83
             |||||||||||||||||||||
Sbjct: 45456 caaattatacaacaaaagctc 45436
to top
>gb|BC092015.1| Xenopus laevis cDNA clone MGC:84986 IMAGE:6325168, complete cds
          Length = 1345

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 255 tggaacgtggagctgggaata 275
           |||||||||||||||||||||
Sbjct: 563 tggaacgtggagctgggaata 583
to top
>emb|AL845280.4| Mouse DNA sequence from clone RP23-265L1 on chromosome X, complete
             sequence
          Length = 142846

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 46    tttaatagttcactgtacaaa 66
             |||||||||||||||||||||
Sbjct: 49896 tttaatagttcactgtacaaa 49916
to top
>gb|AC005017.1| Homo sapiens BAC clone GS1-214N13 from 7, complete sequence
          Length = 137176

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 305   acctatctcactgactgctc 324
             ||||||||||||||||||||
Sbjct: 38645 acctatctcactgactgctc 38626
to top
>emb|BX323451.12| Zebrafish DNA sequence from clone DKEY-49H9 in linkage group 8,
             complete sequence
          Length = 211489

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    acaaattatacaacaaaagc 81
             ||||||||||||||||||||
Sbjct: 65117 acaaattatacaacaaaagc 65136
to top
>emb|BX664602.11| Zebrafish DNA sequence from clone DKEY-31C18 in linkage group 6, complete
              sequence
          Length = 171498

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    agaagccggaagaaaaataa 197
              ||||||||||||||||||||
Sbjct: 158056 agaagccggaagaaaaataa 158037
to top
>gb|AC154873.6| Mus musculus chromosome 1, clone RP23-71J17, complete sequence
          Length = 256719

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 158    gatcttggaagggggcaagg 177
              ||||||||||||||||||||
Sbjct: 136323 gatcttggaagggggcaagg 136304
to top
>gb|AC092319.2| Homo sapiens chromosome 5 clone RP11-103L11, complete sequence
          Length = 132319

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     tttggagcagtgagttcaac 103
              ||||||||||||||||||||
Sbjct: 123009 tttggagcagtgagttcaac 122990
to top
>gb|AC073023.7| Homo sapiens chromosome 8, clone RP11-211F2, complete sequence
          Length = 171438

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 15   tcaaattttcacaaacttct 34
            ||||||||||||||||||||
Sbjct: 2983 tcaaattttcacaaacttct 3002
to top
>gb|AC068944.5| Homo sapiens BAC clone RP11-769N22 from 4, complete sequence
          Length = 169662

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    tatcaaattttcacaaactt 32
             ||||||||||||||||||||
Sbjct: 68228 tatcaaattttcacaaactt 68247
to top
>gb|AC018788.10| Homo sapiens chromosome , clone RP11-24E9, complete sequence
          Length = 146883

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    tcaaattttcacaaacttct 34
             ||||||||||||||||||||
Sbjct: 42648 tcaaattttcacaaacttct 42629
to top
>gb|AC091947.4| Homo sapiens chromosome 5 clone RP11-367F9, complete sequence
          Length = 170063

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    tttggagcagtgagttcaac 103
             ||||||||||||||||||||
Sbjct: 12944 tttggagcagtgagttcaac 12925
to top
>gb|AC098698.3| Papio anubis clone RP41-177A23, complete sequence
          Length = 165334

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 305   acctatctcactgactgctc 324
             ||||||||||||||||||||
Sbjct: 19016 acctatctcactgactgctc 18997


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,267,768
Number of Sequences: 3902068
Number of extensions: 4267768
Number of successful extensions: 78498
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78364
Number of HSP's gapped (non-prelim): 127
length of query: 454
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 432
effective length of database: 17,147,199,772
effective search space: 7407590301504
effective search space used: 7407590301504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top