>gb|AY029259.1| Hordeum vulgare alpha-L-arabinofuranosidase/beta-D-xylosidase
            isoenzyme ARA-I mRNA, complete cds
          Length = 2647

 Score =  735 bits (371), Expect = 0.0
 Identities = 383/387 (98%)
 Strand = Plus / Minus

                                                                        
Query: 63   tttacagttgcaaatcgtccctccaattccaaacgaataaaatcaaatttaacaaccgca 122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2634 tttacagttgcaaatcgtccctccaattccaaacgaataaaatcaaatttaacaaccgca 2575

                                                                        
Query: 123  acaaaacaactcccaaagcctcccgtggatccaattctttcttgtcccaacgaaaggccc 182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2574 acaaaacaactcccaaagcctcccgtggatccaattctttcttgtcccaacgaaaggccc 2515

                                                                        
Query: 183  atttggttatttcacctcccttaaatcaattcctacggcccattaccccggtcggcccat 242
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2514 atttggttatttcacctcccttaaatcgattcctacggcccattaccccggtcggcccat 2455

                                                                        
Query: 243  ccaattccatcttctttttcccctatcaaatgaaatcgatcctccctacgtggaattttt 302
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2454 ccaattccatcttctttttcccctatcaaatgaaatcgattctccctacgtggaattttt 2395

                                                                        
Query: 303  ctgatcaccgtcgatcatcagactcgcagttccacggtgtgcttgaggtcgccgacgtgc 362
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 2394 ctgatcaccgtcgatcatcagactcgcagttccacggtgtgcttgaggtcgccgtcatgc 2335

                                                                        
Query: 363  agcgtgtggccgccgagcgccaccttgcggccgcccagctcgtccaccacgctcaggtcc 422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2334 agcgtgtggccgccgagcgccaccttgcggccgcccagctcgtccaccacgctcaggtcc 2275

                                       
Query: 423  ctgcacacgtccacccggaacgccacc 449
            |||||||||||||||||||||||||||
Sbjct: 2274 ctgcacacgtccacccggaacgccacc 2248

>ref|XM_474061.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2298

 Score =  133 bits (67), Expect = 5e-28
 Identities = 100/111 (90%)
 Strand = Plus / Minus

                                                                        
Query: 339  gtgtgcttgaggtcgccgacgtgcagcgtgtggccgccgagcgccaccttgcggccgccc 398
            |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||  ||| 
Sbjct: 2279 gtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccaccttccggttgccg 2220

                                                               
Query: 399  agctcgtccaccacgctcaggtccctgcacacgtccacccggaacgccacc 449
            |||||||| || |||||||||||| ||||||||||||||  ||||||||||
Sbjct: 2219 agctcgtcgacgacgctcaggtccttgcacacgtccaccttgaacgccacc 2169

>emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003B01,
              complete sequence
          Length = 153643

 Score =  133 bits (67), Expect = 5e-28
 Identities = 100/111 (90%)
 Strand = Plus / Plus

                                                                          
Query: 339    gtgtgcttgaggtcgccgacgtgcagcgtgtggccgccgagcgccaccttgcggccgccc 398
              |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||  ||| 
Sbjct: 142131 gtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccaccttccggttgccg 142190

                                                                 
Query: 399    agctcgtccaccacgctcaggtccctgcacacgtccacccggaacgccacc 449
              |||||||| || |||||||||||| ||||||||||||||  ||||||||||
Sbjct: 142191 agctcgtcgacgacgctcaggtccttgcacacgtccaccttgaacgccacc 142241



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 64     ttacagttgcaaatcgtccctccaa 88
              |||||||||||||||| ||||||||
Sbjct: 141858 ttacagttgcaaatcgaccctccaa 141882

>emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02,
             complete sequence
          Length = 126659

 Score =  133 bits (67), Expect = 5e-28
 Identities = 100/111 (90%)
 Strand = Plus / Plus

                                                                         
Query: 339   gtgtgcttgaggtcgccgacgtgcagcgtgtggccgccgagcgccaccttgcggccgccc 398
             |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||  ||| 
Sbjct: 18418 gtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccaccttccggttgccg 18477

                                                                
Query: 399   agctcgtccaccacgctcaggtccctgcacacgtccacccggaacgccacc 449
             |||||||| || |||||||||||| ||||||||||||||  ||||||||||
Sbjct: 18478 agctcgtcgacgacgctcaggtccttgcacacgtccaccttgaacgccacc 18528



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 64    ttacagttgcaaatcgtccctccaa 88
             |||||||||||||||| ||||||||
Sbjct: 18145 ttacagttgcaaatcgaccctccaa 18169

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  133 bits (67), Expect = 5e-28
 Identities = 100/111 (90%)
 Strand = Plus / Plus

                                                                            
Query: 339      gtgtgcttgaggtcgccgacgtgcagcgtgtggccgccgagcgccaccttgcggccgccc 398
                |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||  ||| 
Sbjct: 32623397 gtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccaccttccggttgccg 32623456

                                                                   
Query: 399      agctcgtccaccacgctcaggtccctgcacacgtccacccggaacgccacc 449
                |||||||| || |||||||||||| ||||||||||||||  ||||||||||
Sbjct: 32623457 agctcgtcgacgacgctcaggtccttgcacacgtccaccttgaacgccacc 32623507



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 64       ttacagttgcaaatcgtccctccaa 88
                |||||||||||||||| ||||||||
Sbjct: 32623124 ttacagttgcaaatcgaccctccaa 32623148

>dbj|AK101782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065A06, full
            insert sequence
          Length = 2821

 Score =  133 bits (67), Expect = 5e-28
 Identities = 100/111 (90%)
 Strand = Plus / Minus

                                                                        
Query: 339  gtgtgcttgaggtcgccgacgtgcagcgtgtggccgccgagcgccaccttgcggccgccc 398
            |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||  ||| 
Sbjct: 2448 gtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccaccttccggttgccg 2389

                                                               
Query: 399  agctcgtccaccacgctcaggtccctgcacacgtccacccggaacgccacc 449
            |||||||| || |||||||||||| ||||||||||||||  ||||||||||
Sbjct: 2388 agctcgtcgacgacgctcaggtccttgcacacgtccaccttgaacgccacc 2338



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 64   ttacagttgcaaatcgtccctccaa 88
            |||||||||||||||| ||||||||
Sbjct: 2721 ttacagttgcaaatcgaccctccaa 2697

>dbj|AK071973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088J07, full
            insert sequence
          Length = 1746

 Score =  133 bits (67), Expect = 5e-28
 Identities = 100/111 (90%)
 Strand = Plus / Minus

                                                                        
Query: 339  gtgtgcttgaggtcgccgacgtgcagcgtgtggccgccgagcgccaccttgcggccgccc 398
            |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||  ||| 
Sbjct: 1409 gtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccaccttccggttgccg 1350

                                                               
Query: 399  agctcgtccaccacgctcaggtccctgcacacgtccacccggaacgccacc 449
            |||||||| || |||||||||||| ||||||||||||||  ||||||||||
Sbjct: 1349 agctcgtcgacgacgctcaggtccttgcacacgtccaccttgaacgccacc 1299



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 64   ttacagttgcaaatcgtccctccaa 88
            |||||||||||||||| ||||||||
Sbjct: 1682 ttacagttgcaaatcgaccctccaa 1658

>gb|AY112378.1| Zea mays CL47610_1 mRNA sequence
          Length = 676

 Score =  117 bits (59), Expect = 3e-23
 Identities = 89/99 (89%)
 Strand = Plus / Plus

                                                                       
Query: 339 gtgtgcttgaggtcgccgacgtgcagcgtgtggccgccgagcgccaccttgcggccgccc 398
           |||||||||||||| ||||||||||||||||||| ||| ||||||||||| | |  ||||
Sbjct: 391 gtgtgcttgaggtccccgacgtgcagcgtgtggctgcccagcgccaccttcctgttgccc 450

                                                  
Query: 399 agctcgtccaccacgctcaggtccctgcacacgtccacc 437
           ||||||||||| ||||| |||||| ||||||||||||||
Sbjct: 451 agctcgtccacgacgctgaggtccttgcacacgtccacc 489



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 144 cccgtggatccaattctttc 163
           ||||||||||||||||||||
Sbjct: 216 cccgtggatccaattctttc 235

>emb|AL691468.12| Mouse DNA sequence from clone RP23-20K13 on chromosome 4 Contains the 3'
              end of a novel gene (4933412J03Rik), a
              glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene,
              the Tnfsf15 gene for tumor necrosis factor (ligand)
              superfamily member 15 and the 3' end of the Tnfsf8 for
              tumor necrosis factor (ligand) superfamily member 8,
              complete sequence
          Length = 212420

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 253    cttctttttcccctatcaaatg 274
              ||||||||||||||||||||||
Sbjct: 201544 cttctttttcccctatcaaatg 201565

>gb|AC112494.2| Homo sapiens X BAC RP11-1L9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 155681

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 239    ccatccaattccatcttcttt 259
              |||||||||||||||||||||
Sbjct: 119520 ccatccaattccatcttcttt 119500

>emb|AL353730.13| Human DNA sequence from clone RP11-55P9 on chromosome 9, complete
             sequence
          Length = 147810

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 98    aataaaatcaaatttaacaac 118
             |||||||||||||||||||||
Sbjct: 56521 aataaaatcaaatttaacaac 56541

>gb|AC108734.10| Homo sapiens 3 BAC RP11-259P15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 125990

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 104    atcaaatttaacaaccgcaacaaaa 128
              ||||||||||||||| |||||||||
Sbjct: 102960 atcaaatttaacaacagcaacaaaa 102984

>emb|BX247870.5| Zebrafish DNA sequence from clone RP71-24B12 in linkage group 14,
             complete sequence
          Length = 148854

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 126   aaacaactcccaaagcctccc 146
             |||||||||||||||||||||
Sbjct: 80405 aaacaactcccaaagcctccc 80385

>gb|U33007.1|SCD9461 Saccharomyces cerevisiae chromosome IV lambda 3641 and cosmids 9461,
             9831, and 9410
          Length = 78500

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 249   ccatcttctttttcccctatc 269
             |||||||||||||||||||||
Sbjct: 42258 ccatcttctttttcccctatc 42278

>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 377     gagcgccaccttgcggccgc 396
               ||||||||||||||||||||
Sbjct: 2452084 gagcgccaccttgcggccgc 2452103

>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
               sequence
          Length = 1783081

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 247     ttccatcttctttttcccctatca 270
               ||||||||| ||||||||||||||
Sbjct: 1304518 ttccatcttttttttcccctatca 1304495

>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 349     ggtcgccgacgtgcagcgtg 368
               ||||||||||||||||||||
Sbjct: 3418248 ggtcgccgacgtgcagcgtg 3418229

>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 349    ggtcgccgacgtgcagcgtg 368
              ||||||||||||||||||||
Sbjct: 455930 ggtcgccgacgtgcagcgtg 455911

>gb|AC146004.3| Pan troglodytes BAC clone RP43-161E12 from 7, complete sequence
          Length = 129417

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   aaaacaactcccaaagcctc 144
             ||||||||||||||||||||
Sbjct: 50042 aaaacaactcccaaagcctc 50061

>gb|AC005030.1| Homo sapiens BAC clone GS1-589P19 from 7, complete sequence
          Length = 148915

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   aaaacaactcccaaagcctc 144
             ||||||||||||||||||||
Sbjct: 67838 aaaacaactcccaaagcctc 67857

>ref|XM_570495.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CND04750) partial mRNA
          Length = 816

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 247 ttccatcttctttttcccctatca 270
           ||||||||| ||||||||||||||
Sbjct: 102 ttccatcttttttttcccctatca 125

>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16
          Length = 348580

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 378  agcgccaccttgcggccgcc 397
            ||||||||||||||||||||
Sbjct: 2214 agcgccaccttgcggccgcc 2195

>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 349    ggtcgccgacgtgcagcgtg 368
              ||||||||||||||||||||
Sbjct: 265786 ggtcgccgacgtgcagcgtg 265767

>gb|AE012383.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 291
            of 460 of the complete genome
          Length = 10211

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 332  ttccacggtgtgcttgaggtcgcc 355
            ||||||||||||| ||||||||||
Sbjct: 1186 ttccacggtgtgcgtgaggtcgcc 1163

>emb|BX255915.13| Zebrafish DNA sequence from clone CH211-245L1 in linkage group 5,
            complete sequence
          Length = 157382

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   caaacgaataaaatcaaatt 111
            ||||||||||||||||||||
Sbjct: 3795 caaacgaataaaatcaaatt 3814

>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 378     agcgccaccttgcggccgcc 397
               ||||||||||||||||||||
Sbjct: 4119100 agcgccaccttgcggccgcc 4119081

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 332     ttccacggtgtgcttgaggtcgcc 355
               ||||||||||||| ||||||||||
Sbjct: 1704419 ttccacggtgtgcgtgaggtcgcc 1704442

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 98      aataaaatcaaatttaacaa 117
               ||||||||||||||||||||
Sbjct: 2271224 aataaaatcaaatttaacaa 2271243

>dbj|AP000399.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0535G04
          Length = 154180

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     aataaaatcaaatttaacaa 117
              ||||||||||||||||||||
Sbjct: 130681 aataaaatcaaatttaacaa 130700

>emb|AL954168.6| Zebrafish DNA sequence from clone DKEY-3I24 in linkage group 17,
             complete sequence
          Length = 205011

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 84    tccaattccaaacgaataaaatcaaatt 111
             ||||||||||||| ||||||||||||||
Sbjct: 40013 tccaattccaaac-aataaaatcaaatt 39987


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,211,296
Number of Sequences: 3902068
Number of extensions: 4211296
Number of successful extensions: 82922
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 82565
Number of HSP's gapped (non-prelim): 359
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)