ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CCNC_MOUSE (Q62447) Cyclin-C 29 4.9
2CCNC_RAT (P39947) Cyclin-C 29 4.9
3T4S19_HUMAN (Q96DZ7) Transmembrane 4 L6 family 19 28 8.4

>CCNC_MOUSE (Q62447) Cyclin-C|
          Length = 304

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 149 YGFRLEFCMSGLWFLLYVADCCLHLYHLCFPTI-YFNTLGLHYVYVPV 9
           + +R+   +   ++LL + DCCL +YH   P + Y   +G   V +P+
Sbjct: 149 FPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDVLLPL 196



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>CCNC_RAT (P39947) Cyclin-C|
          Length = 298

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 149 YGFRLEFCMSGLWFLLYVADCCLHLYHLCFPTI-YFNTLGLHYVYVPV 9
           + +R+   +   ++LL + DCCL +YH   P + Y   +G   V +P+
Sbjct: 143 FPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDVLLPL 190



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>T4S19_HUMAN (Q96DZ7) Transmembrane 4 L6 family 19|
          Length = 209

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = -3

Query: 151 YMDSDWNFACLDCGFCCTLRIVAYTCIICVSQLYILTLLAYIM 23
           Y  S WN  CL+        +  ++ ++C+S L +L ++ +++
Sbjct: 154 YDRSLWNSVCLEPSAAVVWHVSLFSALLCISLLQLLLVVVHVI 196


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,364,825
Number of Sequences: 219361
Number of extensions: 1362614
Number of successful extensions: 3351
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3350
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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