ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_632948.1| Dictyostelium discoideum hypothetical protein (... 44 0.39
2gb|AC113244.19| Mus musculus chromosome 19, clone RP23-172E2, co... 42 1.6
3gb|AC090526.3|AC090526 Homo sapiens chromosome 15 clone RP11-208... 42 1.6
4emb|CR478208.13| Zebrafish DNA sequence from clone CH211-149M3 i... 40 6.1
5ref|XM_800016.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.1
6ref|XM_815960.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.1
7gb|AC136970.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
8gb|AC093574.3| Homo sapiens chromosome 3 clone RP11-178K11, comp... 40 6.1
9emb|BX571659.1| Wolinella succinogenes, complete genome; segment... 40 6.1
10gb|AC147879.2| Xenopus tropicalis clone CH216-108K9, complete se... 40 6.1
11gb|AC144770.1| Homo sapiens chromosome 19 clone XXfos-87852H4, c... 40 6.1
12gb|AC092566.2| Homo sapiens chromosome 19 clone LLNLR-239F4, com... 40 6.1
13gb|AC103585.2| Homo sapiens chromosome 3 clone RP11-48D9, comple... 40 6.1
14gb|AC026639.6| Homo sapiens chromosome 11, clone RP11-4B7, compl... 40 6.1
15dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
16gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1

>ref|XM_632948.1| Dictyostelium discoideum hypothetical protein (DDB0186701), partial
            mRNA
          Length = 1848

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 20   atacataatgtaggccaagagt 41
            ||||||||||||||||||||||
Sbjct: 1098 atacataatgtaggccaagagt 1077



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>gb|AC113244.19| Mus musculus chromosome 19, clone RP23-172E2, complete sequence
          Length = 224351

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 204   aatcatagtgaccaggctcgtaatttctc 232
             |||||||||||||||| |||| |||||||
Sbjct: 89073 aatcatagtgaccaggatcgtgatttctc 89101



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>gb|AC090526.3|AC090526 Homo sapiens chromosome 15 clone RP11-208K4 map 15q21.1, complete
             sequence
          Length = 168050

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 26    aatgtaggccaagagtgttaa 46
             |||||||||||||||||||||
Sbjct: 22997 aatgtaggccaagagtgttaa 22977



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>emb|CR478208.13| Zebrafish DNA sequence from clone CH211-149M3 in linkage group 16,
             complete sequence
          Length = 195111

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 362   atgggacgctgagagctcaagaag 385
             ||||||||||||||||| ||||||
Sbjct: 99816 atgggacgctgagagctaaagaag 99793



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>ref|XM_800016.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053509141.10) partial mRNA
          Length = 3837

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 160  ttccaaaaaggagaggattg 179
            ||||||||||||||||||||
Sbjct: 2121 ttccaaaaaggagaggattg 2140



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>ref|XM_815960.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053508741.210) partial mRNA
          Length = 5133

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 160  ttccaaaaaggagaggattg 179
            ||||||||||||||||||||
Sbjct: 3432 ttccaaaaaggagaggattg 3451



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>gb|AC136970.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0074L01, complete sequence
          Length = 115339

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 296   tcgattaaaatgcataatattcaa 319
             ||||| ||||||||||||||||||
Sbjct: 95133 tcgatgaaaatgcataatattcaa 95110



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>gb|AC093574.3| Homo sapiens chromosome 3 clone RP11-178K11, complete sequence
          Length = 151993

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 44     taaaatatatagttgggaaacaca 67
              |||||||||||||| |||||||||
Sbjct: 115678 taaaatatatagtttggaaacaca 115701



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>emb|BX571659.1| Wolinella succinogenes, complete genome; segment 3/7
          Length = 349970

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    tccaaaaaggagaggattgt 180
              ||||||||||||||||||||
Sbjct: 140282 tccaaaaaggagaggattgt 140263



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>gb|AC147879.2| Xenopus tropicalis clone CH216-108K9, complete sequence
          Length = 183182

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   caatccagacatgcaaaatt 133
             ||||||||||||||||||||
Sbjct: 42298 caatccagacatgcaaaatt 42317



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>gb|AC144770.1| Homo sapiens chromosome 19 clone XXfos-87852H4, complete sequence
          Length = 45852

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   tattagttcattccaaaaag 169
             ||||||||||||||||||||
Sbjct: 12253 tattagttcattccaaaaag 12234



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>gb|AC092566.2| Homo sapiens chromosome 19 clone LLNLR-239F4, complete sequence
          Length = 38046

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   tattagttcattccaaaaag 169
             ||||||||||||||||||||
Sbjct: 22158 tattagttcattccaaaaag 22177



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>gb|AC103585.2| Homo sapiens chromosome 3 clone RP11-48D9, complete sequence
          Length = 184596

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 44    taaaatatatagttgggaaacaca 67
             |||||||||||||| |||||||||
Sbjct: 32720 taaaatatatagtttggaaacaca 32743



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>gb|AC026639.6| Homo sapiens chromosome 11, clone RP11-4B7, complete sequence
          Length = 174711

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 42    gttaaaatatatagttgggaaaca 65
             |||| |||||||||||||||||||
Sbjct: 92325 gttataatatatagttgggaaaca 92348



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 296     tcgattaaaatgcataatattcaa 319
               ||||| ||||||||||||||||||
Sbjct: 1096851 tcgatgaaaatgcataatattcaa 1096828



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 296     tcgattaaaatgcataatattcaa 319
               ||||| ||||||||||||||||||
Sbjct: 1094572 tcgatgaaaatgcataatattcaa 1094549


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,012,062
Number of Sequences: 3902068
Number of extensions: 5012062
Number of successful extensions: 87475
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87382
Number of HSP's gapped (non-prelim): 93
length of query: 456
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 434
effective length of database: 17,147,199,772
effective search space: 7441884701048
effective search space used: 7441884701048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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