Clone Name | rbastl04h07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_632948.1| Dictyostelium discoideum hypothetical protein (DDB0186701), partial mRNA Length = 1848 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 20 atacataatgtaggccaagagt 41 |||||||||||||||||||||| Sbjct: 1098 atacataatgtaggccaagagt 1077
>gb|AC113244.19| Mus musculus chromosome 19, clone RP23-172E2, complete sequence Length = 224351 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 204 aatcatagtgaccaggctcgtaatttctc 232 |||||||||||||||| |||| ||||||| Sbjct: 89073 aatcatagtgaccaggatcgtgatttctc 89101
>gb|AC090526.3|AC090526 Homo sapiens chromosome 15 clone RP11-208K4 map 15q21.1, complete sequence Length = 168050 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 aatgtaggccaagagtgttaa 46 ||||||||||||||||||||| Sbjct: 22997 aatgtaggccaagagtgttaa 22977
>emb|CR478208.13| Zebrafish DNA sequence from clone CH211-149M3 in linkage group 16, complete sequence Length = 195111 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 362 atgggacgctgagagctcaagaag 385 ||||||||||||||||| |||||| Sbjct: 99816 atgggacgctgagagctaaagaag 99793
>ref|XM_800016.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509141.10) partial mRNA Length = 3837 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ttccaaaaaggagaggattg 179 |||||||||||||||||||| Sbjct: 2121 ttccaaaaaggagaggattg 2140
>ref|XM_815960.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508741.210) partial mRNA Length = 5133 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ttccaaaaaggagaggattg 179 |||||||||||||||||||| Sbjct: 3432 ttccaaaaaggagaggattg 3451
>gb|AC136970.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074L01, complete sequence Length = 115339 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 296 tcgattaaaatgcataatattcaa 319 ||||| |||||||||||||||||| Sbjct: 95133 tcgatgaaaatgcataatattcaa 95110
>gb|AC093574.3| Homo sapiens chromosome 3 clone RP11-178K11, complete sequence Length = 151993 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 taaaatatatagttgggaaacaca 67 |||||||||||||| ||||||||| Sbjct: 115678 taaaatatatagtttggaaacaca 115701
>emb|BX571659.1| Wolinella succinogenes, complete genome; segment 3/7 Length = 349970 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tccaaaaaggagaggattgt 180 |||||||||||||||||||| Sbjct: 140282 tccaaaaaggagaggattgt 140263
>gb|AC147879.2| Xenopus tropicalis clone CH216-108K9, complete sequence Length = 183182 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 caatccagacatgcaaaatt 133 |||||||||||||||||||| Sbjct: 42298 caatccagacatgcaaaatt 42317
>gb|AC144770.1| Homo sapiens chromosome 19 clone XXfos-87852H4, complete sequence Length = 45852 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 tattagttcattccaaaaag 169 |||||||||||||||||||| Sbjct: 12253 tattagttcattccaaaaag 12234
>gb|AC092566.2| Homo sapiens chromosome 19 clone LLNLR-239F4, complete sequence Length = 38046 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 tattagttcattccaaaaag 169 |||||||||||||||||||| Sbjct: 22158 tattagttcattccaaaaag 22177
>gb|AC103585.2| Homo sapiens chromosome 3 clone RP11-48D9, complete sequence Length = 184596 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 taaaatatatagttgggaaacaca 67 |||||||||||||| ||||||||| Sbjct: 32720 taaaatatatagtttggaaacaca 32743
>gb|AC026639.6| Homo sapiens chromosome 11, clone RP11-4B7, complete sequence Length = 174711 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 gttaaaatatatagttgggaaaca 65 |||| ||||||||||||||||||| Sbjct: 92325 gttataatatatagttgggaaaca 92348
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 296 tcgattaaaatgcataatattcaa 319 ||||| |||||||||||||||||| Sbjct: 1096851 tcgatgaaaatgcataatattcaa 1096828
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 296 tcgattaaaatgcataatattcaa 319 ||||| |||||||||||||||||| Sbjct: 1094572 tcgatgaaaatgcataatattcaa 1094549 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,012,062 Number of Sequences: 3902068 Number of extensions: 5012062 Number of successful extensions: 87475 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87382 Number of HSP's gapped (non-prelim): 93 length of query: 456 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 434 effective length of database: 17,147,199,772 effective search space: 7441884701048 effective search space used: 7441884701048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)