ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CLH_CAEEL (P34574) Probable clathrin heavy chain protein 1 30 3.5
2DPOL_ADEG1 (Q64751) DNA polymerase (EC 2.7.7.7) 28 7.9
3CR2_MOUSE (P19070) Complement receptor type 2 precursor (Cr2) (C... 28 7.9
4WNK1_HUMAN (Q9H4A3) Serine/threonine-protein kinase WNK1 (EC 2.7... 28 7.9

>CLH_CAEEL (P34574) Probable clathrin heavy chain protein 1|
          Length = 1681

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 448 LGIHRGTQLLPMGEDMNELVRLHTTKSQVPDMVMEESNRADLQG 317
           +GI+R  Q+L +  D   LV   T + Q PD+ ++ + R DL G
Sbjct: 314 MGINRKGQVLSVSIDEANLVPFVTNQLQNPDLALKLAVRCDLPG 357



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>DPOL_ADEG1 (Q64751) DNA polymerase (EC 2.7.7.7)|
          Length = 1121

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 326 ICPVAFLHNHVWHLGLCRV*ADQLVHVFPHWQQLCA 433
           +  +  LHN  W +   +V  D++  VFP W+ LCA
Sbjct: 602 VIDILTLHNRGWRV---QVLHDEMNIVFPEWKTLCA 634



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>CR2_MOUSE (P19070) Complement receptor type 2 precursor (Cr2) (Complement C3d|
           receptor) (CD21 antigen)
          Length = 1025

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 116 YFGKLSCDPSPESEKYRGSFATVYVVHT*IDRVEC 12
           YF ++SCDP PE +  R  + ++ +V   + R  C
Sbjct: 8   YFSEISCDPPPEVKNARKPYYSLPIVPGTVLRYTC 42



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>WNK1_HUMAN (Q9H4A3) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1)|
           (Protein kinase with no lysine 1) (Protein kinase,
           lysine-deficient 1) (Kinase deficient protein)
          Length = 2382

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +1

Query: 241 HFTAHFKPIGQPQDKLPTYLLELYSV 318
           H  AHF P+GQP   LPT LL  Y V
Sbjct: 819 HSGAHFLPVGQP---LPTPLLPQYPV 841


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,503,968
Number of Sequences: 219361
Number of extensions: 1257046
Number of successful extensions: 3178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3178
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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