ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC116781.9| Mus musculus chromosome 16, clone RP24-134G20, co... 36 7.3
2emb|CR974412.1| M.murinus DNA sequence from clone CH257-37C10, c... 36 7.3
3emb|AL807245.17| Mouse DNA sequence from clone RP23-102B2 on chr... 36 7.3
4emb|AL672244.15| Mouse DNA sequence from clone RP23-43I8 on chro... 36 7.3

>gb|AC116781.9| Mus musculus chromosome 16, clone RP24-134G20, complete sequence
          Length = 166568

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 30     aaactatgtctccaagga 47
              ||||||||||||||||||
Sbjct: 134277 aaactatgtctccaagga 134260



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>emb|CR974412.1| M.murinus DNA sequence from clone CH257-37C10, complete sequence
          Length = 250701

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 26     aggtaaactatgtctcca 43
              ||||||||||||||||||
Sbjct: 245037 aggtaaactatgtctcca 245054



 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     aggtaaactatgtctcca 43
              ||||||||||||||||||
Sbjct: 130193 aggtaaactatgtctcca 130176



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>emb|AL807245.17| Mouse DNA sequence from clone RP23-102B2 on chromosome 11, complete
            sequence
          Length = 114581

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 30   aaactatgtctccaagga 47
            ||||||||||||||||||
Sbjct: 6505 aaactatgtctccaagga 6488



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>emb|AL672244.15| Mouse DNA sequence from clone RP23-43I8 on chromosome 16, complete
              sequence
          Length = 243114

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 30     aaactatgtctccaagga 47
              ||||||||||||||||||
Sbjct: 172569 aaactatgtctccaagga 172586


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 262,770
Number of Sequences: 3902068
Number of extensions: 262770
Number of successful extensions: 47551
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47543
Number of HSP's gapped (non-prelim): 8
length of query: 53
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 33
effective length of database: 17,155,003,908
effective search space: 566115128964
effective search space used: 566115128964
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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