Clone Name | rbastl04h03 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_195184.1| Oryza sativa (japonica cultivar-group) putative cytosolic tRNA-Ala synthetase (OSJNBb0022I16.6), mRNA Length = 2085 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 347 cagcttcattgaagctatctgtgtagcaagctccatggcctccttgacccgagaagcatc 406 ||||||||||||||||||||| ||||||| |||||| || ||||| | |||| || || Sbjct: 2079 cagcttcattgaagctatctgggtagcaacctccatagcttcctttagttgagaggcctc 2020 Query: 407 acttccctggccctgagcgaggccattcttgcc 439 | ||||||||||||| || | ||||||||||| Sbjct: 2019 agttccctggccctgggcaattccattcttgcc 1987
>dbj|AK066368.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059M16, full insert sequence Length = 3214 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 347 cagcttcattgaagctatctgtgtagcaagctccatggcctccttgacccgagaagcatc 406 ||||||||||||||||||||| ||||||| |||||| || ||||| | |||| || || Sbjct: 3002 cagcttcattgaagctatctgggtagcaacctccatagcttcctttagttgagaggcctc 2943 Query: 407 acttccctggccctgagcgaggccattcttgcc 439 | ||||||||||||| || | ||||||||||| Sbjct: 2942 agttccctggccctgggcaattccattcttgcc 2910
>gb|AC091238.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0022I16, complete sequence Length = 127068 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 347 cagcttcattgaagctatctgtgtagcaagctccatggcctcctt 391 ||||||||||||||||||||| ||||||| |||||| || ||||| Sbjct: 56729 cagcttcattgaagctatctgggtagcaacctccatagcttcctt 56685
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 347 cagcttcattgaagctatctgtgtagcaagctccatggcctcctt 391 ||||||||||||||||||||| ||||||| |||||| || ||||| Sbjct: 5293531 cagcttcattgaagctatctgggtagcaacctccatagcttcctt 5293487
>gb|AY104750.1| Zea mays PCO077049 mRNA sequence Length = 3244 Score = 58.0 bits (29), Expect = 3e-05 Identities = 88/105 (83%), Gaps = 2/105 (1%) Strand = Plus / Minus Query: 339 aatcagctcagcttcattgaagctat-ctgtgtagcaagctccatggcctccttgacccg 397 ||||||| |||||||||||||| || |||| | ||||| |||| || ||||||| | | Sbjct: 3013 aatcagcagagcttcattgaagcaatgctgt-tcgcaagtgccattgcttccttgagctg 2955 Query: 398 agaagcatcacttccctggccctgagcgaggccattcttgccgcc 442 |||||| ||||| ||||||||||| |||| ||| ||||||||||| Sbjct: 2954 agaagcgtcactcccctggccctgggcgacgccgttcttgccgcc 2910
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 347 cagcttcattgaagctatctgtgtagcaagctccatggcctcctt 391 ||||||||||||||||||||| ||||||| |||||| || ||||| Sbjct: 5294318 cagcttcattgaagctatctgggtagcaacctccatagcttcctt 5294274
>emb|AL669853.5| Mouse DNA sequence from clone RP23-204F22 on chromosome 11 Contains part of the Abca13 gene for ATP-binding cassette sub-family A (ABC1) member 13, complete sequence Length = 205759 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 14 tctttttattaagatatgaatg 35 |||||||||||||||||||||| Sbjct: 102395 tctttttattaagatatgaatg 102416
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 15 ctttttattaagatatgaatgg 36 |||||||||||||||||||||| Sbjct: 25175700 ctttttattaagatatgaatgg 25175679 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tttttattaagatatgaatg 35 |||||||||||||||||||| Sbjct: 28278365 tttttattaagatatgaatg 28278384
>dbj|AP003220.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0035I14 Length = 117919 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 15 ctttttattaagatatgaatgg 36 |||||||||||||||||||||| Sbjct: 41709 ctttttattaagatatgaatgg 41688
>dbj|AK188701.1| Mus musculus cDNA, clone:Y0G0146D09, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000040729, based on BLAT search Length = 257 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 407 acttccctggccctgagcgag 427 ||||||||||||||||||||| Sbjct: 34 acttccctggccctgagcgag 14
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 372 gcaagctccatggcctccttg 392 ||||||||||||||||||||| Sbjct: 442005 gcaagctccatggcctccttg 441985
>emb|AL162633.3|CNS01RHY Human chromosome 14 DNA sequence BAC R-210O8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 164550 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 329 agtctcaacaaatcagctcagcttc 353 ||||||| ||||||||||||||||| Sbjct: 60085 agtctcatcaaatcagctcagcttc 60061
>emb|AL355073.5|CNS05TC7 Human chromosome 14 DNA sequence BAC R-930O11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 175988 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 329 agtctcaacaaatcagctcagcttc 353 ||||||| ||||||||||||||||| Sbjct: 154766 agtctcatcaaatcagctcagcttc 154790
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 372 gcaagctccatggcctccttg 392 ||||||||||||||||||||| Sbjct: 90648 gcaagctccatggcctccttg 90628
>gb|AC122560.8| Mus musculus chromosome 15, clone RP24-93E14, complete sequence Length = 174003 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 tctcaacaaatcagctcagc 350 |||||||||||||||||||| Sbjct: 108976 tctcaacaaatcagctcagc 108995
>ref|XM_859843.1| PREDICTED: Canis familiaris hypothetical protein LOC609670 (LOC609670), mRNA Length = 750 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 ctggccctgagcgaggccat 432 |||||||||||||||||||| Sbjct: 427 ctggccctgagcgaggccat 408
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 ctccatggcctccttgaccc 396 |||||||||||||||||||| Sbjct: 2062888 ctccatggcctccttgaccc 2062907
>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29 Length = 283100 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 gctccatggcctccttgacc 395 |||||||||||||||||||| Sbjct: 236046 gctccatggcctccttgacc 236065
>gb|AC147816.2| Xenopus tropicalis clone CH216-106C24, complete sequence Length = 152642 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 tctaaaagcacacttatcaagaga 321 ||||||||||||||||| |||||| Sbjct: 41122 tctaaaagcacacttattaagaga 41145
>emb|BX649538.4| Zebrafish DNA sequence from clone CH211-239N21 in linkage group 3, complete sequence Length = 147441 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 tcacttgtataagtgcagca 87 |||||||||||||||||||| Sbjct: 38883 tcacttgtataagtgcagca 38864
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 gctccatggcctccttgacc 395 |||||||||||||||||||| Sbjct: 7595821 gctccatggcctccttgacc 7595802
>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0478H03 Length = 167560 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tttttattaagatatgaatg 35 |||||||||||||||||||| Sbjct: 112872 tttttattaagatatgaatg 112891 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,411,912 Number of Sequences: 3902068 Number of extensions: 3411912 Number of successful extensions: 62040 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61898 Number of HSP's gapped (non-prelim): 141 length of query: 445 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 423 effective length of database: 17,147,199,772 effective search space: 7253265503556 effective search space used: 7253265503556 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)