ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl04h02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_506161.1| PREDICTED Oryza sativa (japonica cultivar-group), P0022E03.2 mRNA Length = 3539 Score = 165 bits (83), Expect = 2e-37 Identities = 128/143 (89%) Strand = Plus / Minus Query: 289 ctttgcggatgaccttgttgcaactgcaaagcactctctaggtgccagaggacttcgccc 348 |||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct: 3135 ctttgcagaagaccttgatgcaactgcaaagcactctctaggtgccacaggacttcacca 3076 Query: 349 atcgaaggccggttcaccccctcatctgcgaggcatttttctgctatctcgctgaatttc 408 |||||||||||| | ||| |||||||| ||||||||||| |||||||| ||||||||| Sbjct: 3075 atcgaaggccggcttctcccttcatctgcaaggcatttttcagctatctcactgaatttc 3016 Query: 409 ttgatggactccagtgtgtaatt 431 |||||||||||||||||||||| Sbjct: 3015 ctgatggactccagtgtgtaatt 2993 Score = 46.1 bits (23), Expect = 0.097 Identities = 32/35 (91%) Strand = Plus / Minus Query: 6 actgtaccaaaagaatttcagtatattgtagggac 40 |||||||||||| ||| |||||| ||||||||||| Sbjct: 3433 actgtaccaaaataatctcagtacattgtagggac 3399
>ref|XM_476621.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3109 Score = 165 bits (83), Expect = 2e-37 Identities = 128/143 (89%) Strand = Plus / Minus Query: 289 ctttgcggatgaccttgttgcaactgcaaagcactctctaggtgccagaggacttcgccc 348 |||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct: 2686 ctttgcagaagaccttgatgcaactgcaaagcactctctaggtgccacaggacttcacca 2627 Query: 349 atcgaaggccggttcaccccctcatctgcgaggcatttttctgctatctcgctgaatttc 408 |||||||||||| | ||| |||||||| ||||||||||| |||||||| ||||||||| Sbjct: 2626 atcgaaggccggcttctcccttcatctgcaaggcatttttcagctatctcactgaatttc 2567 Query: 409 ttgatggactccagtgtgtaatt 431 |||||||||||||||||||||| Sbjct: 2566 ctgatggactccagtgtgtaatt 2544 Score = 46.1 bits (23), Expect = 0.097 Identities = 32/35 (91%) Strand = Plus / Minus Query: 6 actgtaccaaaagaatttcagtatattgtagggac 40 |||||||||||| ||| |||||| ||||||||||| Sbjct: 2984 actgtaccaaaataatctcagtacattgtagggac 2950
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 165 bits (83), Expect = 2e-37 Identities = 128/143 (89%) Strand = Plus / Plus Query: 289 ctttgcggatgaccttgttgcaactgcaaagcactctctaggtgccagaggacttcgccc 348 |||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct: 2490851 ctttgcagaagaccttgatgcaactgcaaagcactctctaggtgccacaggacttcacca 2490910 Query: 349 atcgaaggccggttcaccccctcatctgcgaggcatttttctgctatctcgctgaatttc 408 |||||||||||| | ||| |||||||| ||||||||||| |||||||| ||||||||| Sbjct: 2490911 atcgaaggccggcttctcccttcatctgcaaggcatttttcagctatctcactgaatttc 2490970 Query: 409 ttgatggactccagtgtgtaatt 431 |||||||||||||||||||||| Sbjct: 2490971 ctgatggactccagtgtgtaatt 2490993 Score = 46.1 bits (23), Expect = 0.097 Identities = 32/35 (91%) Strand = Plus / Plus Query: 6 actgtaccaaaagaatttcagtatattgtagggac 40 |||||||||||| ||| |||||| ||||||||||| Sbjct: 2490553 actgtaccaaaataatctcagtacattgtagggac 2490587
>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0022E03 Length = 163032 Score = 165 bits (83), Expect = 2e-37 Identities = 128/143 (89%) Strand = Plus / Plus Query: 289 ctttgcggatgaccttgttgcaactgcaaagcactctctaggtgccagaggacttcgccc 348 |||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct: 55831 ctttgcagaagaccttgatgcaactgcaaagcactctctaggtgccacaggacttcacca 55890 Query: 349 atcgaaggccggttcaccccctcatctgcgaggcatttttctgctatctcgctgaatttc 408 |||||||||||| | ||| |||||||| ||||||||||| |||||||| ||||||||| Sbjct: 55891 atcgaaggccggcttctcccttcatctgcaaggcatttttcagctatctcactgaatttc 55950 Query: 409 ttgatggactccagtgtgtaatt 431 |||||||||||||||||||||| Sbjct: 55951 ctgatggactccagtgtgtaatt 55973 Score = 46.1 bits (23), Expect = 0.097 Identities = 32/35 (91%) Strand = Plus / Plus Query: 6 actgtaccaaaagaatttcagtatattgtagggac 40 |||||||||||| ||| |||||| ||||||||||| Sbjct: 55533 actgtaccaaaataatctcagtacattgtagggac 55567
>dbj|AK105705.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E02, full insert sequence Length = 2030 Score = 165 bits (83), Expect = 2e-37 Identities = 128/143 (89%) Strand = Plus / Minus Query: 289 ctttgcggatgaccttgttgcaactgcaaagcactctctaggtgccagaggacttcgccc 348 |||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct: 1605 ctttgcagaagaccttgatgcaactgcaaagcactctctaggtgccacaggacttcacca 1546 Query: 349 atcgaaggccggttcaccccctcatctgcgaggcatttttctgctatctcgctgaatttc 408 |||||||||||| | ||| |||||||| ||||||||||| |||||||| ||||||||| Sbjct: 1545 atcgaaggccggcttctcccttcatctgcaaggcatttttcagctatctcactgaatttc 1486 Query: 409 ttgatggactccagtgtgtaatt 431 |||||||||||||||||||||| Sbjct: 1485 ctgatggactccagtgtgtaatt 1463 Score = 46.1 bits (23), Expect = 0.097 Identities = 32/35 (91%) Strand = Plus / Minus Query: 6 actgtaccaaaagaatttcagtatattgtagggac 40 |||||||||||| ||| |||||| ||||||||||| Sbjct: 1903 actgtaccaaaataatctcagtacattgtagggac 1869
>dbj|AK102834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109J23, full insert sequence Length = 3540 Score = 165 bits (83), Expect = 2e-37 Identities = 128/143 (89%) Strand = Plus / Minus Query: 289 ctttgcggatgaccttgttgcaactgcaaagcactctctaggtgccagaggacttcgccc 348 |||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct: 3136 ctttgcagaagaccttgatgcaactgcaaagcactctctaggtgccacaggacttcacca 3077 Query: 349 atcgaaggccggttcaccccctcatctgcgaggcatttttctgctatctcgctgaatttc 408 |||||||||||| | ||| |||||||| ||||||||||| |||||||| ||||||||| Sbjct: 3076 atcgaaggccggcttctcccttcatctgcaaggcatttttcagctatctcactgaatttc 3017 Query: 409 ttgatggactccagtgtgtaatt 431 |||||||||||||||||||||| Sbjct: 3016 ctgatggactccagtgtgtaatt 2994 Score = 46.1 bits (23), Expect = 0.097 Identities = 32/35 (91%) Strand = Plus / Minus Query: 6 actgtaccaaaagaatttcagtatattgtagggac 40 |||||||||||| ||| |||||| ||||||||||| Sbjct: 3434 actgtaccaaaataatctcagtacattgtagggac 3400
>dbj|AK099551.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033H24, full insert sequence Length = 3109 Score = 165 bits (83), Expect = 2e-37 Identities = 128/143 (89%) Strand = Plus / Minus Query: 289 ctttgcggatgaccttgttgcaactgcaaagcactctctaggtgccagaggacttcgccc 348 |||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct: 2686 ctttgcagaagaccttgatgcaactgcaaagcactctctaggtgccacaggacttcacca 2627 Query: 349 atcgaaggccggttcaccccctcatctgcgaggcatttttctgctatctcgctgaatttc 408 |||||||||||| | ||| |||||||| ||||||||||| |||||||| ||||||||| Sbjct: 2626 atcgaaggccggcttctcccttcatctgcaaggcatttttcagctatctcactgaatttc 2567 Query: 409 ttgatggactccagtgtgtaatt 431 |||||||||||||||||||||| Sbjct: 2566 ctgatggactccagtgtgtaatt 2544 Score = 46.1 bits (23), Expect = 0.097 Identities = 32/35 (91%) Strand = Plus / Minus Query: 6 actgtaccaaaagaatttcagtatattgtagggac 40 |||||||||||| ||| |||||| ||||||||||| Sbjct: 2984 actgtaccaaaataatctcagtacattgtagggac 2950
>gb|AC104236.2| Homo sapiens chromosome 15, clone RP11-24J19, complete sequence Length = 160392 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Plus Query: 314 gcaaagcactctctaggtgccag 336 ||||||||||||||||||||||| Sbjct: 80994 gcaaagcactctctaggtgccag 81016
>ref|XM_630426.1| Dictyostelium discoideum hypothetical protein (DDB0219613), partial mRNA Length = 8907 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 caaaagaatttcagtatatt 32 |||||||||||||||||||| Sbjct: 7405 caaaagaatttcagtatatt 7424
>gb|AC022235.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-121E15, complete sequence Length = 197761 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 agaaggctgtgcttgagagt 265 |||||||||||||||||||| Sbjct: 34668 agaaggctgtgcttgagagt 34687
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 ttcgcccatcgaaggccggttcac 365 ||||||||||||||||||| |||| Sbjct: 4025281 ttcgcccatcgaaggccggctcac 4025304
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ggattgctcggcttctttga 229 |||||||||||||||||||| Sbjct: 4041078 ggattgctcggcttctttga 4041059
>gb|AC091839.2| Homo sapiens chromosome 5 clone CTD-2108O9, complete sequence Length = 133786 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 aacaacttgcccatctgaat 190 |||||||||||||||||||| Sbjct: 56031 aacaacttgcccatctgaat 56012
>emb|BX855621.15| Zebrafish DNA sequence from clone CH211-225C13, complete sequence Length = 178447 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 gtgtgtaattaccttccagt 441 |||||||||||||||||||| Sbjct: 131624 gtgtgtaattaccttccagt 131643
>gb|AC016751.7| Homo sapiens BAC clone RP11-504O20 from 2, complete sequence Length = 176379 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 aaagaatttcagtatattgt 34 |||||||||||||||||||| Sbjct: 81935 aaagaatttcagtatattgt 81916
>gb|AY880360.1| Gekko japonicus GekBS129P mRNA, complete cds Length = 1659 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 tacaagtaacatgcacctaa 83 |||||||||||||||||||| Sbjct: 1111 tacaagtaacatgcacctaa 1092 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,393,292 Number of Sequences: 3902068 Number of extensions: 3393292 Number of successful extensions: 70905 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70834 Number of HSP's gapped (non-prelim): 71 length of query: 445 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 423 effective length of database: 17,147,199,772 effective search space: 7253265503556 effective search space used: 7253265503556 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
