ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC077693.19| Oryza sativa chromosome 10 BAC OSJNBa0095C07 gen... 147 4e-32
2dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 147 4e-32
3dbj|AK062550.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 4e-32
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 147 4e-32
5gb|AY110501.1| Zea mays CL35774_1 mRNA sequence 66 1e-07
6ref|NM_197845.1| Oryza sativa (japonica cultivar-group) putative... 64 4e-07
7gb|AC157802.8| Mus musculus chromosome 1, clone RP24-297D18, com... 46 0.098
8emb|CR450841.7| Zebrafish DNA sequence from clone DKEY-16N9 in l... 44 0.39
9emb|AL138964.11| Human DNA sequence from clone RP11-30C8 on chro... 44 0.39
10dbj|AP004978.1| Lotus japonicus genomic DNA, chromosome 4, clone... 44 0.39
11gb|AC158302.3| Mus musculus chromosome 5, clone RP24-61O18, comp... 42 1.5
12emb|Z73102.1|CEB0035 Caenorhabditis elegans Cosmid B0035, comple... 42 1.5
13gb|AC073068.8| Homo sapiens BAC clone RP11-159I18 from 7, comple... 42 1.5
14gb|AC157990.4| Mus musculus chromosome 5, clone RP24-307I24, com... 42 1.5
15ref|NM_069723.3| Caenorhabditis elegans B0035.1b (B0035.1) mRNA,... 42 1.5
16dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 42 1.5
17gb|AC102730.15| Mus musculus chromosome 5, clone RP24-194J15, co... 42 1.5
18dbj|AP002455.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.5
19gb|AC152451.5| Mus musculus BAC clone RP24-309M5 from chromosome... 40 6.1
20gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 40 6.1
21ref|XM_421271.1| PREDICTED: Gallus gallus similar to FLJ00353 pr... 40 6.1
22gb|BC016420.1| Mus musculus tumor necrosis factor receptor super... 40 6.1
23ref|XM_957823.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.1
24ref|XM_326054.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.1
25gb|AY386697.1| Oryctolagus cuniculus clone 225P18, complete sequ... 40 6.1
26gb|AY386695.1| Oryctolagus cuniculus clone 219D23, complete sequ... 40 6.1
27gb|AC122013.4| Mus musculus BAC clone RP24-357P7 from chromosome... 40 6.1
28gb|AC125329.4| Mus musculus BAC clone RP23-198F7 from 10, comple... 40 6.1
29gb|BC059025.1| Mus musculus RIKEN cDNA 2810011L19 gene, mRNA (cD... 40 6.1
30gb|AC182805.3| Spermophilus tridecemlineatus clone VMRC20-147N6,... 40 6.1
31emb|AL353592.9| Human DNA sequence from clone RP11-569O12 on chr... 40 6.1
32gb|AC055753.21| Homo sapiens 3 BAC RP11-503I22 (Roswell Park Can... 40 6.1
33gb|DQ397638.1| Cenarchaeum symbiosum clone C16E09, complete sequ... 40 6.1
34dbj|AK134704.1| Mus musculus adult male medulla oblongata cDNA, ... 40 6.1
35dbj|AK045952.1| Mus musculus adult male corpora quadrigemina cDN... 40 6.1
36gb|AY043489.1| Mus musculus death receptor 6 mRNA, complete cds 40 6.1
37dbj|AK012713.1| Mus musculus 10, 11 days embryo whole body cDNA,... 40 6.1
38dbj|AK043823.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 40 6.1
39dbj|AK033529.1| Mus musculus adult male colon cDNA, RIKEN full-l... 40 6.1
40gb|AC140476.2| Homo sapiens BAC clone RP11-1294H20 from 2, compl... 40 6.1
41gb|AC155811.2| Mus musculus BAC clone RP24-185C13 from chromosom... 40 6.1
42gb|AF322069.1|AF322069 Mus musculus DR6 mRNA, complete cds 40 6.1
43ref|XM_236992.3| PREDICTED: Rattus norvegicus tumor necrosis fac... 40 6.1
44gb|AC108462.5| Homo sapiens BAC clone RP13-542C4 from 2, complet... 40 6.1
45gb|AC108489.5| Homo sapiens BAC clone RP13-981I10 from 2, comple... 40 6.1
46dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome 40 6.1
47emb|AJ506238.1|ATH506238 Arabidopsis thaliana single-copy transg... 40 6.1
48gb|AC007918.2|F28J9 Arabidopsis thaliana chromosome 1 BAC F28J9 ... 40 6.1
49emb|AL109759.4|CNS018OW Human chromosome 14 DNA sequence BAC R-8... 40 6.1
50gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 6.1
51gb|AC127582.4| Mus musculus BAC clone RP24-89J3 from 12, complet... 40 6.1
52ref|NM_178589.2| Mus musculus tumor necrosis factor receptor sup... 40 6.1
53dbj|AB056766.1| Macaca fascicularis brain cDNA clone:QnpA-10908,... 40 6.1 
>gb|AC077693.19| Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete
              sequence
          Length = 187707

 Score =  147 bits (74), Expect = 4e-32
 Identities = 136/154 (88%), Gaps = 2/154 (1%)
 Strand = Plus / Plus

                                                                          
Query: 131    cataatttaacaactataccaatacttctaccctgtctaaactccataaagttaaaacac 190
              |||||||||||| |||||||| |||| ||||||||||||||| ||||||||| |||||||
Sbjct: 184268 cataatttaacagctatacca-tactactaccctgtctaaaccccataaagt-aaaacac 184325

                                                                          
Query: 191    agcacaaaactgtacacccgcatatctaaagatgaaaagaagtgtttatgccaggcttct 250
              ||||||||||||||||| |  ||||||| ||| | || |||||||| |||||||| ||||
Sbjct: 184326 agcacaaaactgtacactcaaatatctagagaagcaatgaagtgttcatgccaggtttct 184385

                                                
Query: 251    ccggcagaaactgctttatctccggagcctggtt 284
              | |||||||||||||| |||||  ||||||||||
Sbjct: 184386 ctggcagaaactgcttcatctcaagagcctggtt 184419



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 52/60 (86%), Gaps = 2/60 (3%)
 Strand = Plus / Plus

                                                                          
Query: 20     aactaaaactccatagaccaaacaaaatgcagcagtc-aataccatcagcagaccagcat 78
              ||||||||| ||||| | || ||||||||||| || | |||||||||| |||||||||||
Sbjct: 184160 aactaaaacaccata-atcacacaaaatgcagaagcctaataccatcaccagaccagcat 184218
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  147 bits (74), Expect = 4e-32
 Identities = 136/154 (88%), Gaps = 2/154 (1%)
 Strand = Plus / Plus

                                                                            
Query: 131      cataatttaacaactataccaatacttctaccctgtctaaactccataaagttaaaacac 190
                |||||||||||| |||||||| |||| ||||||||||||||| ||||||||| |||||||
Sbjct: 22179324 cataatttaacagctatacca-tactactaccctgtctaaaccccataaagt-aaaacac 22179381

                                                                            
Query: 191      agcacaaaactgtacacccgcatatctaaagatgaaaagaagtgtttatgccaggcttct 250
                ||||||||||||||||| |  ||||||| ||| | || |||||||| |||||||| ||||
Sbjct: 22179382 agcacaaaactgtacactcaaatatctagagaagcaatgaagtgttcatgccaggtttct 22179441

                                                  
Query: 251      ccggcagaaactgctttatctccggagcctggtt 284
                | |||||||||||||| |||||  ||||||||||
Sbjct: 22179442 ctggcagaaactgcttcatctcaagagcctggtt 22179475



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 52/60 (86%), Gaps = 2/60 (3%)
 Strand = Plus / Plus

                                                                            
Query: 20       aactaaaactccatagaccaaacaaaatgcagcagtc-aataccatcagcagaccagcat 78
                ||||||||| ||||| | || ||||||||||| || | |||||||||| |||||||||||
Sbjct: 22179216 aactaaaacaccata-atcacacaaaatgcagaagcctaataccatcaccagaccagcat 22179274
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>dbj|AK062550.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-G12, full
           insert sequence
          Length = 722

 Score =  147 bits (74), Expect = 4e-32
 Identities = 136/154 (88%), Gaps = 2/154 (1%)
 Strand = Plus / Minus

                                                                       
Query: 131 cataatttaacaactataccaatacttctaccctgtctaaactccataaagttaaaacac 190
           |||||||||||| |||||||| |||| ||||||||||||||| ||||||||| |||||||
Sbjct: 563 cataatttaacagctatacca-tactactaccctgtctaaaccccataaagt-aaaacac 506

                                                                       
Query: 191 agcacaaaactgtacacccgcatatctaaagatgaaaagaagtgtttatgccaggcttct 250
           ||||||||||||||||| |  ||||||| ||| | || |||||||| |||||||| ||||
Sbjct: 505 agcacaaaactgtacactcaaatatctagagaagcaatgaagtgttcatgccaggtttct 446

                                             
Query: 251 ccggcagaaactgctttatctccggagcctggtt 284
           | |||||||||||||| |||||  ||||||||||
Sbjct: 445 ctggcagaaactgcttcatctcaagagcctggtt 412



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 52/60 (86%), Gaps = 2/60 (3%)
 Strand = Plus / Minus

                                                                       
Query: 20  aactaaaactccatagaccaaacaaaatgcagcagtc-aataccatcagcagaccagcat 78
           ||||||||| ||||| | || ||||||||||| || | |||||||||| |||||||||||
Sbjct: 671 aactaaaacaccata-atcacacaaaatgcagaagcctaataccatcaccagaccagcat 613
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  147 bits (74), Expect = 4e-32
 Identities = 136/154 (88%), Gaps = 2/154 (1%)
 Strand = Plus / Plus

                                                                            
Query: 131      cataatttaacaactataccaatacttctaccctgtctaaactccataaagttaaaacac 190
                |||||||||||| |||||||| |||| ||||||||||||||| ||||||||| |||||||
Sbjct: 22191387 cataatttaacagctatacca-tactactaccctgtctaaaccccataaagt-aaaacac 22191444

                                                                            
Query: 191      agcacaaaactgtacacccgcatatctaaagatgaaaagaagtgtttatgccaggcttct 250
                ||||||||||||||||| |  ||||||| ||| | || |||||||| |||||||| ||||
Sbjct: 22191445 agcacaaaactgtacactcaaatatctagagaagcaatgaagtgttcatgccaggtttct 22191504

                                                  
Query: 251      ccggcagaaactgctttatctccggagcctggtt 284
                | |||||||||||||| |||||  ||||||||||
Sbjct: 22191505 ctggcagaaactgcttcatctcaagagcctggtt 22191538



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 52/60 (86%), Gaps = 2/60 (3%)
 Strand = Plus / Plus

                                                                            
Query: 20       aactaaaactccatagaccaaacaaaatgcagcagtc-aataccatcagcagaccagcat 78
                ||||||||| ||||| | || ||||||||||| || | |||||||||| |||||||||||
Sbjct: 22191279 aactaaaacaccata-atcacacaaaatgcagaagcctaataccatcaccagaccagcat 22191337
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>gb|AY110501.1| Zea mays CL35774_1 mRNA sequence
          Length = 866

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 100/122 (81%), Gaps = 9/122 (7%)
 Strand = Plus / Plus

                                                                       
Query: 152 atacttctaccctgtctaaactccataaagttaaaacacagcacaaaactgtacacccgc 211
           ||||||||||||||||||||||||||| ||        | |||||||||||||||| |||
Sbjct: 128 atacttctaccctgtctaaactccatacag--------ctgcacaaaactgtacactcgc 179

                                                                       
Query: 212 atatctaaagatgaaaagaagtgtttatgccaggcttctccggcagaaactgctttatct 271
           | ||||||||  |  |  ||||||||||||| |||||||||||||| || ||||| ||||
Sbjct: 180 aaatctaaag-gggcattaagtgtttatgcctggcttctccggcaggaattgcttcatct 238

             
Query: 272 cc 273
           ||
Sbjct: 239 cc 240
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>ref|NM_197845.1| Oryza sativa (japonica cultivar-group) putative DNA-binding protein
            (OSJNBa0095C07.35), mRNA
          Length = 2949

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                    
Query: 229  gaagtgtttatgccaggcttctccggcagaaactgctttatctccggagcctggtt 284
            |||||||| |||||||| ||||| |||||||||||||| |||||  ||||||||||
Sbjct: 2936 gaagtgttcatgccaggtttctctggcagaaactgcttcatctcaagagcctggtt 2881
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>gb|AC157802.8| Mus musculus chromosome 1, clone RP24-297D18, complete sequence
          Length = 154309

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 315   aagagaaagagacagcgaatgat 337
             |||||||||||||||||||||||
Sbjct: 28806 aagagaaagagacagcgaatgat 28828
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>emb|CR450841.7| Zebrafish DNA sequence from clone DKEY-16N9 in linkage group 11,
            complete sequence
          Length = 263287

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 387  cagggatagtgacaacagaggggaggatcc 416
            |||||||||||||||||| || ||||||||
Sbjct: 4830 cagggatagtgacaacaggggtgaggatcc 4801
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>emb|AL138964.11| Human DNA sequence from clone RP11-30C8 on chromosome 13 Contains a
             pseudogene similar to part of a serine/threonine kinase
             and the 3' end of a novel gene, complete sequence
          Length = 44623

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 298   ccagggagagggaggccaagag 319
             ||||||||||||||||||||||
Sbjct: 38227 ccagggagagggaggccaagag 38206
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>dbj|AP004978.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT44L05, TM0162a,
             complete sequence
          Length = 92619

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 32    atagaccaaacaaaatgcagca 53
             ||||||||||||||||||||||
Sbjct: 36813 atagaccaaacaaaatgcagca 36792
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>gb|AC158302.3| Mus musculus chromosome 5, clone RP24-61O18, complete sequence
          Length = 215326

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 184   aaaacacagcacaaaactgta 204
             |||||||||||||||||||||
Sbjct: 16656 aaaacacagcacaaaactgta 16676
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>emb|Z73102.1|CEB0035 Caenorhabditis elegans Cosmid B0035, complete sequence
          Length = 39483

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 322   agagacagcgaatgatcatct 342
             |||||||||||||||||||||
Sbjct: 17992 agagacagcgaatgatcatct 17972
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>gb|AC073068.8| Homo sapiens BAC clone RP11-159I18 from 7, complete sequence
          Length = 171058

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 308    ggaggccaagagaaagagaca 328
              |||||||||||||||||||||
Sbjct: 133098 ggaggccaagagaaagagaca 133118
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>gb|AC157990.4| Mus musculus chromosome 5, clone RP24-307I24, complete sequence
          Length = 153860

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 184   aaaacacagcacaaaactgta 204
             |||||||||||||||||||||
Sbjct: 20635 aaaacacagcacaaaactgta 20615
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>ref|NM_069723.3| Caenorhabditis elegans B0035.1b (B0035.1) mRNA, complete cds
          Length = 1215

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 322 agagacagcgaatgatcatct 342
           |||||||||||||||||||||
Sbjct: 999 agagacagcgaatgatcatct 979
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>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 292    gcaacgccagggagagggagg 312
              |||||||||||||||||||||
Sbjct: 998237 gcaacgccagggagagggagg 998217
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>gb|AC102730.15| Mus musculus chromosome 5, clone RP24-194J15, complete sequence
          Length = 167135

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 184   aaaacacagcacaaaactgta 204
             |||||||||||||||||||||
Sbjct: 92526 aaaacacagcacaaaactgta 92546
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>dbj|AP002455.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-93M11, complete
             sequence
          Length = 64000

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 299   cagggagagggaggccaagagaaag 323
             ||||||||||||| |||||||||||
Sbjct: 41343 cagggagagggagaccaagagaaag 41319
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>gb|AC152451.5| Mus musculus BAC clone RP24-309M5 from chromosome 12, complete sequence
          Length = 145113

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   gggaggccaagagaaagaga 326
             ||||||||||||||||||||
Sbjct: 46684 gggaggccaagagaaagaga 46703
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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 115     ataagaccaagatgttcata 134
               ||||||||||||||||||||
Sbjct: 3131065 ataagaccaagatgttcata 3131084
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>ref|XM_421271.1| PREDICTED: Gallus gallus similar to FLJ00353 protein (LOC423356),
           mRNA
          Length = 7209

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 77  atgaaccaacagtggcagca 96
           ||||||||||||||||||||
Sbjct: 832 atgaaccaacagtggcagca 851
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>gb|BC016420.1| Mus musculus tumor necrosis factor receptor superfamily, member 21,
            mRNA (cDNA clone MGC:25901 IMAGE:4220624), complete cds
          Length = 2748

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 289  tttgcaacgccagggagagggagg 312
            ||||||||||||| ||||||||||
Sbjct: 1701 tttgcaacgccagcgagagggagg 1724
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>ref|XM_957823.1| Neurospora crassa OR74A hypothetical protein (NCU06200.1) partial
            mRNA
          Length = 1497

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 300  agggagagggaggccaagag 319
            ||||||||||||||||||||
Sbjct: 1447 agggagagggaggccaagag 1466
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>ref|XM_326054.1| Neurospora crassa OR74A hypothetical protein (NCU06200.1) partial
            mRNA
          Length = 1497

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 300  agggagagggaggccaagag 319
            ||||||||||||||||||||
Sbjct: 1447 agggagagggaggccaagag 1466
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>gb|AY386697.1| Oryctolagus cuniculus clone 225P18, complete sequence
          Length = 139446

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    gcctggtttccttttgcaac 296
              ||||||||||||||||||||
Sbjct: 124327 gcctggtttccttttgcaac 124308
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>gb|AY386695.1| Oryctolagus cuniculus clone 219D23, complete sequence
          Length = 137302

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 277   gcctggtttccttttgcaac 296
             ||||||||||||||||||||
Sbjct: 31218 gcctggtttccttttgcaac 31199
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>gb|AC122013.4| Mus musculus BAC clone RP24-357P7 from chromosome 12, complete sequence
          Length = 175788

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   gggaggccaagagaaagaga 326
             ||||||||||||||||||||
Sbjct: 40730 gggaggccaagagaaagaga 40711
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>gb|AC125329.4| Mus musculus BAC clone RP23-198F7 from 10, complete sequence
          Length = 211931

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      tattcacattccataactaa 25
              ||||||||||||||||||||
Sbjct: 158011 tattcacattccataactaa 157992
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>gb|BC059025.1| Mus musculus RIKEN cDNA 2810011L19 gene, mRNA (cDNA clone
           IMAGE:6810678), partial cds
          Length = 3306

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 307 gggaggccaagagaaagaga 326
           ||||||||||||||||||||
Sbjct: 766 gggaggccaagagaaagaga 785
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>gb|AC182805.3| Spermophilus tridecemlineatus clone VMRC20-147N6, complete sequence
          Length = 111681

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 132   ataatttaacaactataccaatac 155
             ||||||||||||||||||| ||||
Sbjct: 77919 ataatttaacaactatacctatac 77942
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>emb|AL353592.9| Human DNA sequence from clone RP11-569O12 on chromosome 13, complete
             sequence
          Length = 63325

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   atgaaaagaagtgtttatgc 241
             ||||||||||||||||||||
Sbjct: 56096 atgaaaagaagtgtttatgc 56077
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>gb|AC055753.21| Homo sapiens 3 BAC RP11-503I22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 167662

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 24    aaaactccatagaccaaacaaaat 47
             |||||||||||||| |||||||||
Sbjct: 98004 aaaactccatagacaaaacaaaat 98027
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>gb|DQ397638.1| Cenarchaeum symbiosum clone C16E09, complete sequence
          Length = 40387

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   ctccggcagaaactgcttta 268
             ||||||||||||||||||||
Sbjct: 35550 ctccggcagaaactgcttta 35531
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>dbj|AK134704.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
            enriched library, clone:6330530E01 product:tumor necrosis
            factor receptor superfamily, member 21, full insert
            sequence
          Length = 3598

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 289  tttgcaacgccagggagagggagg 312
            ||||||||||||| ||||||||||
Sbjct: 1723 tttgcaacgccagcgagagggagg 1746
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>dbj|AK045952.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230326M03
           product:unclassifiable, full insert sequence
          Length = 2878

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 307 gggaggccaagagaaagaga 326
           ||||||||||||||||||||
Sbjct: 520 gggaggccaagagaaagaga 539
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>gb|AY043489.1| Mus musculus death receptor 6 mRNA, complete cds
          Length = 1968

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 289  tttgcaacgccagggagagggagg 312
            ||||||||||||| ||||||||||
Sbjct: 1310 tttgcaacgccagcgagagggagg 1333
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>dbj|AK012713.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2810011L19 product:RIKEN cDNA
           2810011L19 gene, full insert sequence
          Length = 1108

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 307 gggaggccaagagaaagaga 326
           ||||||||||||||||||||
Sbjct: 414 gggaggccaagagaaagaga 433
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>dbj|AK043823.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched
            library, clone:A830037A05 product:Death Receptor 6, full
            insert sequence
          Length = 3628

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 289  tttgcaacgccagggagagggagg 312
            ||||||||||||| ||||||||||
Sbjct: 1754 tttgcaacgccagcgagagggagg 1777
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>dbj|AK033529.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched
            library, clone:9030604G24 product:death receptor 6, full
            insert sequence
          Length = 3597

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 289  tttgcaacgccagggagagggagg 312
            ||||||||||||| ||||||||||
Sbjct: 1728 tttgcaacgccagcgagagggagg 1751
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>gb|AC140476.2| Homo sapiens BAC clone RP11-1294H20 from 2, complete sequence
          Length = 172117

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   cagggagagggaggccaaga 318
             ||||||||||||||||||||
Sbjct: 93841 cagggagagggaggccaaga 93822
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>gb|AC155811.2| Mus musculus BAC clone RP24-185C13 from chromosome 12, complete
             sequence
          Length = 152790

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   taaactccataaagttaaaa 187
             ||||||||||||||||||||
Sbjct: 96840 taaactccataaagttaaaa 96821
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>gb|AF322069.1|AF322069 Mus musculus DR6 mRNA, complete cds
          Length = 1968

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 289  tttgcaacgccagggagagggagg 312
            ||||||||||||| ||||||||||
Sbjct: 1310 tttgcaacgccagcgagagggagg 1333
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>ref|XM_236992.3| PREDICTED: Rattus norvegicus tumor necrosis factor receptor
            superfamily, member 21 (predicted) (Tnfrsf21_predicted),
            mRNA
          Length = 3753

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 289  tttgcaacgccagggagagggagg 312
            ||||||||||||| ||||||||||
Sbjct: 3095 tttgcaacgccagcgagagggagg 3118
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>gb|AC108462.5| Homo sapiens BAC clone RP13-542C4 from 2, complete sequence
          Length = 161648

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   cagggagagggaggccaaga 318
             ||||||||||||||||||||
Sbjct: 74971 cagggagagggaggccaaga 74952
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>gb|AC108489.5| Homo sapiens BAC clone RP13-981I10 from 2, complete sequence
          Length = 167463

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   cagggagagggaggccaaga 318
             ||||||||||||||||||||
Sbjct: 48866 cagggagagggaggccaaga 48847
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>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome
          Length = 1738505

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 250    tccggcagaaactgctttatctcc 273
              |||||||| |||||||||||||||
Sbjct: 162494 tccggcaggaactgctttatctcc 162471
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>emb|AJ506238.1|ATH506238 Arabidopsis thaliana single-copy transgenic T-DNA insertion line,
           clone MDL-ArAr-126_LB
          Length = 737

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 211 catatctaaagatgaaaaga 230
           ||||||||||||||||||||
Sbjct: 593 catatctaaagatgaaaaga 574
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>gb|AC007918.2|F28J9 Arabidopsis thaliana chromosome 1 BAC F28J9 sequence, complete sequence
          Length = 115963

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   catatctaaagatgaaaaga 230
             ||||||||||||||||||||
Sbjct: 37824 catatctaaagatgaaaaga 37843
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>emb|AL109759.4|CNS018OW Human chromosome 14 DNA sequence BAC R-898B23 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 201794

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 220    agatgaaaagaagtgtttat 239
              ||||||||||||||||||||
Sbjct: 173207 agatgaaaagaagtgtttat 173188
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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 115     ataagaccaagatgttcata 134
               ||||||||||||||||||||
Sbjct: 3263268 ataagaccaagatgttcata 3263287
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>gb|AC127582.4| Mus musculus BAC clone RP24-89J3 from 12, complete sequence
          Length = 217949

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 168    taaactccataaagttaaaa 187
              ||||||||||||||||||||
Sbjct: 200088 taaactccataaagttaaaa 200107
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>ref|NM_178589.2| Mus musculus tumor necrosis factor receptor superfamily, member 21
            (Tnfrsf21), mRNA
          Length = 3628

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 289  tttgcaacgccagggagagggagg 312
            ||||||||||||| ||||||||||
Sbjct: 1754 tttgcaacgccagcgagagggagg 1777
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>dbj|AB056766.1| Macaca fascicularis brain cDNA clone:QnpA-10908, full insert
           sequence
          Length = 2797

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 299 cagggagagggaggccaaga 318
           ||||||||||||||||||||
Sbjct: 970 cagggagagggaggccaaga 951


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,106,597
Number of Sequences: 3902068
Number of extensions: 5106597
Number of successful extensions: 105595
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105407
Number of HSP's gapped (non-prelim): 180
length of query: 450
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 428
effective length of database: 17,147,199,772
effective search space: 7339001502416
effective search space used: 7339001502416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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