ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl04g11 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 87.0 bits (214), Expect = 2e-17 Identities = 40/50 (80%), Positives = 43/50 (86%) Frame = -2 Query: 465 QVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 +VV MN DP+LKNR GPAKFPYMLLYPNTSDH G A GLTA+G PNSISI Sbjct: 813 KVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 78.6 bits (192), Expect = 7e-15 Identities = 37/50 (74%), Positives = 41/50 (82%) Frame = -2 Query: 465 QVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 +VV MN D LKNR GPA+FPYMLLYPNTSD TG A G+TA+G PNSISI Sbjct: 817 KVVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 77.4 bits (189), Expect = 2e-14 Identities = 35/50 (70%), Positives = 41/50 (82%) Frame = -2 Query: 465 QVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 +V+ MN DP LKNR GPA FPY L++PNTSD+ G AEG+TARG PNSISI Sbjct: 814 KVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 75.9 bits (185), Expect = 5e-14 Identities = 36/50 (72%), Positives = 38/50 (76%) Frame = -2 Query: 465 QVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 +VVAMN DP KNR GP FPY LLYPNTSD G A GL+ARG PNSISI Sbjct: 821 RVVAMNKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 63.9 bits (154), Expect = 2e-10 Identities = 32/47 (68%), Positives = 35/47 (74%), Gaps = 1/47 (2%) Frame = -2 Query: 453 MNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQ-AEGLTARGTPNSISI 316 MN + LKNR GP K PYMLLYPNTSD T + +GLTA G PNSISI Sbjct: 831 MNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 55.5 bits (132), Expect = 7e-08 Identities = 28/51 (54%), Positives = 34/51 (66%) Frame = -2 Query: 468 KQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 K+++ N D L+NR GPAK PY LLYP++ EGLT RG PNSISI Sbjct: 809 KKLIEKNKDETLRNRYGPAKMPYTLLYPSSE------EGLTFRGIPNSISI 853
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 53.5 bits (127), Expect = 3e-07 Identities = 27/50 (54%), Positives = 32/50 (64%) Frame = -2 Query: 465 QVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 ++ A NSDP L+NRTGP + PY LL H EGLT +G PNSISI Sbjct: 821 KINARNSDPSLRNRTGPVQLPYTLL------HRSSEEGLTFKGIPNSISI 864
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 52.8 bits (125), Expect = 4e-07 Identities = 26/51 (50%), Positives = 33/51 (64%) Frame = -2 Query: 468 KQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 +++ N+D L+NR GP K PY LLYP++ EGLT RG PNSISI Sbjct: 822 EKLTQRNNDESLRNRYGPVKMPYTLLYPSSE------EGLTCRGIPNSISI 866
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 52.4 bits (124), Expect = 6e-07 Identities = 26/51 (50%), Positives = 34/51 (66%) Frame = -2 Query: 468 KQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 K++ N+D +L+NR GP + PY LLYP++ EGLT RG PNSISI Sbjct: 817 KKLTQRNNDEKLRNRHGPVEMPYTLLYPSSK------EGLTFRGIPNSISI 861
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 51.2 bits (121), Expect = 1e-06 Identities = 25/51 (49%), Positives = 31/51 (60%) Frame = -2 Query: 468 KQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 ++++ N D L+NR GP K PY +L P D EGLT RG PNSISI Sbjct: 817 EKIMGRNKDSSLRNRNGPVKMPYTVLLPTCED-----EGLTFRGIPNSISI 862
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 50.4 bits (119), Expect = 2e-06 Identities = 25/51 (49%), Positives = 32/51 (62%) Frame = -2 Query: 468 KQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 +++ N+D L NR GP + PY LL+PN +EGLT RG PNSISI Sbjct: 822 EKLARKNNDQSLSNRLGPVQLPYTLLHPN-------SEGLTCRGIPNSISI 865
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 50.4 bits (119), Expect = 2e-06 Identities = 27/52 (51%), Positives = 35/52 (67%), Gaps = 1/52 (1%) Frame = -2 Query: 468 KQVVAMNSDPQLK-NRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 +++V N+DP L+ NR GP + PY LLYP++ EGLT RG PNSISI Sbjct: 794 EKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSE------EGLTFRGIPNSISI 839
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 48.5 bits (114), Expect = 8e-06 Identities = 23/50 (46%), Positives = 31/50 (62%) Frame = -2 Query: 465 QVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 +++ MNS KNR+GP PY LL+P + EGLT +G PNS+SI Sbjct: 816 RIMIMNSHKSWKNRSGPVNVPYTLLFPTSE------EGLTGKGIPNSVSI 859
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 48.5 bits (114), Expect = 8e-06 Identities = 24/45 (53%), Positives = 30/45 (66%) Frame = -2 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 N+DP L +R GP + PY LL+P++ EGLT RG PNSISI Sbjct: 826 NNDPSLYHRVGPVQLPYTLLHPSSK------EGLTFRGIPNSISI 864
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 48.1 bits (113), Expect = 1e-05 Identities = 24/44 (54%), Positives = 30/44 (68%) Frame = -2 Query: 468 KQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARG 337 K++V N+D L+NRTGPAK PY LLYP++ EGLT RG Sbjct: 703 KKLVQKNNDETLRNRTGPAKMPYTLLYPSSE------EGLTFRG 740
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 47.8 bits (112), Expect = 1e-05 Identities = 24/45 (53%), Positives = 30/45 (66%) Frame = -2 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 N+D +L+NR GP + PY LL P++ EGLT RG PNSISI Sbjct: 819 NNDEKLRNRCGPVQMPYTLLLPSSK------EGLTFRGIPNSISI 857
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 47.4 bits (111), Expect = 2e-05 Identities = 24/51 (47%), Positives = 30/51 (58%) Frame = -2 Query: 468 KQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 K + N D LKNRTG K PY LL+P++ G+T RG PNS+SI Sbjct: 815 KNIDERNDDETLKNRTGLVKMPYTLLFPSSEG------GVTGRGIPNSVSI 859
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 47.4 bits (111), Expect = 2e-05 Identities = 23/51 (45%), Positives = 30/51 (58%) Frame = -2 Query: 468 KQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 KQ++ N D L NR+GP PY LL+P + GLT +G PNS+SI Sbjct: 817 KQIIQRNGDNILTNRSGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 861
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 46.2 bits (108), Expect = 4e-05 Identities = 23/51 (45%), Positives = 30/51 (58%) Frame = -2 Query: 468 KQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 KQ++ N + L NRTGP PY LL+P + GLT +G PNS+SI Sbjct: 816 KQIMQRNGNNILTNRTGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 860
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 39.7 bits (91), Expect = 0.004 Identities = 18/51 (35%), Positives = 29/51 (56%) Frame = -2 Query: 468 KQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 +++ N+DP +NR G PY L+ P++ G+T RG PNS++I Sbjct: 855 EEIERRNADPSRRNRCGAGVLPYELMAPSS------GPGITCRGVPNSVTI 899
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 39.3 bits (90), Expect = 0.005 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Frame = -2 Query: 468 KQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTG----QAEGLTARGTPNSISI 316 +QV N+DP KNR G PY+LL P+ D T + + G PNSISI Sbjct: 882 EQVDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 37.7 bits (86), Expect = 0.015 Identities = 21/45 (46%), Positives = 26/45 (57%) Frame = -2 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 N++P+ KNR G PY LL P + G+T RG PNSISI Sbjct: 858 NNNPENKNRCGAGIVPYELLKPFSE------PGVTGRGIPNSISI 896
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 37.4 bits (85), Expect = 0.019 Identities = 21/45 (46%), Positives = 25/45 (55%) Frame = -2 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 N+D KNR G PY LL P++ G+T RG PNSISI Sbjct: 880 NADHGRKNRCGAGVLPYELLAPSSPP------GVTCRGVPNSISI 918
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 34.7 bits (78), Expect = 0.12 Identities = 19/45 (42%), Positives = 23/45 (51%) Frame = -2 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 N D +LKNR G PY L+ P + G+T G PNS SI Sbjct: 886 NKDRKLKNRCGAGILPYQLMKPFSD------SGVTGMGIPNSTSI 924
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 34.3 bits (77), Expect = 0.16 Identities = 19/45 (42%), Positives = 23/45 (51%) Frame = -2 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 N D +LKNR G PY L+ P + G+T G PNS SI Sbjct: 903 NKDRKLKNRCGAGILPYQLMKPFSD------AGVTGMGIPNSTSI 941
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 33.5 bits (75), Expect = 0.28 Identities = 20/51 (39%), Positives = 27/51 (52%) Frame = -2 Query: 468 KQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSISI 316 +QV N D +NR G PY+LL P + + A+ + G PNSISI Sbjct: 883 EQVEEWNKDDSRRNRHGAGVVPYVLLRP-LNGNPMDAKTVMEMGIPNSISI 932
>SYP_MYCTU (O05814) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA| ligase) (ProRS) Length = 582 Score = 31.2 bits (69), Expect = 1.4 Identities = 20/40 (50%), Positives = 23/40 (57%) Frame = +1 Query: 295 TTDVLRSDGYAVRGAPGGEPLGLSRVVGGVWVEQHVWELG 414 T DVL DG VR G +G+SR+V V EQH ELG Sbjct: 438 TADVLGEDGKPVRLTMGSYGIGVSRLV-AVVAEQHHDELG 476
>GCSP_PROAC (Q6A9R8) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)| (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 994 Score = 30.4 bits (67), Expect = 2.3 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = -1 Query: 463 GGGHELGPAAQEPHRAGQVPIHAALPKHLRPHGTGRGAHRQGH 335 GGG +GP A + H A +P H P++ P G GH Sbjct: 724 GGGPGVGPVAAKAHLAPFLPGHPLNPRNEHPLNDGGTVTHDGH 766
>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 2.3 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -1 Query: 418 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 329 A P H A P L H +G HRQGHPE Sbjct: 231 APDAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 2.3 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -1 Query: 418 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 329 A P H A P L H +G HRQGHPE Sbjct: 231 APNAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%) Frame = -1 Query: 442 PAAQEPHRAGQVPIHAALPKHLRPHGTGRG----AHRQGHPEQHIHL 314 P+ PHR +P H P+H PH H Q HP H H+ Sbjct: 380 PSPHTPHRPHGLPQHPQRPQHPAPHPQQHSQLQPPHSQ-HPPPHQHI 425
>SYL_TREPA (O83595) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 878 Score = 28.5 bits (62), Expect = 8.9 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 6/94 (6%) Frame = +1 Query: 169 TRRARTL--IALIIHAPAQLSVT----HTHTS*LRCKQARIAQKHEVSTTDVLRSDGYAV 330 T RA TL + ++ AP +VT H + ++ R A+K+++ TD+ + Sbjct: 256 TTRADTLFGVTYLVLAPEHEAVTALTTHAQRAAVQAYVQRAAKKNDLERTDLAKEKTGVF 315 Query: 331 RGAPGGEPLGLSRVVGGVWVEQHVWELGRPGAVL 432 GA P+ R+ VWV +V GAV+ Sbjct: 316 TGAYVRNPINDMRI--PVWVGDYVLVSYGTGAVM 347
>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2| Length = 1033 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/58 (32%), Positives = 26/58 (44%) Frame = -1 Query: 460 GGHELGPAAQEPHRAGQVPIHAALPKHLRPHGTGRGAHRQGHPEQHIHLI*ARPSSRP 287 GG GP Q P G P ++P RP G G G G P + ++ RP++ P Sbjct: 262 GGQGGGPRPQAP--GGNRPSPGSMP---RPQGGGAGPRPGGGPRPNPGMMPQRPAAGP 314
>NORR_SALTY (Q8ZMJ8) Anaerobic nitric oxide reductase transcription regulator| norR Length = 506 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +1 Query: 355 LGLSRVVGGVWVEQHVWELGRPGAVLELRVRVH 453 LGLSRVV +H+ G PG V EL +H Sbjct: 380 LGLSRVVLSPGARRHLLNYGWPGNVRELEHAIH 412
>NORR_SALTI (Q8Z4C6) Anaerobic nitric oxide reductase transcription regulator| norR Length = 506 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +1 Query: 355 LGLSRVVGGVWVEQHVWELGRPGAVLELRVRVH 453 LGLSRVV +H+ G PG V EL +H Sbjct: 380 LGLSRVVLSPGARRHLLNYGWPGNVRELEHAIH 412
>ZN410_HUMAN (Q86VK4) Zinc finger protein 410 (Zinc finger protein APA-1)| (Another partner for ARF 1) Length = 478 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -2 Query: 468 KQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGTPNSIS 319 K +V+MNS P L + L PNT+ G + + A G+P S+S Sbjct: 394 KNLVSMNSQPSLGGES--------LNLPNTNSILGVDDEVLAEGSPRSLS 435 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,623,844 Number of Sequences: 219361 Number of extensions: 1666413 Number of successful extensions: 4573 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 4377 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4544 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
