ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RNT_SALTY (P66684) Ribonuclease T (EC 3.1.13.-) (Exoribonuclease... 32 0.64
2RNT_SALTI (P66685) Ribonuclease T (EC 3.1.13.-) (Exoribonuclease... 32 0.64
3HOLB_BUCAI (P57435) DNA polymerase III delta' subunit (EC 2.7.7.7) 30 1.9
4GSC_DROME (P54366) Homeobox protein goosecoid 30 3.2
5SYI_DEIRA (Q9RUP8) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 30 3.2
6PRM2_HORSE (P15342) Sperm histone P2a (Protamine 2a) (ST2a) 30 3.2
7SDC3_CHICK (P26261) Syndecan-3 precursor 29 4.1
8RESA_PLAFN (P13831) Ring-infected erythrocyte surface antigen (F... 29 4.1
9RESA_PLAFF (P13830) Ring-infected erythrocyte surface antigen pr... 29 4.1
10VP40_ILTVT (P23984) Capsid protein P40 [Contains: Capsid protein... 29 4.1
11FA57A_HUMAN (Q8TBR7) Protein FAM57A (CT120 protein) 29 5.4
12NETB_DROME (Q24568) Netrin-B precursor 29 5.4
13UPL2_ARATH (Q8H0T4) E3 ubiquitin protein ligase UPL2 (EC 6.3.2.-... 28 7.1
14PRM2_ERYPA (Q9GKM0) Protamine-2 (Protamine-P2) (Sperm histone P2) 28 7.1
15HEMH_MYCAV (O07401) Ferrochelatase (EC 4.99.1.1) (Protoheme ferr... 28 7.1
16ZAN_PIG (Q28983) Zonadhesin precursor 28 7.1
17Y2976_XANAC (Q8PIC2) UPF0042 protein XAC2976 28 7.1
18PRM2_HYLLA (P35314) Protamine-2 (Protamine-P2) (Sperm histone P2) 28 7.1
19PRM2_SEMEN (Q9GKM1) Protamine-2 (Protamine-P2) (Sperm histone P2) 28 9.2
20PRM2_MACNE (P35298) Protamine-2 (Protamine-P2) (Sperm histone P2) 28 9.2
21PRM2_MACFU (P61253) Protamine-2 (Protamine-P2) (Sperm histone P2) 28 9.2
22PRM2_MACMU (P35297) Protamine-2 (Protamine-P2) (Sperm histone P2) 28 9.2

>RNT_SALTY (P66684) Ribonuclease T (EC 3.1.13.-) (Exoribonuclease T) (RNase T)|
          Length = 215

 Score = 32.0 bits (71), Expect = 0.64
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = -3

Query: 243 LSAVAAATVQLAERAHLQGDRDVHGYHQEPDAGADTHP*WLAF 115
           L  +AA T+++ E+  L  D  +H +H EP AGA+  P  LAF
Sbjct: 36  LLEIAAITLKMDEQGWLMPDMTLH-FHVEPFAGANLQPEALAF 77



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>RNT_SALTI (P66685) Ribonuclease T (EC 3.1.13.-) (Exoribonuclease T) (RNase T)|
          Length = 215

 Score = 32.0 bits (71), Expect = 0.64
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = -3

Query: 243 LSAVAAATVQLAERAHLQGDRDVHGYHQEPDAGADTHP*WLAF 115
           L  +AA T+++ E+  L  D  +H +H EP AGA+  P  LAF
Sbjct: 36  LLEIAAITLKMDEQGWLMPDMTLH-FHVEPFAGANLQPEALAF 77



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>HOLB_BUCAI (P57435) DNA polymerase III delta' subunit (EC 2.7.7.7)|
          Length = 326

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 20/78 (25%), Positives = 37/78 (47%)
 Frame = +1

Query: 13  PLEYKPHTDIIVKFLSSYICIYK*QKKRMLLAMHER*PLGVGISASIWFLMIPMHISISL 192
           P   KP+ +I+ ++          QKK+   A+  + P G+G+S  IWF+   +     +
Sbjct: 5   PWLIKPYNNIVQQY----------QKKKAHHAILIKTPRGIGVSLLIWFISKWLLCLKPI 54

Query: 193 KMGTFCELHGCSRDSAES 246
            + +  + HGC   SA +
Sbjct: 55  GLNSCDKCHGCKLMSANN 72



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>GSC_DROME (P54366) Homeobox protein goosecoid|
          Length = 419

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 35/123 (28%), Positives = 47/123 (38%), Gaps = 18/123 (14%)
 Frame = -3

Query: 411 RSSDQ*HFQPKSIAQRQRLRSPV-PVRVDFVVRSDHPNDTELHGEAVSPRGSGAHPR--- 244
           RS  +    P S +      SP+ P RV  +++  HP     H  A +  G  A P    
Sbjct: 153 RSGAESPASPNSNSSSSAAASPIRPQRVPAMLQ--HPGLHLGHLAAAAASGFAASPSDFL 210

Query: 243 ----------LSAVAAATVQLAE-RAHLQGDR---DVHGYHQEPDAGADTHP*WLAFMHG 106
                     + A A A V  A+ +AH+ G       HG+H     G   HP   A  HG
Sbjct: 211 VAYPNFYPNYMHAAAVAHVAAAQMQAHVSGAAAGLSGHGHHPHHPHGHPHHPHLGAHHHG 270

Query: 105 QQH 97
           Q H
Sbjct: 271 QHH 273



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>SYI_DEIRA (Q9RUP8) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 1078

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 166 IPMHISISLKMGTFCELHGCSRDSAE--SRMCATS 264
           +P+ IS+  K+G     HG SR+  E  +R+C TS
Sbjct: 94  LPVEISVEKKLGWLGRNHGASREELEEFNRLCRTS 128



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>PRM2_HORSE (P15342) Sperm histone P2a (Protamine 2a) (ST2a)|
          Length = 62

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -2

Query: 298 YRTARRSSITPRKWRTSSTQRCRGCNRAARRTCPSSGRSR-CAWVSSRTRCWR 143
           YR  RR   +PR+      +R R   R  RR C      R C  V  R RC R
Sbjct: 8   YRRYRRRCCSPRRLYRLRRRRYRSSRRRRRRPCRRRRHRRVCRRVRRRRRCCR 60



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>SDC3_CHICK (P26261) Syndecan-3 precursor|
          Length = 405

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
 Frame = -1

Query: 398 NNISSPRVLPNGSDSEAQFPSELISSCVATILMIQNCTEKQYHPAEVAHILDSALSRLQP 219
           ++ + PR LP  S S    P+E  ++  ++   +      Q  P E+  +LDS L    P
Sbjct: 220 SSTAKPRSLPKPSTSRTAEPTEKSTALPSSPTTLPPTEAPQVEPGELTTVLDSDLE--VP 277

Query: 218 CS---SQNVPIFREIEMCMGIIKNQMLALIPTPS 126
            S   S +  I  E E     + N+++A++  P+
Sbjct: 278 TSSGPSGDFEIQEEEETTRPELGNEVVAVVTPPA 311



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>RESA_PLAFN (P13831) Ring-infected erythrocyte surface antigen (Fragment)|
          Length = 760

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -1

Query: 281 KQYHPAEVAHILDSALSRLQPC----SSQNVPIFREIEMCMG 168
           +QY     AH+ +  L+ LQPC    S  NVPI  ++E   G
Sbjct: 435 EQYQKEREAHVSEYLLNILQPCIAGDSKWNVPIITKLEGLKG 476



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>RESA_PLAFF (P13830) Ring-infected erythrocyte surface antigen precursor|
          Length = 1073

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -1

Query: 281 KQYHPAEVAHILDSALSRLQPC----SSQNVPIFREIEMCMG 168
           +QY     AH+ +  L+ LQPC    S  NVPI  ++E   G
Sbjct: 649 EQYQKEREAHVSEYLLNILQPCIAGDSKWNVPIITKLEGLKG 690



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>VP40_ILTVT (P23984) Capsid protein P40 [Contains: Capsid protein VP24|
           (Assemblin) (Protease) (EC 3.4.21.97); Capsid protein
           VP22A; C-terminal peptide]
          Length = 586

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
 Frame = -3

Query: 372 AQRQRLRSPVPVRVDFVVRSDHPNDTELHGEAVSPRGSGAHPRLSAVAAATVQLAERAHL 193
           A+R   R PV    +F  RS         G  + PRG   HPRL +     +    R  L
Sbjct: 330 ARRDNDRRPVSPSREFSRRSRDSTHECSPGRDIWPRGFERHPRLESFMGPGMNHTYRPAL 389

Query: 192 QGDRDVHGY-----HQEPDAGADTHP*WLAFMHGQ 103
             D +  G      +Q P +    HP + +   GQ
Sbjct: 390 YEDPNFCGRFPYIPYQSPASTYPVHPNYYSSNFGQ 424



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>FA57A_HUMAN (Q8TBR7) Protein FAM57A (CT120 protein)|
          Length = 257

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = -2

Query: 226 CNRAARRTCPSSGRSRCAWVSSRTRCWR*YPPLVASVHAWPTTFSSFVI 80
           C  A RR+ P   R+ C  +S+R         LV+SVHA   T S  VI
Sbjct: 19  CTWALRRSQPGWSRTDCVMISTR---------LVSSVHAVLATGSGIVI 58



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>NETB_DROME (Q24568) Netrin-B precursor|
          Length = 793

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 144 RQHLVLDDTHAHLDLPEDG 200
           ++HL LDD H HLD   DG
Sbjct: 312 KKHLELDDDHLHLDYASDG 330



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>UPL2_ARATH (Q8H0T4) E3 ubiquitin protein ligase UPL2 (EC 6.3.2.-)|
           (Ubiquitin-protein ligase 2)
          Length = 3658

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 380 RVLPNGSDSEAQFPSELISSCVATI-LMIQNCTEKQYHPAEVAHI 249
           R+     +S+  FP + +   +  I L+++NCT KQ++ +   H+
Sbjct: 71  RIEEEFDESDPPFPKDAVLQVLRVIRLVLENCTNKQFYTSYEQHL 115



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>PRM2_ERYPA (Q9GKM0) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 103

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -2

Query: 286 RRSSITPRKWRTSSTQRCRGCNRAARRTCPSSGRSRCAWVSSRTRCWR 143
           RR   + R+      +R R C R  RR+C    R R    + R RC R
Sbjct: 55  RRRRCSQRRLHRIHRRRHRSCRRRRRRSCRHRRRHRRGCRTRRRRCRR 102



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>HEMH_MYCAV (O07401) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme|
           synthetase)
          Length = 335

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 265 RKWRTS-STQRCRGCNRAARRTCPSSGR 185
           R WRTS     CRG +R  RRT P+  R
Sbjct: 22  RSWRTSPGAAACRGTSRPRRRTLPAFRR 49



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>ZAN_PIG (Q28983) Zonadhesin precursor|
          Length = 2476

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = -1

Query: 416  PAAAATNNISS--PRVLPNGSDSEAQFPSELISSCVATILMIQNCTEKQ--YHPAEVAHI 249
            PA   + N  S  P  LP     E Q    ++S      L    CT ++  YHP   +  
Sbjct: 1470 PATCLSLNNPSYCPSTLPCAEGCECQ-KGHILSGTSCVPLSQCGCTTQRGSYHPVGESWY 1528

Query: 248  LDSALSRLQPCSSQN 204
             D++ SRL  CS+ N
Sbjct: 1529 TDNSCSRLCTCSAHN 1543



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>Y2976_XANAC (Q8PIC2) UPF0042 protein XAC2976|
          Length = 282

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -3

Query: 384 PKSIAQRQRLRSPVPVRVDFVVRSDHPNDTELHGEAVSPRGSGAHPRLS 238
           P++I + ++L  P+  + D V+ +   N  +L    V+    G+H RLS
Sbjct: 114 PEAITRERQLTEPLRTQADAVIDTSTLNVHQLRRRVVTEFALGSHDRLS 162



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>PRM2_HYLLA (P35314) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 102

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -2

Query: 286 RRSSITPRKWRTSSTQRCRGCNRAARRTCPSSGRSRCAWVSSRTRCWR 143
           RR   + R+      Q+ R C R  RR+C    R R    + R RC R
Sbjct: 54  RRRHCSRRRLHRIHRQQHRSCGRRRRRSCRQRRRHRRGCRTRRRRCRR 101



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>PRM2_SEMEN (Q9GKM1) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 103

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -2

Query: 298 YRTARRSSITPRKWRTSSTQRCRGCNRAARRTCPSSGRSRCAWVSSRTRCWR 143
           Y   RR   + R+      +R R C R  RR+C    R R    + R RC R
Sbjct: 51  YSHHRRRRCSRRRLYRIHRRRHRSCRRRRRRSCRHRRRHRRGCRTRRRRCRR 102



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>PRM2_MACNE (P35298) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 103

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -2

Query: 286 RRSSITPRKWRTSSTQRCRGCNRAARRTCPSSGRSRCAWVSSRTRCWR 143
           RR   + R+      +R R C R  RR+C    R R    + R RC R
Sbjct: 55  RRRRCSRRRLHRIHRRRHRSCRRRRRRSCRHRRRHRRGCRTRRRRCRR 102



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>PRM2_MACFU (P61253) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 103

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -2

Query: 286 RRSSITPRKWRTSSTQRCRGCNRAARRTCPSSGRSRCAWVSSRTRCWR 143
           RR   + R+      +R R C R  RR+C    R R    + R RC R
Sbjct: 55  RRRRCSRRRLHRIHRRRHRSCRRRRRRSCRHRRRHRRGCRTRRRRCRR 102



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>PRM2_MACMU (P35297) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 102

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -2

Query: 286 RRSSITPRKWRTSSTQRCRGCNRAARRTCPSSGRSRCAWVSSRTRCWR 143
           RR   + R+      +R R C R  RR+C    R R    + R RC R
Sbjct: 54  RRRHCSRRRLHRIHRRRHRSCRRRRRRSCRHRRRHRRGCRTRRRRCRR 101


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,087,083
Number of Sequences: 219361
Number of extensions: 1329102
Number of successful extensions: 4361
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 4233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4361
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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