ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl04g09 |
|---|---|
| Clone Library Name | barley_pub |
>RNT_SALTY (P66684) Ribonuclease T (EC 3.1.13.-) (Exoribonuclease T) (RNase T)| Length = 215 Score = 32.0 bits (71), Expect = 0.64 Identities = 18/43 (41%), Positives = 26/43 (60%) Frame = -3 Query: 243 LSAVAAATVQLAERAHLQGDRDVHGYHQEPDAGADTHP*WLAF 115 L +AA T+++ E+ L D +H +H EP AGA+ P LAF Sbjct: 36 LLEIAAITLKMDEQGWLMPDMTLH-FHVEPFAGANLQPEALAF 77
>RNT_SALTI (P66685) Ribonuclease T (EC 3.1.13.-) (Exoribonuclease T) (RNase T)| Length = 215 Score = 32.0 bits (71), Expect = 0.64 Identities = 18/43 (41%), Positives = 26/43 (60%) Frame = -3 Query: 243 LSAVAAATVQLAERAHLQGDRDVHGYHQEPDAGADTHP*WLAF 115 L +AA T+++ E+ L D +H +H EP AGA+ P LAF Sbjct: 36 LLEIAAITLKMDEQGWLMPDMTLH-FHVEPFAGANLQPEALAF 77
>HOLB_BUCAI (P57435) DNA polymerase III delta' subunit (EC 2.7.7.7)| Length = 326 Score = 30.4 bits (67), Expect = 1.9 Identities = 20/78 (25%), Positives = 37/78 (47%) Frame = +1 Query: 13 PLEYKPHTDIIVKFLSSYICIYK*QKKRMLLAMHER*PLGVGISASIWFLMIPMHISISL 192 P KP+ +I+ ++ QKK+ A+ + P G+G+S IWF+ + + Sbjct: 5 PWLIKPYNNIVQQY----------QKKKAHHAILIKTPRGIGVSLLIWFISKWLLCLKPI 54 Query: 193 KMGTFCELHGCSRDSAES 246 + + + HGC SA + Sbjct: 55 GLNSCDKCHGCKLMSANN 72
>GSC_DROME (P54366) Homeobox protein goosecoid| Length = 419 Score = 29.6 bits (65), Expect = 3.2 Identities = 35/123 (28%), Positives = 47/123 (38%), Gaps = 18/123 (14%) Frame = -3 Query: 411 RSSDQ*HFQPKSIAQRQRLRSPV-PVRVDFVVRSDHPNDTELHGEAVSPRGSGAHPR--- 244 RS + P S + SP+ P RV +++ HP H A + G A P Sbjct: 153 RSGAESPASPNSNSSSSAAASPIRPQRVPAMLQ--HPGLHLGHLAAAAASGFAASPSDFL 210 Query: 243 ----------LSAVAAATVQLAE-RAHLQGDR---DVHGYHQEPDAGADTHP*WLAFMHG 106 + A A A V A+ +AH+ G HG+H G HP A HG Sbjct: 211 VAYPNFYPNYMHAAAVAHVAAAQMQAHVSGAAAGLSGHGHHPHHPHGHPHHPHLGAHHHG 270 Query: 105 QQH 97 Q H Sbjct: 271 QHH 273
>SYI_DEIRA (Q9RUP8) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1078 Score = 29.6 bits (65), Expect = 3.2 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = +1 Query: 166 IPMHISISLKMGTFCELHGCSRDSAE--SRMCATS 264 +P+ IS+ K+G HG SR+ E +R+C TS Sbjct: 94 LPVEISVEKKLGWLGRNHGASREELEEFNRLCRTS 128
>PRM2_HORSE (P15342) Sperm histone P2a (Protamine 2a) (ST2a)| Length = 62 Score = 29.6 bits (65), Expect = 3.2 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Frame = -2 Query: 298 YRTARRSSITPRKWRTSSTQRCRGCNRAARRTCPSSGRSR-CAWVSSRTRCWR 143 YR RR +PR+ +R R R RR C R C V R RC R Sbjct: 8 YRRYRRRCCSPRRLYRLRRRRYRSSRRRRRRPCRRRRHRRVCRRVRRRRRCCR 60
>SDC3_CHICK (P26261) Syndecan-3 precursor| Length = 405 Score = 29.3 bits (64), Expect = 4.1 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 3/94 (3%) Frame = -1 Query: 398 NNISSPRVLPNGSDSEAQFPSELISSCVATILMIQNCTEKQYHPAEVAHILDSALSRLQP 219 ++ + PR LP S S P+E ++ ++ + Q P E+ +LDS L P Sbjct: 220 SSTAKPRSLPKPSTSRTAEPTEKSTALPSSPTTLPPTEAPQVEPGELTTVLDSDLE--VP 277 Query: 218 CS---SQNVPIFREIEMCMGIIKNQMLALIPTPS 126 S S + I E E + N+++A++ P+ Sbjct: 278 TSSGPSGDFEIQEEEETTRPELGNEVVAVVTPPA 311
>RESA_PLAFN (P13831) Ring-infected erythrocyte surface antigen (Fragment)| Length = 760 Score = 29.3 bits (64), Expect = 4.1 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Frame = -1 Query: 281 KQYHPAEVAHILDSALSRLQPC----SSQNVPIFREIEMCMG 168 +QY AH+ + L+ LQPC S NVPI ++E G Sbjct: 435 EQYQKEREAHVSEYLLNILQPCIAGDSKWNVPIITKLEGLKG 476
>RESA_PLAFF (P13830) Ring-infected erythrocyte surface antigen precursor| Length = 1073 Score = 29.3 bits (64), Expect = 4.1 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Frame = -1 Query: 281 KQYHPAEVAHILDSALSRLQPC----SSQNVPIFREIEMCMG 168 +QY AH+ + L+ LQPC S NVPI ++E G Sbjct: 649 EQYQKEREAHVSEYLLNILQPCIAGDSKWNVPIITKLEGLKG 690
>VP40_ILTVT (P23984) Capsid protein P40 [Contains: Capsid protein VP24| (Assemblin) (Protease) (EC 3.4.21.97); Capsid protein VP22A; C-terminal peptide] Length = 586 Score = 29.3 bits (64), Expect = 4.1 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 5/95 (5%) Frame = -3 Query: 372 AQRQRLRSPVPVRVDFVVRSDHPNDTELHGEAVSPRGSGAHPRLSAVAAATVQLAERAHL 193 A+R R PV +F RS G + PRG HPRL + + R L Sbjct: 330 ARRDNDRRPVSPSREFSRRSRDSTHECSPGRDIWPRGFERHPRLESFMGPGMNHTYRPAL 389 Query: 192 QGDRDVHGY-----HQEPDAGADTHP*WLAFMHGQ 103 D + G +Q P + HP + + GQ Sbjct: 390 YEDPNFCGRFPYIPYQSPASTYPVHPNYYSSNFGQ 424
>FA57A_HUMAN (Q8TBR7) Protein FAM57A (CT120 protein)| Length = 257 Score = 28.9 bits (63), Expect = 5.4 Identities = 19/49 (38%), Positives = 24/49 (48%) Frame = -2 Query: 226 CNRAARRTCPSSGRSRCAWVSSRTRCWR*YPPLVASVHAWPTTFSSFVI 80 C A RR+ P R+ C +S+R LV+SVHA T S VI Sbjct: 19 CTWALRRSQPGWSRTDCVMISTR---------LVSSVHAVLATGSGIVI 58
>NETB_DROME (Q24568) Netrin-B precursor| Length = 793 Score = 28.9 bits (63), Expect = 5.4 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 144 RQHLVLDDTHAHLDLPEDG 200 ++HL LDD H HLD DG Sbjct: 312 KKHLELDDDHLHLDYASDG 330
>UPL2_ARATH (Q8H0T4) E3 ubiquitin protein ligase UPL2 (EC 6.3.2.-)| (Ubiquitin-protein ligase 2) Length = 3658 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -1 Query: 380 RVLPNGSDSEAQFPSELISSCVATI-LMIQNCTEKQYHPAEVAHI 249 R+ +S+ FP + + + I L+++NCT KQ++ + H+ Sbjct: 71 RIEEEFDESDPPFPKDAVLQVLRVIRLVLENCTNKQFYTSYEQHL 115
>PRM2_ERYPA (Q9GKM0) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 103 Score = 28.5 bits (62), Expect = 7.1 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -2 Query: 286 RRSSITPRKWRTSSTQRCRGCNRAARRTCPSSGRSRCAWVSSRTRCWR 143 RR + R+ +R R C R RR+C R R + R RC R Sbjct: 55 RRRRCSQRRLHRIHRRRHRSCRRRRRRSCRHRRRHRRGCRTRRRRCRR 102
>HEMH_MYCAV (O07401) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 335 Score = 28.5 bits (62), Expect = 7.1 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = -2 Query: 265 RKWRTS-STQRCRGCNRAARRTCPSSGR 185 R WRTS CRG +R RRT P+ R Sbjct: 22 RSWRTSPGAAACRGTSRPRRRTLPAFRR 49
>ZAN_PIG (Q28983) Zonadhesin precursor| Length = 2476 Score = 28.5 bits (62), Expect = 7.1 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Frame = -1 Query: 416 PAAAATNNISS--PRVLPNGSDSEAQFPSELISSCVATILMIQNCTEKQ--YHPAEVAHI 249 PA + N S P LP E Q ++S L CT ++ YHP + Sbjct: 1470 PATCLSLNNPSYCPSTLPCAEGCECQ-KGHILSGTSCVPLSQCGCTTQRGSYHPVGESWY 1528 Query: 248 LDSALSRLQPCSSQN 204 D++ SRL CS+ N Sbjct: 1529 TDNSCSRLCTCSAHN 1543
>Y2976_XANAC (Q8PIC2) UPF0042 protein XAC2976| Length = 282 Score = 28.5 bits (62), Expect = 7.1 Identities = 14/49 (28%), Positives = 26/49 (53%) Frame = -3 Query: 384 PKSIAQRQRLRSPVPVRVDFVVRSDHPNDTELHGEAVSPRGSGAHPRLS 238 P++I + ++L P+ + D V+ + N +L V+ G+H RLS Sbjct: 114 PEAITRERQLTEPLRTQADAVIDTSTLNVHQLRRRVVTEFALGSHDRLS 162
>PRM2_HYLLA (P35314) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 102 Score = 28.5 bits (62), Expect = 7.1 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -2 Query: 286 RRSSITPRKWRTSSTQRCRGCNRAARRTCPSSGRSRCAWVSSRTRCWR 143 RR + R+ Q+ R C R RR+C R R + R RC R Sbjct: 54 RRRHCSRRRLHRIHRQQHRSCGRRRRRSCRQRRRHRRGCRTRRRRCRR 101
>PRM2_SEMEN (Q9GKM1) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 103 Score = 28.1 bits (61), Expect = 9.2 Identities = 17/52 (32%), Positives = 22/52 (42%) Frame = -2 Query: 298 YRTARRSSITPRKWRTSSTQRCRGCNRAARRTCPSSGRSRCAWVSSRTRCWR 143 Y RR + R+ +R R C R RR+C R R + R RC R Sbjct: 51 YSHHRRRRCSRRRLYRIHRRRHRSCRRRRRRSCRHRRRHRRGCRTRRRRCRR 102
>PRM2_MACNE (P35298) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 103 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -2 Query: 286 RRSSITPRKWRTSSTQRCRGCNRAARRTCPSSGRSRCAWVSSRTRCWR 143 RR + R+ +R R C R RR+C R R + R RC R Sbjct: 55 RRRRCSRRRLHRIHRRRHRSCRRRRRRSCRHRRRHRRGCRTRRRRCRR 102
>PRM2_MACFU (P61253) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 103 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -2 Query: 286 RRSSITPRKWRTSSTQRCRGCNRAARRTCPSSGRSRCAWVSSRTRCWR 143 RR + R+ +R R C R RR+C R R + R RC R Sbjct: 55 RRRRCSRRRLHRIHRRRHRSCRRRRRRSCRHRRRHRRGCRTRRRRCRR 102
>PRM2_MACMU (P35297) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 102 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -2 Query: 286 RRSSITPRKWRTSSTQRCRGCNRAARRTCPSSGRSRCAWVSSRTRCWR 143 RR + R+ +R R C R RR+C R R + R RC R Sbjct: 54 RRRHCSRRRLHRIHRRRHRSCRRRRRRSCRHRRRHRRGCRTRRRRCRR 101 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,087,083 Number of Sequences: 219361 Number of extensions: 1329102 Number of successful extensions: 4361 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4233 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4361 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
