ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precur... 48 6e-06
2WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7... 29 3.1
3PHR_METTH (P12769) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.... 29 3.1
4CUBN_CANFA (Q9TU53) Cubilin precursor 29 3.1
5MTH1_DROME (Q9VXD9) Probable G-protein coupled receptor Mth-like... 28 4.0
6AROC_BACHD (Q9KCB7) Chorismate synthase (EC 4.2.3.5) (5-enolpyru... 28 4.0
7LSD1_DROME (Q9VCI3) Lipid storage droplets surface-binding prote... 28 5.2
8Y1195_ZYMMO (Q5NN91) UPF0078 membrane protein ZMO1195 28 5.2
9XRN1_SCHPO (P40383) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Exonu... 28 6.8
10GATA_COREF (Q8FPZ0) Glutamyl-tRNA(Gln) amidotransferase subunit ... 28 6.8
11SPCS2_BRARE (Q5BJI9) Probable signal peptidase complex subunit 2... 25 7.4
12HEMO_RABIT (P20058) Hemopexin precursor 27 8.9
13PAT1_YEAST (P25644) Topoisomerase II-associated protein PAT1 27 8.9

>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC|
           2.7.11.1)
          Length = 942

 Score = 47.8 bits (112), Expect = 6e-06
 Identities = 22/28 (78%), Positives = 24/28 (85%)
 Frame = -2

Query: 402 LASLDNTQTSIPTKPPGFADSFTSADGR 319
           L SLDNTQ SIPT+P GFA+SFTS DGR
Sbjct: 915 LPSLDNTQMSIPTRPYGFAESFTSVDGR 942



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>WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1)|
           (Protein kinase with no lysine 4) (Protein kinase,
           lysine-deficient 4)
          Length = 1243

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 206 PCGGMPC*LSFDHVCIDVAFTLEIP 132
           P GG+P  L+  H+C+  AF L IP
Sbjct: 604 PPGGVPSSLAESHLCLPSAFALSIP 628



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>PHR_METTH (P12769) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 445

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
 Frame = +2

Query: 152 PHQYIHDQRRANMACHHK-----AKSSNIFKGR-EGGRGVEEAKGMNEQNDHLTGASDVA 313
           P +Y +  R    A  H      A+   +  G+  G   +   K + E  DH   A D+A
Sbjct: 319 PREYEYSLRELESASTHDPYWNAAQQEMVITGKMHGYMRMYWGKKILEWTDHPARAYDIA 378

Query: 314 VYLPSAEVKESANPGGFVGM 373
           +YL      +  +P GF G+
Sbjct: 379 LYLNDRYEIDGRDPNGFAGV 398



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>CUBN_CANFA (Q9TU53) Cubilin precursor|
          Length = 3620

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 123  GLPGNF*SKGHINTYMIKGELTWHATTRP 209
            G  G+F S G+ NTY    E  W+ TT P
Sbjct: 1394 GTTGSFSSPGYPNTYPPNKECIWYITTAP 1422



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>MTH1_DROME (Q9VXD9) Probable G-protein coupled receptor Mth-like 1 precursor|
           (Protein methuselah-like 1)
          Length = 676

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = +2

Query: 167 HDQRRANM---ACHH---KAKSSNIFKGREGGRGVEEAKGMNEQNDHLTGASDVAVYLPS 328
           H QR   +   AC H    A  + I  G  GG  +E+A G N Q   LTG   V++   S
Sbjct: 286 HTQREGEVKIIACQHLFSSAAGAGIHDGSIGGT-IEQANGQNLQKAVLTGGILVSIVFLS 344

Query: 329 A 331
           A
Sbjct: 345 A 345



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>AROC_BACHD (Q9KCB7) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 390

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +2

Query: 161 YIHDQRRANMACHHKAKSSNIFKGREGGRGVEEA-KGMNEQNDHLTGASDVAVYLPSAEV 337
           ++H  R+ +        S N FKG E G G E A K  +E +D +    +   Y      
Sbjct: 234 HVHYDRKLDAKIAAAVMSINAFKGVEFGIGFEAASKPGSEVHDEIAWDEERGYY------ 287

Query: 338 KESANPGGFVG 370
           ++S N GGF G
Sbjct: 288 RKSNNLGGFEG 298



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>LSD1_DROME (Q9VCI3) Lipid storage droplets surface-binding protein 1|
          Length = 431

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 19/102 (18%)
 Frame = +2

Query: 155 HQYIHDQRRANMACHHKAKSSNIFKGREGGRGVEEAKGMNEQNDH--------------- 289
           ++ + D+R A  A HH  + S   K R   R + EA+ + +Q+                 
Sbjct: 204 NEAVPDERGAIKAIHHGQRFSRKLKRRLTQRTIAEARALKKQSKEAIHVLFYAAELIATD 263

Query: 290 ----LTGASDVAVYLPSAEVKESANPGGFVGMLVWVLSRLAR 403
               +  A ++ VYL + E +  A P     ++V +    AR
Sbjct: 264 PKQAVQKAKELWVYLSADEPENQARPATLEQLIVLLTRESAR 305



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>Y1195_ZYMMO (Q5NN91) UPF0078 membrane protein ZMO1195|
          Length = 218

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +2

Query: 221 IFKGREGGRGVEEAKGMNEQNDHLTGASDVAVYLPSAEVKESANPGGFVGMLVWVLS 391
           ++ G  GG+GV    G++     + G      +L SA++   ++ GG VG +   +S
Sbjct: 114 VWLGFRGGKGVATMLGVSFAAWWVAGVVFAVAWLLSAKISRYSSVGGMVGAIAATIS 170



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>XRN1_SCHPO (P40383) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Exonuclease 2)|
            (Exonuclease II) (Exo II) (p140)
          Length = 1328

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 152  PHQYIHDQR-RANMACHHKAKSSNIFKGREGGRGVE-EAKGMNEQNDHL 292
            P   IH  + + +   HH    +   +GR G RG    +K +N ++DH+
Sbjct: 1270 PESLIHKSKSKFSKGNHHSTNGTQSIRGRGGKRGKPLRSKELNRKHDHI 1318



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>GATA_COREF (Q8FPZ0) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 497

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 23  DQINVEYKPTNPKTIFYLGSKLT 91
           +Q++V   PT P T F LG K+T
Sbjct: 412 EQVDVLVSPTTPSTAFKLGDKIT 434



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>SPCS2_BRARE (Q5BJI9) Probable signal peptidase complex subunit 2 (EC 3.4.-.-)|
           (Microsomal signal peptidase 25 kDa subunit) (SPase 25
           kDa subunit)
          Length = 201

 Score = 24.6 bits (52), Expect(2) = 7.4
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 208 GLVVACHVSSPLIMYVLMWPLL*KFPGSPRLTAWCCCYY 92
           G +  C VS    +  L+W  L  FP S  + A C   Y
Sbjct: 58  GRLFICTVSCLFTIVALIWDYLHPFPESKPVLACCVVSY 96



 Score = 21.6 bits (44), Expect(2) = 7.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 396 SLDNTQTSIPTKPPGFADSFTSADGR 319
           SLD+    +  +  G+ +SF   DGR
Sbjct: 34  SLDDAAKKVLIEKYGYLESFNLVDGR 59



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>HEMO_RABIT (P20058) Hemopexin precursor|
          Length = 460

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 150 GHINTYMIKGELTWHATTRPNPATFLKA 233
           GH + Y+IKG+  W  T+  N   + K+
Sbjct: 106 GHTSVYLIKGDKVWVYTSEKNEKVYPKS 133



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>PAT1_YEAST (P25644) Topoisomerase II-associated protein PAT1|
          Length = 796

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -3

Query: 392 WIT-PRPASRRSLQGLPIPSPLPMEDRPLRPKLRSDD 285
           W T P PA   S Q    P+P P +  PL+P L   D
Sbjct: 110 WSTAPPPAMAPSPQSTMAPAPAPQQMAPLQPILSMQD 146


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,736,243
Number of Sequences: 219361
Number of extensions: 962521
Number of successful extensions: 2976
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2973
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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