Clone Name | rbastl04g06 |
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Clone Library Name | barley_pub |
>dbj|AK106530.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-H05, full insert sequence Length = 2576 Score = 224 bits (113), Expect = 2e-55 Identities = 188/213 (88%) Strand = Plus / Minus Query: 190 aacaggctcgaatttacagatgcagtcgtatatgtttccgttgaaaagcttctctgccaa 249 |||||| || ||||||||||||||||| ||||| ||||| |||||||| || |||||||| Sbjct: 2262 aacaggttcaaatttacagatgcagtcatatatatttccattgaaaagtttttctgccaa 2203 Query: 250 cctctggttcttcaccatcgcaagcttcagagcatcgcacttgaaacgggcattcaggtt 309 ||||| ||||| |||||||| |||||||||| ||||||||| ||||||||||| ||||| Sbjct: 2202 tctctgattcttgaccatcgccagcttcagagtatcgcacttaaaacgggcattgaggtt 2143 Query: 310 ggtatgcagtgaccgccccatgccctctaagatcaacagatcagcatccttggcggcagc 369 ||||||||| || |||||||||||||||||||| |||| ||| ||||| || || ||||| Sbjct: 2142 ggtatgcagagatcgccccatgccctctaagattaacaaatctgcatctttcgctgcagc 2083 Query: 370 tgcaagctccgagctaacctgccggaaatcaat 402 ||||| || ||||||||||||||||||||||| Sbjct: 2082 agcaagttctgagctaacctgccggaaatcaat 2050
>gb|AY112114.1| Zea mays CL9990_1 mRNA sequence Length = 1055 Score = 123 bits (62), Expect = 5e-25 Identities = 135/161 (83%) Strand = Plus / Plus Query: 200 aatttacagatgcagtcgtatatgtttccgttgaaaagcttctctgccaacctctggttc 259 |||||||||||||||||||||| | || ||||| || ||||||| | ||| ||| Sbjct: 369 aatttacagatgcagtcgtatagactcccattgaagagnnnnnctgccaatcgctgattc 428 Query: 260 ttcaccatcgcaagcttcagagcatcgcacttgaaacgggcattcaggttggtatgcagt 319 || ||||| |||||||| |||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 429 ttgaccatagcaagctttagagcatcacacttaaaacgggcattgaggttggtatgcagt 488 Query: 320 gaccgccccatgccctctaagatcaacagatcagcatcctt 360 || ||||||||||| ||||| || |||| ||| |||||||| Sbjct: 489 gatcgccccatgccttctaaaattaacaaatctgcatcctt 529 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 374 agctccgagctaacctgccggaaatcaat 402 ||||| ||||||||||||||||||||||| Sbjct: 543 agctctgagctaacctgccggaaatcaat 571
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 97.6 bits (49), Expect = 3e-17 Identities = 64/69 (92%) Strand = Plus / Minus Query: 274 cttcagagcatcgcacttgaaacgggcattcaggttggtatgcagtgaccgccccatgcc 333 |||||||| ||||||||| ||||||||||| |||||||||||||| || ||||||||||| Sbjct: 20635578 cttcagagtatcgcacttaaaacgggcattgaggttggtatgcagagatcgccccatgcc 20635519 Query: 334 ctctaagat 342 ||||||||| Sbjct: 20635518 ctctaagat 20635510 Score = 83.8 bits (42), Expect = 4e-13 Identities = 75/86 (87%) Strand = Plus / Minus Query: 190 aacaggctcgaatttacagatgcagtcgtatatgtttccgttgaaaagcttctctgccaa 249 |||||| || ||||||||||||||||| ||||| ||||| |||||||| || |||||||| Sbjct: 20636545 aacaggttcaaatttacagatgcagtcatatatatttccattgaaaagtttttctgccaa 20636486 Query: 250 cctctggttcttcaccatcgcaagct 275 ||||| ||||| |||||||| |||| Sbjct: 20636485 tctctgattcttgaccatcgccagct 20636460 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 365 gcagctgcaagctccgagctaacctgccggaaatcaat 402 ||||| ||||| || ||||||||||||||||||||||| Sbjct: 20635382 gcagcagcaagttctgagctaacctgccggaaatcaat 20635345
>dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1112_E07 Length = 132055 Score = 97.6 bits (49), Expect = 3e-17 Identities = 64/69 (92%) Strand = Plus / Minus Query: 274 cttcagagcatcgcacttgaaacgggcattcaggttggtatgcagtgaccgccccatgcc 333 |||||||| ||||||||| ||||||||||| |||||||||||||| || ||||||||||| Sbjct: 29189 cttcagagtatcgcacttaaaacgggcattgaggttggtatgcagagatcgccccatgcc 29130 Query: 334 ctctaagat 342 ||||||||| Sbjct: 29129 ctctaagat 29121 Score = 83.8 bits (42), Expect = 4e-13 Identities = 75/86 (87%) Strand = Plus / Minus Query: 190 aacaggctcgaatttacagatgcagtcgtatatgtttccgttgaaaagcttctctgccaa 249 |||||| || ||||||||||||||||| ||||| ||||| |||||||| || |||||||| Sbjct: 30156 aacaggttcaaatttacagatgcagtcatatatatttccattgaaaagtttttctgccaa 30097 Query: 250 cctctggttcttcaccatcgcaagct 275 ||||| ||||| |||||||| |||| Sbjct: 30096 tctctgattcttgaccatcgccagct 30071 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 365 gcagctgcaagctccgagctaacctgccggaaatcaat 402 ||||| ||||| || ||||||||||||||||||||||| Sbjct: 28993 gcagcagcaagttctgagctaacctgccggaaatcaat 28956
>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0515E01 Length = 140063 Score = 97.6 bits (49), Expect = 3e-17 Identities = 64/69 (92%) Strand = Plus / Minus Query: 274 cttcagagcatcgcacttgaaacgggcattcaggttggtatgcagtgaccgccccatgcc 333 |||||||| ||||||||| ||||||||||| |||||||||||||| || ||||||||||| Sbjct: 101236 cttcagagtatcgcacttaaaacgggcattgaggttggtatgcagagatcgccccatgcc 101177 Query: 334 ctctaagat 342 ||||||||| Sbjct: 101176 ctctaagat 101168 Score = 83.8 bits (42), Expect = 4e-13 Identities = 75/86 (87%) Strand = Plus / Minus Query: 190 aacaggctcgaatttacagatgcagtcgtatatgtttccgttgaaaagcttctctgccaa 249 |||||| || ||||||||||||||||| ||||| ||||| |||||||| || |||||||| Sbjct: 102203 aacaggttcaaatttacagatgcagtcatatatatttccattgaaaagtttttctgccaa 102144 Query: 250 cctctggttcttcaccatcgcaagct 275 ||||| ||||| |||||||| |||| Sbjct: 102143 tctctgattcttgaccatcgccagct 102118 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 365 gcagctgcaagctccgagctaacctgccggaaatcaat 402 ||||| ||||| || ||||||||||||||||||||||| Sbjct: 101040 gcagcagcaagttctgagctaacctgccggaaatcaat 101003
>emb|AL160275.14| Human DNA sequence from clone RP11-402G3 on chromosome 9 Contains the ATP6V1G1 gene for ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G isoform 1 (ATP6G, ATP6GL), a novel gene (DKFZp547P234), a novel gene, a pseudogene similar to part of ribosomal protein L7 (RPL7), a pseudogene similar to part of ARP3 actin-related protein 3 homolog (yeast) (ACTR3) and three CpG islands, complete sequence Length = 189709 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 242 tctgccaacctctggttcttcacca 266 |||||||||||||||||||| |||| Sbjct: 176342 tctgccaacctctggttcttaacca 176318
>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence Length = 190055 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 cctttggtgctgctgtgcta 107 |||||||||||||||||||| Sbjct: 173640 cctttggtgctgctgtgcta 173621
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 cctttggtgctgctgtgcta 107 |||||||||||||||||||| Sbjct: 21480729 cctttggtgctgctgtgcta 21480710
>gb|AC160533.6| Mus musculus chromosome 5, clone RP24-242L17, complete sequence Length = 170409 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 ggtcactgagtacaacataa 76 |||||||||||||||||||| Sbjct: 114605 ggtcactgagtacaacataa 114624
>gb|AC002551.1|HUAC002551 Human Chromosome 16 BAC clone CIT987SK-A-951C11, complete sequence Length = 114411 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 cccatgccctctaagatcaa 345 |||||||||||||||||||| Sbjct: 71705 cccatgccctctaagatcaa 71686
>gb|AC142299.1| Pan troglodytes BAC clone RP43-121O18 from 7, complete sequence Length = 146878 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 299 gcattcaggttggtatgcagtgac 322 ||||||| |||||||||||||||| Sbjct: 25362 gcattcatgttggtatgcagtgac 25385
>emb|AL590014.1| Human DNA sequence from clone RP11-449I6 on chromosome 6 Contains part of the EPB41L2 gene for erythrocyte membrane protein band 4.1-like 2, complete sequence Length = 42959 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 cgttgaaaagcttctctgcc 247 |||||||||||||||||||| Sbjct: 17357 cgttgaaaagcttctctgcc 17338
>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 Length = 2005935 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 cagcatccttggcggcagct 370 |||||||||||||||||||| Sbjct: 1968779 cagcatccttggcggcagct 1968760
>gb|AC073184.5| Homo sapiens chromosome 7 clone CTD-2022G18, complete sequence Length = 71607 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 299 gcattcaggttggtatgcagtgac 322 ||||||| |||||||||||||||| Sbjct: 25125 gcattcatgttggtatgcagtgac 25148
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 cctttggtgctgctgtgcta 107 |||||||||||||||||||| Sbjct: 21473758 cctttggtgctgctgtgcta 21473739
>gb|AC134312.3| Homo sapiens chromosome 16 clone RP11-863P13, complete sequence Length = 205610 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cacggtcactgagtacaaca 73 |||||||||||||||||||| Sbjct: 38241 cacggtcactgagtacaaca 38222
>gb|AC127455.4| Homo sapiens chromosome 16 clone CTD-3057O21, complete sequence Length = 184641 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cacggtcactgagtacaaca 73 |||||||||||||||||||| Sbjct: 58534 cacggtcactgagtacaaca 58553
>gb|AC073612.17| Homo sapiens 12 BAC RP11-293I14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 54262 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 tctgccaacctctggttctt 261 |||||||||||||||||||| Sbjct: 13723 tctgccaacctctggttctt 13704
>gb|AC140001.8| Mus musculus chromosome 5, clone RP24-276E6, complete sequence Length = 130466 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 ggtcactgagtacaacataa 76 |||||||||||||||||||| Sbjct: 113018 ggtcactgagtacaacataa 113037
>dbj|BS000117.1| Pan troglodytes chromosome 22 clone:RP43-027E03, map 22, complete sequences Length = 155641 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 tcagcatccttggcggcagctgca 373 ||||||||||||| |||||||||| Sbjct: 97531 tcagcatccttgggggcagctgca 97554
>dbj|AB063285.1| Homo sapiens HLCS gene for holocarboxylase synthetase, complete cds Length = 250000 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 tcagcatccttggcggcagctgca 373 ||||||||||||| |||||||||| Sbjct: 202180 tcagcatccttgggggcagctgca 202157
>dbj|AP001727.1| Homo sapiens genomic DNA, chromosome 21q, section 71/105 Length = 340000 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 tcagcatccttggcggcagctgca 373 ||||||||||||| |||||||||| Sbjct: 11732 tcagcatccttgggggcagctgca 11755
>dbj|AP000698.1| Homo sapiens genomic DNA, chromosome 21q22.2, cosmid clone:D8F6, CBR1-HLCS region Length = 39159 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 tcagcatccttggcggcagctgca 373 ||||||||||||| |||||||||| Sbjct: 36396 tcagcatccttgggggcagctgca 36419 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,835,861 Number of Sequences: 3902068 Number of extensions: 2835861 Number of successful extensions: 48659 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48589 Number of HSP's gapped (non-prelim): 70 length of query: 402 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 380 effective length of database: 17,147,199,772 effective search space: 6515935913360 effective search space used: 6515935913360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)