ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04g05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473069.1| Oryza sativa (japonica cultivar-group), predic... 214 2e-52
2emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 214 2e-52
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 214 2e-52
4dbj|AK066572.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
5emb|AL357054.14| Human DNA sequence from clone RP11-532F6 on chr... 44 0.37
6emb|CR450826.8| Zebrafish DNA sequence from clone CH211-145J10 i... 42 1.5
7emb|CR450768.14| Zebrafish DNA sequence from clone CH211-225H10 ... 42 1.5
8gb|AC116759.13| Mus musculus chromosome 18, clone RP23-383E12, c... 40 5.7
9gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 5.7
10gb|AC115789.9| Mus musculus chromosome 18, clone RP23-398N2, com... 40 5.7
11gb|BC044148.1| Danio rerio thymidine kinase 1, soluble, mRNA (cD... 40 5.7
12ref|XM_864307.1| PREDICTED: Bos taurus similar to insulin-like 5... 40 5.7
13gb|AC122457.4| Mus musculus BAC clone RP24-266P11 from chromosom... 40 5.7
14gb|AY286123.1| Cyanidioschyzon merolae DBV201 chloroplast, compl... 40 5.7
15gb|AC153009.4| Mus musculus BAC clone RP23-408I18 from chromosom... 40 5.7
16emb|AL159972.8| Human DNA sequence from clone RP11-157H4 on chro... 40 5.7
17emb|BX323870.13| Zebrafish DNA sequence from clone DKEYP-70G1 in... 40 5.7
18emb|CR293511.11| Zebrafish DNA sequence from clone DKEY-93H22 in... 40 5.7
19ref|XM_697039.1| PREDICTED: Danio rerio hypothetical protein LOC... 40 5.7
20ref|NM_199832.1| Danio rerio thymidine kinase 1, soluble (tk1), ... 40 5.7
21emb|BX323563.10| Zebrafish DNA sequence from clone DKEY-20J10 in... 40 5.7
22gb|AF108903.1|AF108903 Neotoma magister microsatellite Nma09 seq... 40 5.7
23gb|AC020595.7| Homo sapiens BAC clone RP11-358M9 from 2, complet... 40 5.7
24emb|AL935114.8| Zebrafish DNA sequence from clone CH211-182P11, ... 40 5.7
25emb|AL672097.5| Zebrafish DNA sequence from clone BUSM1-37O5 in ... 40 5.7
26dbj|AB002583.1| Cyanidioschyzon merolae chloroplast DNA, complet... 40 5.7
27gb|AC122426.5| Mus musculus BAC clone RP24-174I4 from 9, complet... 40 5.7
28gb|AC173483.1| Mus musculus BAC clone RP23-281C13 from chromosom... 40 5.7
29dbj|AP005020.1| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.7 
>ref|XM_473069.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3564

 Score =  214 bits (108), Expect = 2e-52
 Identities = 162/180 (90%)
 Strand = Plus / Minus

                                                                        
Query: 247  ctgtaccaactacatggatatggaatggggatccacggcataggataggttcgtctggtg 306
            |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |
Sbjct: 3559 ctgtaccaactacatggatatggaatggagatccacggcatagtataggttcgtcgggcg 3500

                                                                        
Query: 307  actctgcctttgcccgagcacgaagaacatctgtggcgtcaattataacagaagaagact 366
            ||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||  |
Sbjct: 3499 actctgcctttgcccgagcacgaagaacatcggttgcgtcaattataacagaagcagctt 3440

                                                                        
Query: 367  gcagcgagtagtctccaggtactaggaagtatacagagaaaggatgcatcacctcctgca 426
            |||||||||||||||| || || |||||||| | ||| |||||||| |  ||||||||||
Sbjct: 3439 gcagcgagtagtctccggggaccaggaagtagatagaaaaaggatgtactacctcctgca 3380
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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
              complete sequence
          Length = 173171

 Score =  214 bits (108), Expect = 2e-52
 Identities = 162/180 (90%)
 Strand = Plus / Minus

                                                                          
Query: 247    ctgtaccaactacatggatatggaatggggatccacggcataggataggttcgtctggtg 306
              |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |
Sbjct: 170825 ctgtaccaactacatggatatggaatggagatccacggcatagtataggttcgtcgggcg 170766

                                                                          
Query: 307    actctgcctttgcccgagcacgaagaacatctgtggcgtcaattataacagaagaagact 366
              ||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||  |
Sbjct: 170765 actctgcctttgcccgagcacgaagaacatcggttgcgtcaattataacagaagcagctt 170706

                                                                          
Query: 367    gcagcgagtagtctccaggtactaggaagtatacagagaaaggatgcatcacctcctgca 426
              |||||||||||||||| || || |||||||| | ||| |||||||| |  ||||||||||
Sbjct: 170705 gcagcgagtagtctccggggaccaggaagtagatagaaaaaggatgtactacctcctgca 170646



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 59/68 (86%), Gaps = 2/68 (2%)
 Strand = Plus / Minus

                                                                          
Query: 76     atgcttttacactgtacacaaacacaagtgtattacaaaggaagcctccgagtggctcaa 135
              |||||||||||||||||| |||||||| ||| |||| | |||||||| |  | |||||||
Sbjct: 170995 atgcttttacactgtaca-aaacacaactgtgttac-agggaagccttcatgcggctcaa 170938

                      
Query: 136    ataaatca 143
              ||||||||
Sbjct: 170937 ataaatca 170930



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 173    tacatgattttcacagctgcacatgtca 200
              |||||||| ||| |||||||||||||||
Sbjct: 170912 tacatgatcttcgcagctgcacatgtca 170885
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  214 bits (108), Expect = 2e-52
 Identities = 162/180 (90%)
 Strand = Plus / Minus

                                                                            
Query: 247      ctgtaccaactacatggatatggaatggggatccacggcataggataggttcgtctggtg 306
                |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |
Sbjct: 25050240 ctgtaccaactacatggatatggaatggagatccacggcatagtataggttcgtcgggcg 25050181

                                                                            
Query: 307      actctgcctttgcccgagcacgaagaacatctgtggcgtcaattataacagaagaagact 366
                ||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||  |
Sbjct: 25050180 actctgcctttgcccgagcacgaagaacatcggttgcgtcaattataacagaagcagctt 25050121

                                                                            
Query: 367      gcagcgagtagtctccaggtactaggaagtatacagagaaaggatgcatcacctcctgca 426
                |||||||||||||||| || || |||||||| | ||| |||||||| |  ||||||||||
Sbjct: 25050120 gcagcgagtagtctccggggaccaggaagtagatagaaaaaggatgtactacctcctgca 25050061



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 59/68 (86%), Gaps = 2/68 (2%)
 Strand = Plus / Minus

                                                                            
Query: 76       atgcttttacactgtacacaaacacaagtgtattacaaaggaagcctccgagtggctcaa 135
                |||||||||||||||||| |||||||| ||| |||| | |||||||| |  | |||||||
Sbjct: 25050410 atgcttttacactgtaca-aaacacaactgtgttac-agggaagccttcatgcggctcaa 25050353

                        
Query: 136      ataaatca 143
                ||||||||
Sbjct: 25050352 ataaatca 25050345



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 173      tacatgattttcacagctgcacatgtca 200
                |||||||| ||| |||||||||||||||
Sbjct: 25050327 tacatgatcttcgcagctgcacatgtca 25050300
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>dbj|AK066572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070O10, full
            insert sequence
          Length = 3811

 Score =  214 bits (108), Expect = 2e-52
 Identities = 162/180 (90%)
 Strand = Plus / Minus

                                                                        
Query: 247  ctgtaccaactacatggatatggaatggggatccacggcataggataggttcgtctggtg 306
            |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |
Sbjct: 3626 ctgtaccaactacatggatatggaatggagatccacggcatagtataggttcgtcgggcg 3567

                                                                        
Query: 307  actctgcctttgcccgagcacgaagaacatctgtggcgtcaattataacagaagaagact 366
            ||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||  |
Sbjct: 3566 actctgcctttgcccgagcacgaagaacatcggttgcgtcaattataacagaagcagctt 3507

                                                                        
Query: 367  gcagcgagtagtctccaggtactaggaagtatacagagaaaggatgcatcacctcctgca 426
            |||||||||||||||| || || |||||||| | ||| |||||||| |  ||||||||||
Sbjct: 3506 gcagcgagtagtctccggggaccaggaagtagatagaaaaaggatgtactacctcctgca 3447



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 59/68 (86%), Gaps = 2/68 (2%)
 Strand = Plus / Minus

                                                                        
Query: 76   atgcttttacactgtacacaaacacaagtgtattacaaaggaagcctccgagtggctcaa 135
            |||||||||||||||||| |||||||| ||| |||| | |||||||| |  | |||||||
Sbjct: 3796 atgcttttacactgtaca-aaacacaactgtgttac-agggaagccttcatgcggctcaa 3739

                    
Query: 136  ataaatca 143
            ||||||||
Sbjct: 3738 ataaatca 3731



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 173  tacatgattttcacagctgcacatgtca 200
            |||||||| ||| |||||||||||||||
Sbjct: 3713 tacatgatcttcgcagctgcacatgtca 3686
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>emb|AL357054.14| Human DNA sequence from clone RP11-532F6 on chromosome 6, complete
             sequence
          Length = 121656

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 288   aggataggttcgtctggtgactctgc 313
             ||||||||||| ||||||||||||||
Sbjct: 23040 aggataggttcctctggtgactctgc 23065
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>emb|CR450826.8| Zebrafish DNA sequence from clone CH211-145J10 in linkage group 12,
             complete sequence
          Length = 144762

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 2     tttgaaaatcctgaatcaaaa 22
             |||||||||||||||||||||
Sbjct: 93864 tttgaaaatcctgaatcaaaa 93884
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>emb|CR450768.14| Zebrafish DNA sequence from clone CH211-225H10 in linkage group 12,
             complete sequence
          Length = 150367

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 2     tttgaaaatcctgaatcaaaa 22
             |||||||||||||||||||||
Sbjct: 48968 tttgaaaatcctgaatcaaaa 48948
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>gb|AC116759.13| Mus musculus chromosome 18, clone RP23-383E12, complete sequence
          Length = 203049

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     acactgtacacaaacacaag 103
              ||||||||||||||||||||
Sbjct: 179785 acactgtacacaaacacaag 179766
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 113     aaggaagcctccgagtggctcaaa 136
               ||||||||| ||||||||||||||
Sbjct: 3655887 aaggaagccgccgagtggctcaaa 3655910
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>gb|AC115789.9| Mus musculus chromosome 18, clone RP23-398N2, complete sequence
          Length = 206108

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    acactgtacacaaacacaag 103
             ||||||||||||||||||||
Sbjct: 44809 acactgtacacaaacacaag 44790
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>gb|BC044148.1| Danio rerio thymidine kinase 1, soluble, mRNA (cDNA clone MGC:55362
            IMAGE:2601587), complete cds
          Length = 1637

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 84   acactgtacacaaacacaag 103
            ||||||||||||||||||||
Sbjct: 1297 acactgtacacaaacacaag 1316
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>ref|XM_864307.1| PREDICTED: Bos taurus similar to insulin-like 5 precursor
           (LOC613480), mRNA
          Length = 408

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 21  aaagcccttccgtgggcagc 40
           ||||||||||||||||||||
Sbjct: 310 aaagcccttccgtgggcagc 291
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>gb|AC122457.4| Mus musculus BAC clone RP24-266P11 from chromosome 12, complete
             sequence
          Length = 159954

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   tgattttcacagctgcacat 196
             ||||||||||||||||||||
Sbjct: 60239 tgattttcacagctgcacat 60220
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>gb|AY286123.1| Cyanidioschyzon merolae DBV201 chloroplast, complete genome
          Length = 149705

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 253    caactacatggatatggaat 272
              ||||||||||||||||||||
Sbjct: 128880 caactacatggatatggaat 128861
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>gb|AC153009.4| Mus musculus BAC clone RP23-408I18 from chromosome 9, complete sequence
          Length = 194871

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 79     cttttacactgtacacaaacacaa 102
              |||| |||||||||||||||||||
Sbjct: 179768 ctttgacactgtacacaaacacaa 179745
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>emb|AL159972.8| Human DNA sequence from clone RP11-157H4 on chromosome 13 Contains part
             of the KLF12 gene for Kruppel-like factor 12, complete
             sequence
          Length = 149512

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   aattataacagaagaagact 366
             ||||||||||||||||||||
Sbjct: 54707 aattataacagaagaagact 54688
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>emb|BX323870.13| Zebrafish DNA sequence from clone DKEYP-70G1 in linkage group 5,
             complete sequence
          Length = 187646

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     ctttgaaaatcctgaatcaa 20
             ||||||||||||||||||||
Sbjct: 97115 ctttgaaaatcctgaatcaa 97134
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>emb|CR293511.11| Zebrafish DNA sequence from clone DKEY-93H22 in linkage group 1, complete
              sequence
          Length = 178953

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     acactgtacacaaacacaag 103
              ||||||||||||||||||||
Sbjct: 123879 acactgtacacaaacacaag 123898
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>ref|XM_697039.1| PREDICTED: Danio rerio hypothetical protein LOC554882 (LOC554882),
            mRNA
          Length = 1620

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 84   acactgtacacaaacacaag 103
            ||||||||||||||||||||
Sbjct: 1298 acactgtacacaaacacaag 1317
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>ref|NM_199832.1| Danio rerio thymidine kinase 1, soluble (tk1), mRNA
          Length = 1637

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 84   acactgtacacaaacacaag 103
            ||||||||||||||||||||
Sbjct: 1297 acactgtacacaaacacaag 1316
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>emb|BX323563.10| Zebrafish DNA sequence from clone DKEY-20J10 in linkage group 5,
             complete sequence
          Length = 97393

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     ctttgaaaatcctgaatcaa 20
             ||||||||||||||||||||
Sbjct: 36604 ctttgaaaatcctgaatcaa 36585
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>gb|AF108903.1|AF108903 Neotoma magister microsatellite Nma09 sequence
          Length = 825

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 158 ggaataatgctcttgtacat 177
           ||||||||||||||||||||
Sbjct: 148 ggaataatgctcttgtacat 167
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>gb|AC020595.7| Homo sapiens BAC clone RP11-358M9 from 2, complete sequence
          Length = 189219

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 60    atattaatcttggcggatgctttt 83
             ||||||||| ||||||||||||||
Sbjct: 59398 atattaatcctggcggatgctttt 59375
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>emb|AL935114.8| Zebrafish DNA sequence from clone CH211-182P11, complete sequence
          Length = 152177

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    tacactgtacacaaacacaa 102
             ||||||||||||||||||||
Sbjct: 68131 tacactgtacacaaacacaa 68112
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>emb|AL672097.5| Zebrafish DNA sequence from clone BUSM1-37O5 in linkage group 9,
             complete sequence
          Length = 100381

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    ttttacactgtacacaaaca 99
             ||||||||||||||||||||
Sbjct: 68394 ttttacactgtacacaaaca 68375
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>dbj|AB002583.1| Cyanidioschyzon merolae chloroplast DNA, complete genome, strain:10D
          Length = 149987

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   caactacatggatatggaat 272
             ||||||||||||||||||||
Sbjct: 86471 caactacatggatatggaat 86490
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>gb|AC122426.5| Mus musculus BAC clone RP24-174I4 from 9, complete sequence
          Length = 153629

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 79    cttttacactgtacacaaacacaa 102
             |||| |||||||||||||||||||
Sbjct: 79655 ctttgacactgtacacaaacacaa 79632
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>gb|AC173483.1| Mus musculus BAC clone RP23-281C13 from chromosome 12, complete sequence
          Length = 182922

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    tgattttcacagctgcacat 196
              ||||||||||||||||||||
Sbjct: 145509 tgattttcacagctgcacat 145490
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>dbj|AP005020.1| Homo sapiens genomic DNA, chromosome 11q clone:RP11-486A21, complete
             sequences
          Length = 57000

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 79    cttttacactgtacacaaacacaa 102
             |||| |||||||||||||||||||
Sbjct: 46196 ctttgacactgtacacaaacacaa 46173


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,963,113
Number of Sequences: 3902068
Number of extensions: 3963113
Number of successful extensions: 72996
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72914
Number of HSP's gapped (non-prelim): 79
length of query: 428
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 406
effective length of database: 17,147,199,772
effective search space: 6961763107432
effective search space used: 6961763107432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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