Clone Name | rbastl04g01 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | gb|AC137065.26| Medicago truncatula clone mth2-29h7, complete se... | 42 | 0.66 | 2 | gb|AC154554.2| Mus musculus BAC clone RP23-416P6 from chromosome... | 40 | 2.6 | 3 | gb|AE014299.1| Shewanella oneidensis MR-1, complete genome | 40 | 2.6 | 4 | emb|AL671917.8| Mouse DNA sequence from clone RP23-217I18 on chr... | 40 | 2.6 |
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>gb|AC137065.26| Medicago truncatula clone mth2-29h7, complete sequence Length = 105004 Score = 42.1 bits (21), Expect = 0.66 Identities = 24/25 (96%) Strand = Plus / Plus Query: 53 aaatattagtcaacaatggtacaaa 77 |||||||||||||||||| |||||| Sbjct: 101295 aaatattagtcaacaatgttacaaa 101319
>gb|AC154554.2| Mus musculus BAC clone RP23-416P6 from chromosome 13, complete sequence Length = 204294 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 tacaaaatattagtcaacaa 68 |||||||||||||||||||| Sbjct: 131842 tacaaaatattagtcaacaa 131823
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 acaaaatattagtcaacaat 69 |||||||||||||||||||| Sbjct: 2555987 acaaaatattagtcaacaat 2555968
>emb|AL671917.8| Mouse DNA sequence from clone RP23-217I18 on chromosome 3, complete sequence Length = 172826 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 aaatattagtcaacaatggt 72 |||||||||||||||||||| Sbjct: 59691 aaatattagtcaacaatggt 59710 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,048,794 Number of Sequences: 3902068 Number of extensions: 2048794 Number of successful extensions: 134427 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 134388 Number of HSP's gapped (non-prelim): 39 length of query: 205 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 183 effective length of database: 17,147,199,772 effective search space: 3137937558276 effective search space used: 3137937558276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)