ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl04f12 |
|---|---|
| Clone Library Name | barley_pub |
>AROB_NITEU (Q82TB9) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 369 Score = 32.0 bits (71), Expect = 0.78 Identities = 13/33 (39%), Positives = 24/33 (72%) Frame = -1 Query: 392 WLKQIETSIA*QHWETVK*SETLPDGSKHKHWD 294 +L+++ +++A H ET + TLPDG ++KHW+ Sbjct: 56 YLEKLRSALAEHHVETF--AITLPDGERYKHWE 86
>ADA10_BOVIN (Q10741) ADAM 10 precursor (EC 3.4.24.81) (A disintegrin and| metalloproteinase domain 10) (Mammalian disintegrin-metalloprotease) (Myelin-associated metalloproteinase) (Kuzbanian protein homolog) Length = 748 Score = 31.2 bits (69), Expect = 1.3 Identities = 15/43 (34%), Positives = 19/43 (44%) Frame = +1 Query: 298 QCLCLLPSGKVSLYLTVSQCCHAMEVSICLSQDSLNWQKF*IG 426 +C C GK L C ME S C S S+ W K+ +G Sbjct: 579 ECTCASSDGKDDKELCHVCCMKKMEPSTCASTGSVQWNKYFLG 621
>YMU0_YEAST (Q04670) Transposon Ty1 protein B| Length = 1328 Score = 30.4 bits (67), Expect = 2.3 Identities = 20/71 (28%), Positives = 35/71 (49%) Frame = +3 Query: 90 NQKASGTMQISNLSCTI*LVALVVLTQLNVPPSYTLVDSSCIELLHFNVKQGFIYRKTDN 269 ++K S T QISN+ T + +LNVP + S+ E H + + F + + + Sbjct: 573 SKKRSSTPQISNIEST----GSGGMHKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYS 628 Query: 270 TTNTSHTQIPM 302 T+HT +P+ Sbjct: 629 ENETNHTNVPI 639
>YME4_YEAST (Q04711) Transposon Ty1 protein B| Length = 1328 Score = 30.4 bits (67), Expect = 2.3 Identities = 20/71 (28%), Positives = 35/71 (49%) Frame = +3 Query: 90 NQKASGTMQISNLSCTI*LVALVVLTQLNVPPSYTLVDSSCIELLHFNVKQGFIYRKTDN 269 ++K S T QISN+ T + +LNVP + S+ E H + + F + + + Sbjct: 573 SKKRSSTPQISNIEST----GSGGMHKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYS 628 Query: 270 TTNTSHTQIPM 302 T+HT +P+ Sbjct: 629 ENETNHTNVPI 639
>YMD9_YEAST (Q03434) Transposon Ty1 protein B| Length = 1328 Score = 30.4 bits (67), Expect = 2.3 Identities = 20/71 (28%), Positives = 35/71 (49%) Frame = +3 Query: 90 NQKASGTMQISNLSCTI*LVALVVLTQLNVPPSYTLVDSSCIELLHFNVKQGFIYRKTDN 269 ++K S T QISN+ T + +LNVP + S+ E H + + F + + + Sbjct: 573 SKKRSSTPQISNIEST----GSGGMHKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYS 628 Query: 270 TTNTSHTQIPM 302 T+HT +P+ Sbjct: 629 ENETNHTNVPI 639
>YJZ9_YEAST (P47100) Transposon Ty1 protein B| Length = 1755 Score = 30.4 bits (67), Expect = 2.3 Identities = 20/71 (28%), Positives = 35/71 (49%) Frame = +3 Query: 90 NQKASGTMQISNLSCTI*LVALVVLTQLNVPPSYTLVDSSCIELLHFNVKQGFIYRKTDN 269 ++K S T QISN+ T + +LNVP + S+ E H + + F + + + Sbjct: 1000 SKKRSSTPQISNIEST----GSGGMHKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYS 1055 Query: 270 TTNTSHTQIPM 302 T+HT +P+ Sbjct: 1056 ENETNHTNVPI 1066
>YJZ7_YEAST (P47098) Transposon Ty1 protein B| Length = 1755 Score = 30.4 bits (67), Expect = 2.3 Identities = 20/71 (28%), Positives = 35/71 (49%) Frame = +3 Query: 90 NQKASGTMQISNLSCTI*LVALVVLTQLNVPPSYTLVDSSCIELLHFNVKQGFIYRKTDN 269 ++K S T QISN+ T + +LNVP + S+ E H + + F + + + Sbjct: 1000 SKKRSSTPQISNIEST----GSGGMHKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYS 1055 Query: 270 TTNTSHTQIPM 302 T+HT +P+ Sbjct: 1056 ENETNHTNVPI 1066
>DMBT1_MOUSE (Q60997) Deleted in malignant brain tumors 1 protein precursor| (CRP-ductin) (Vomeroglandin) Length = 2085 Score = 30.4 bits (67), Expect = 2.3 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = +2 Query: 278 YISYSNPNAYVC-FHLARFHFI*QFPNVVMQWK 373 Y SYS+P+ V F + FHF+ +FP+V +Q K Sbjct: 1947 YQSYSSPSPRVSRFKFSSFHFLNRFPSVYLQCK 1979
>DMBT1_RAT (Q8CIZ5) Deleted in malignant brain tumors 1 protein precursor| (Ebnerin) (Pancrin) Length = 1418 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = +2 Query: 278 YISYSNPNAYVC-FHLARFHFI*QFPNVVMQWK 373 Y SYS+P+ + F + FHF+ +FP+V +Q K Sbjct: 1280 YQSYSSPSPRITRFKFSSFHFLNRFPSVYLQCK 1312
>DMBT1_PIG (Q4A3R3) Deleted in malignant brain tumors 1 protein precursor| Length = 1204 Score = 29.6 bits (65), Expect = 3.8 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Frame = +2 Query: 278 YISYSNPNAYVC-FHLARFHFI*QFPNVVMQWK 373 Y SYS P+ + F + FHF+ +FP+V +Q K Sbjct: 1066 YQSYSQPSPRIVRFKFSSFHFLSRFPSVYLQCK 1098
>RBS_BETVE (Q96542) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 182 Score = 29.3 bits (64), Expect = 5.0 Identities = 19/65 (29%), Positives = 28/65 (43%) Frame = +3 Query: 195 LVDSSCIELLHFNVKQGFIYRKTDNTTNTSHTQIPMLMFASIWQGFTLFDSFPMLSCNGS 374 L+ + I L F ++ GF+YR+ H + P W + L PM CN S Sbjct: 92 LLRKNLIPCLEFELEHGFVYRE--------HNRSPGYYDGRYWTMWKL----PMFGCNDS 139 Query: 375 FNLLK 389 +LK Sbjct: 140 SQVLK 144
>ADCY2_HUMAN (Q08462) Adenylate cyclase type 2 (EC 4.6.1.1) (Adenylate cyclase| type II) (ATP pyrophosphate-lyase 2) (Adenylyl cyclase 2) Length = 1091 Score = 28.9 bits (63), Expect = 6.6 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Frame = +1 Query: 241 RDSSIEKQITQQIHLILKSQCLCLLPSGKVSLYLT-VSQCCH 363 RD+ I +T H I+ S CL P GK L L QC H Sbjct: 156 RDAIIASVLTSSSHTIVLSVCLSATPGGKEHLGLADPGQCDH 197
>RSC1_YEAST (P53236) Chromatin structure remodeling complex protein RSC1| (Remodel the structure of chromatin complex subunit 1) Length = 928 Score = 28.5 bits (62), Expect = 8.6 Identities = 17/47 (36%), Positives = 21/47 (44%) Frame = +3 Query: 147 VALVVLTQLNVPPSYTLVDSSCIELLHFNVKQGFIYRKTDNTTNTSH 287 + L L Q PS SS LLH N Q + K +N N+SH Sbjct: 611 IRLPTLKQTKSIPSSNFRSSSNTPLLHQNFNQTSNFLKLENMNNSSH 657
>YBE7_YEAST (P34216) Protein YBL047C| Length = 1381 Score = 28.5 bits (62), Expect = 8.6 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%) Frame = +3 Query: 150 ALVVLTQL----NVPPSYTLVDSSCIELLHFNVKQGFIYRKTDNTT-NTSHTQIPMLMFA 314 AL ++ QL N P S L +S+ +L F++ Q ++ + T NT++T IP L Sbjct: 75 ALRMIAQLQNAPNQPISAALYESTPTQLASFSINQNPAPMQSGSATGNTNNTDIPALSSN 134 Query: 315 SIWQGFTLFD 344 I + LFD Sbjct: 135 DIAKFSQLFD 144 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,838,302 Number of Sequences: 219361 Number of extensions: 1162615 Number of successful extensions: 2265 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2226 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2265 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
