>ref|XM_479008.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3330

 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                        
Query: 260  gcgatgtcgagcaacgcggcgagcacgtccggcatgtccggccgctcgtgaggcgcgtcg 319
            ||||||||||| || |||||||||||||||||||||||||||||||| || |||| ||||
Sbjct: 3296 gcgatgtcgagtaaggcggcgagcacgtccggcatgtccggccgctcctgcggcgagtcg 3237

                             
Query: 320  gccgtgcaccgcatgcc 336
            || ||||||||||||||
Sbjct: 3236 gcggtgcaccgcatgcc 3220

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Plus

                                                                            
Query: 260      gcgatgtcgagcaacgcggcgagcacgtccggcatgtccggccgctcgtgaggcgcgtcg 319
                ||||||||||| || |||||||||||||||||||||||||||||||| || |||| ||||
Sbjct: 24294677 gcgatgtcgagtaaggcggcgagcacgtccggcatgtccggccgctcctgcggcgagtcg 24294736

                                 
Query: 320      gccgtgcaccgcatgcc 336
                || ||||||||||||||
Sbjct: 24294737 gcggtgcaccgcatgcc 24294753

>dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1579_C03
          Length = 122851

 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Plus

                                                                         
Query: 260   gcgatgtcgagcaacgcggcgagcacgtccggcatgtccggccgctcgtgaggcgcgtcg 319
             ||||||||||| || |||||||||||||||||||||||||||||||| || |||| ||||
Sbjct: 27870 gcgatgtcgagtaaggcggcgagcacgtccggcatgtccggccgctcctgcggcgagtcg 27929

                              
Query: 320   gccgtgcaccgcatgcc 336
             || ||||||||||||||
Sbjct: 27930 gcggtgcaccgcatgcc 27946

>dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0453E05
          Length = 137364

 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Plus

                                                                          
Query: 260    gcgatgtcgagcaacgcggcgagcacgtccggcatgtccggccgctcgtgaggcgcgtcg 319
              ||||||||||| || |||||||||||||||||||||||||||||||| || |||| ||||
Sbjct: 106228 gcgatgtcgagtaaggcggcgagcacgtccggcatgtccggccgctcctgcggcgagtcg 106287

                               
Query: 320    gccgtgcaccgcatgcc 336
              || ||||||||||||||
Sbjct: 106288 gcggtgcaccgcatgcc 106304

>dbj|AK120815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014N07, full
            insert sequence
          Length = 3856

 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                        
Query: 260  gcgatgtcgagcaacgcggcgagcacgtccggcatgtccggccgctcgtgaggcgcgtcg 319
            ||||||||||| || |||||||||||||||||||||||||||||||| || |||| ||||
Sbjct: 3498 gcgatgtcgagtaaggcggcgagcacgtccggcatgtccggccgctcctgcggcgagtcg 3439

                             
Query: 320  gccgtgcaccgcatgcc 336
            || ||||||||||||||
Sbjct: 3438 gcggtgcaccgcatgcc 3422

>dbj|AK119897.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-C07, full
            insert sequence
          Length = 3732

 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                        
Query: 260  gcgatgtcgagcaacgcggcgagcacgtccggcatgtccggccgctcgtgaggcgcgtcg 319
            ||||||||||| || |||||||||||||||||||||||||||||||| || |||| ||||
Sbjct: 3456 gcgatgtcgagtaaggcggcgagcacgtccggcatgtccggccgctcctgcggcgagtcg 3397

                             
Query: 320  gccgtgcaccgcatgcc 336
            || ||||||||||||||
Sbjct: 3396 gcggtgcaccgcatgcc 3380

>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 261     cgatgtcgagcaacgcggcgagcacgtcc 289
               |||||||||||| ||||||| ||||||||
Sbjct: 3949443 cgatgtcgagcagcgcggcgtgcacgtcc 3949415

>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16
          Length = 347786

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 331    catgcccagcgccagcagctc 351
              |||||||||||||||||||||
Sbjct: 102227 catgcccagcgccagcagctc 102247

>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14
          Length = 349146

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 331    catgcccagcgccagcagctc 351
              |||||||||||||||||||||
Sbjct: 106144 catgcccagcgccagcagctc 106164

>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12
          Length = 346359

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 331    catgcccagcgccagcagctc 351
              |||||||||||||||||||||
Sbjct: 300397 catgcccagcgccagcagctc 300417

>gb|AC139574.4| Mus musculus BAC clone RP23-477I8 from chromosome 15, complete sequence
          Length = 190948

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    tgtctcctgtaaccttgaat 168
              ||||||||||||||||||||
Sbjct: 180940 tgtctcctgtaaccttgaat 180921

>ref|XM_519609.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ23749
           (LOC464000), mRNA
          Length = 2364

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 334 gcccagcgccagcagctccc 353
           ||||||||||||||||||||
Sbjct: 246 gcccagcgccagcagctccc 227

>gb|AC102417.11| Mus musculus chromosome 3, clone RP24-499J8, complete sequence
          Length = 161101

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   tcctgtaatgaattttgtct 153
             ||||||||||||||||||||
Sbjct: 58070 tcctgtaatgaattttgtct 58089

>gb|AC121148.8| Mus musculus chromosome 3, clone RP24-369K4, complete sequence
          Length = 209365

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   tcctgtaatgaattttgtct 153
             ||||||||||||||||||||
Sbjct: 12340 tcctgtaatgaattttgtct 12359

>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 330     gcatgcccagcgccagcagc 349
               ||||||||||||||||||||
Sbjct: 1534345 gcatgcccagcgccagcagc 1534364

>gb|DQ180962.1| Erwinia pyrifoliae hrp gene cluster, partial sequence; and unknown
             genes
          Length = 28886

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 330   gcatgcccagcgccagcagc 349
             ||||||||||||||||||||
Sbjct: 17901 gcatgcccagcgccagcagc 17882

>gb|AC123699.10| Mus musculus chromosome 5, clone RP23-333M22, complete sequence
          Length = 167971

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 117   aaggaatgaattttgtttcctgta 140
             |||||||||||||| |||||||||
Sbjct: 33921 aaggaatgaattttctttcctgta 33898

>emb|AL357274.9| Human DNA sequence from clone RP11-685P13 on chromosome 6, complete
             sequence
          Length = 133565

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   ctatctcacagaacttgttt 194
             ||||||||||||||||||||
Sbjct: 38451 ctatctcacagaacttgttt 38432

>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 264    tgtcgagcaacgcggcgagc 283
              ||||||||||||||||||||
Sbjct: 709327 tgtcgagcaacgcggcgagc 709308

>gb|AC090133.6| Homo sapiens chromosome 8, clone RP11-813L8, complete sequence
          Length = 201279

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 334    gcccagcgccagcagctccc 353
              ||||||||||||||||||||
Sbjct: 162570 gcccagcgccagcagctccc 162551

>gb|AC123777.4| Homo sapiens chromosome 8, clone RP11-252C15, complete sequence
          Length = 175943

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 334    gcccagcgccagcagctccc 353
              ||||||||||||||||||||
Sbjct: 105778 gcccagcgccagcagctccc 105759

>gb|AC011488.7| Homo sapiens chromosome 19 clone CTB-171N13, complete sequence
          Length = 134308

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 345    gcagctcccaggacaccgtg 364
              ||||||||||||||||||||
Sbjct: 107851 gcagctcccaggacaccgtg 107870

>emb|AJ605532.1| Pseudomonas fluorescens bv. V hrcR gene (partial), hrcS gene and
           hrcT gene (partial), strain CFBP 11386
          Length = 892

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 330 gcatgcccagcgccagcagc 349
           ||||||||||||||||||||
Sbjct: 55  gcatgcccagcgccagcagc 36

>emb|AJ605523.1| Pseudomonas fluorescens bv. V hrcR gene (partial), hrcS gene and
           hrcT gene (partial), strain CFBP 11350
          Length = 892

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 330 gcatgcccagcgccagcagc 349
           ||||||||||||||||||||
Sbjct: 55  gcatgcccagcgccagcagc 36

>emb|AJ605521.1| Pseudomonas fluorescens bv. I hrcR gene (partial), hrcS gene and
           hrcT gene (partial), strain CFBP 11347
          Length = 881

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 330 gcatgcccagcgccagcagc 349
           ||||||||||||||||||||
Sbjct: 44  gcatgcccagcgccagcagc 25

>emb|AJ605520.1| Pseudomonas fluorescens bv. I hrcR gene (partial), hrcS gene and
           hrcT gene (partial), strain CFBP 11345
          Length = 891

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 330 gcatgcccagcgccagcagc 349
           ||||||||||||||||||||
Sbjct: 55  gcatgcccagcgccagcagc 36

>gb|L25828.3|ERWHRPI Erwinia amylovora HrpJ (hrpJ), HrcV (hrcV), HrpQ (hrpQ), HrcN (hrcN),
            HrpO (hrpO), HrpP (hrpP), HrcQ (hrcQ), HrcR (hrcR), HrcS
            (hrcS), HrcT (hrcT), and HrcU (hrcU) genes, complete cds;
            and unknown genes
          Length = 11564

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 330  gcatgcccagcgccagcagc 349
            ||||||||||||||||||||
Sbjct: 8192 gcatgcccagcgccagcagc 8173

>gb|AC093002.4| Homo sapiens 3q BAC RP11-490H13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 70707

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   aatgaattttgtttcctgta 140
             ||||||||||||||||||||
Sbjct: 56002 aatgaattttgtttcctgta 55983

>gb|AF292566.1|AF292566 Pseudomonas fluorescens RspL (rspL), RspO (rspO), RspP (rspP), RscQA
            (rscQA), RscQB (rscQB), RscR (rscR), RscS (rscS), RscT
            (rscT), RscU (rscU), RspV (rspV), RspT (rspT), RscC
            (rscC), RspG (rspG), RspF (rspF), RspE (rspE), RspD
            (rspD), RscJ (rscJ), RspB (rspB), RspA (rspA), RspR
            (rspR), and putative GTP-binding protein genes, complete
            cds; and unknown gene
          Length = 16371

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 330  gcatgcccagcgccagcagc 349
            ||||||||||||||||||||
Sbjct: 4148 gcatgcccagcgccagcagc 4129

>gb|AF232004.3| Pseudomonas syringae pv. tomato strain DC3000 Hrp pathogenicity island,
             complete sequence
          Length = 52498

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 330   gcatgcccagcgccagcagc 349
             ||||||||||||||||||||
Sbjct: 19610 gcatgcccagcgccagcagc 19591

>ref|NM_152271.3| Homo sapiens LON peptidase N-terminal domain and ring finger 1
           (LONRF1), mRNA
          Length = 3584

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 334 gcccagcgccagcagctccc 353
           ||||||||||||||||||||
Sbjct: 246 gcccagcgccagcagctccc 227

>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 261     cgatgtcgagcaacgcggcgagca 284
               |||||||||||| |||||||||||
Sbjct: 2139629 cgatgtcgagcagcgcggcgagca 2139606

>gb|DQ246442.1| Pseudomonas syringae pv. tagetis strain LMG5090 hrp/hrc gene cluster,
             complete sequence
          Length = 23154

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 330   gcatgcccagcgccagcagc 349
             ||||||||||||||||||||
Sbjct: 11434 gcatgcccagcgccagcagc 11415

>dbj|AK129388.1| Mus musculus mRNA for mKIAA1545 protein
          Length = 4592

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 117  aaggaatgaattttgtttcctgta 140
            |||||||||||||| |||||||||
Sbjct: 1463 aaggaatgaattttctttcctgta 1440

>gb|AC110537.19| Mus musculus chromosome 5, clone RP23-44A4, complete sequence
          Length = 208136

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    tgtctcctgtaaccttgaat 168
              ||||||||||||||||||||
Sbjct: 133676 tgtctcctgtaaccttgaat 133657

>gb|AC169384.2| Mus musculus chromosome 5, clone RP23-231C16, complete sequence
          Length = 204569

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 117    aaggaatgaattttgtttcctgta 140
              |||||||||||||| |||||||||
Sbjct: 167545 aaggaatgaattttctttcctgta 167522


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,172,948
Number of Sequences: 3902068
Number of extensions: 3172948
Number of successful extensions: 62545
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62187
Number of HSP's gapped (non-prelim): 358
length of query: 413
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 391
effective length of database: 17,147,199,772
effective search space: 6704555110852
effective search space used: 6704555110852
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)