Clone Name | rbastl04f10 |
---|---|
Clone Library Name | barley_pub |
>SYR_WIGBR (Q8D372) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 576 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = +1 Query: 70 KLVPPCVLWLYLSTYSTALHSFYNKCCPSKKKNERPKNTYMILQL 204 KL P +L YL S FY C K K E KN+ + L + Sbjct: 511 KLGTPHILCNYLYDLSKTFSVFYENCSIIKTKEESVKNSRLFLSI 555
>AT11B_RABIT (Q9N0Z4) Probable phospholipid-transporting ATPase IF (EC 3.6.3.1)| (ATPase class I type 11B) (ATPase IR) (RING-finger-binding protein) (Fragment) Length = 1169 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/45 (28%), Positives = 19/45 (42%) Frame = -1 Query: 220 RQMHCAAVESCMCFSAFHSFFCLDNICCKMNVMLYCKSIGRATAR 86 RQ+H + E S C+D++CC C S+ R R Sbjct: 1087 RQLHPTSTEKAQLTETNSSIKCVDSLCCFPEGETTCTSVRRMLER 1131
>AT11B_HUMAN (Q9Y2G3) Probable phospholipid-transporting ATPase IF (EC 3.6.3.1)| (ATPase class I type 11B) (ATPase IR) Length = 1177 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/45 (28%), Positives = 18/45 (40%) Frame = -1 Query: 220 RQMHCAAVESCMCFSAFHSFFCLDNICCKMNVMLYCKSIGRATAR 86 R +H + E CLD++CC C S+GR R Sbjct: 1095 RHLHPTSTEKAQLTETNAGIKCLDSMCCFPEGEAACASVGRMLER 1139
>SYR_BUCBP (P59483) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 578 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/44 (31%), Positives = 20/44 (45%) Frame = +1 Query: 82 PCVLWLYLSTYSTALHSFYNKCCPSKKKNERPKNTYMILQLHNA 213 P ++ YL S FY KC K KN + + ++L L A Sbjct: 517 PHIICKYLYELSKIFSKFYEKCSIYKSKNTKIRKNRLLLSLLTA 560
>DYHC_CAEEL (Q19020) Dynein heavy chain, cytosolic (DYHC)| Length = 4568 Score = 27.7 bits (60), Expect = 7.3 Identities = 16/60 (26%), Positives = 27/60 (45%) Frame = +1 Query: 118 TALHSFYNKCCPSKKKNERPKNTYMILQLHNAFAFFSINKNHVLIPKAEIQSSVIRNGLS 297 T L + ++C K + + + L N F S ++HVLIPK + S+ +S Sbjct: 4189 TTLRTLLSQCIYGGKIDNQFDQVLLDCVLENLFTAKSFEQDHVLIPKYDGDDSLFTPNMS 4248
>CBP1_CAEEL (P34545) Protein cbp-1| Length = 2056 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = +1 Query: 133 FYNKCCPSKKKNERPKNTYMILQL-HNAFAFFSINKNHVLIPK 258 F +CC + KK ++P N Y+ +L HN + F ++ + I K Sbjct: 1095 FICECCRTAKKYQKPDNKYLASKLPHNKLSTFLEDRVNGFIKK 1137
>MTR1A_CHICK (P49285) Melatonin receptor type 1A (MEL-1A-R) (CKA)| Length = 353 Score = 27.7 bits (60), Expect = 7.3 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 5/64 (7%) Frame = +1 Query: 64 PEKLVPPCVLWLYLSTYSTALHSFYNKCCPS-----KKKNERPKNTYMILQLHNAFAFFS 228 PE ++P WL++S+Y A ++N C + +N R + +++ A AFF Sbjct: 268 PETIIPRIPEWLFVSSYYMA---YFNSCLNAIIYGLLNQNFRREYKKIVVSFCTAKAFFQ 324 Query: 229 INKN 240 + N Sbjct: 325 DSSN 328
>VATA_ARATH (O23654) Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)| (V-ATPase subunit A) (Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa subunit) Length = 623 Score = 27.3 bits (59), Expect = 9.5 Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Frame = +1 Query: 82 PCVLWLY-LSTYSTALHSFYNKCCP 153 P V WL S YSTAL SFY K P Sbjct: 449 PSVNWLISYSKYSTALESFYEKFDP 473
>SGK2_MOUSE (Q9QZS5) Serine/threonine-protein kinase Sgk2 (EC 2.7.11.1)| (Serum/glucocorticoid-regulated kinase 2) Length = 367 Score = 27.3 bits (59), Expect = 9.5 Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 9/107 (8%) Frame = +2 Query: 59 VFLKNWYHPACCGSTYRLTVQHYIHFTTNVVQA-------KKRMKGRKTHT*FYSCTM-- 211 V LKN HP G Y ++F + V ++ + + FY+ + Sbjct: 86 VLLKNVRHPFLVGLRYSFQTPEKLYFVLDYVNGGELFFHLQRERRFLEPRARFYTAEVAS 145 Query: 212 HLPFLASTKIMCLYLKPKFSLV*YVTVCLECMSHYMLASISLGRHVV 352 + +L S I+ LKP+ + L+C H +L L + V Sbjct: 146 AIGYLHSLNIIYRDLKPE-------NILLDCQGHVVLTDFGLCKECV 185 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,792,628 Number of Sequences: 219361 Number of extensions: 906067 Number of successful extensions: 2116 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 2084 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2116 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)