ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYR_WIGBR (Q8D372) Arginyl-tRNA synthetase (EC 6.1.1.19) (Argini... 29 3.3
2AT11B_RABIT (Q9N0Z4) Probable phospholipid-transporting ATPase I... 28 5.6
3AT11B_HUMAN (Q9Y2G3) Probable phospholipid-transporting ATPase I... 28 5.6
4SYR_BUCBP (P59483) Arginyl-tRNA synthetase (EC 6.1.1.19) (Argini... 28 5.6
5DYHC_CAEEL (Q19020) Dynein heavy chain, cytosolic (DYHC) 28 7.3
6CBP1_CAEEL (P34545) Protein cbp-1 28 7.3
7MTR1A_CHICK (P49285) Melatonin receptor type 1A (MEL-1A-R) (CKA) 28 7.3
8VATA_ARATH (O23654) Vacuolar ATP synthase catalytic subunit A (E... 27 9.5
9SGK2_MOUSE (Q9QZS5) Serine/threonine-protein kinase Sgk2 (EC 2.7... 27 9.5

>SYR_WIGBR (Q8D372) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 576

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +1

Query: 70  KLVPPCVLWLYLSTYSTALHSFYNKCCPSKKKNERPKNTYMILQL 204
           KL  P +L  YL   S     FY  C   K K E  KN+ + L +
Sbjct: 511 KLGTPHILCNYLYDLSKTFSVFYENCSIIKTKEESVKNSRLFLSI 555



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>AT11B_RABIT (Q9N0Z4) Probable phospholipid-transporting ATPase IF (EC 3.6.3.1)|
            (ATPase class I type 11B) (ATPase IR)
            (RING-finger-binding protein) (Fragment)
          Length = 1169

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -1

Query: 220  RQMHCAAVESCMCFSAFHSFFCLDNICCKMNVMLYCKSIGRATAR 86
            RQ+H  + E         S  C+D++CC       C S+ R   R
Sbjct: 1087 RQLHPTSTEKAQLTETNSSIKCVDSLCCFPEGETTCTSVRRMLER 1131



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>AT11B_HUMAN (Q9Y2G3) Probable phospholipid-transporting ATPase IF (EC 3.6.3.1)|
            (ATPase class I type 11B) (ATPase IR)
          Length = 1177

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -1

Query: 220  RQMHCAAVESCMCFSAFHSFFCLDNICCKMNVMLYCKSIGRATAR 86
            R +H  + E            CLD++CC       C S+GR   R
Sbjct: 1095 RHLHPTSTEKAQLTETNAGIKCLDSMCCFPEGEAACASVGRMLER 1139



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>SYR_BUCBP (P59483) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 578

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 82  PCVLWLYLSTYSTALHSFYNKCCPSKKKNERPKNTYMILQLHNA 213
           P ++  YL   S     FY KC   K KN + +   ++L L  A
Sbjct: 517 PHIICKYLYELSKIFSKFYEKCSIYKSKNTKIRKNRLLLSLLTA 560



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>DYHC_CAEEL (Q19020) Dynein heavy chain, cytosolic (DYHC)|
          Length = 4568

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +1

Query: 118  TALHSFYNKCCPSKKKNERPKNTYMILQLHNAFAFFSINKNHVLIPKAEIQSSVIRNGLS 297
            T L +  ++C    K + +     +   L N F   S  ++HVLIPK +   S+    +S
Sbjct: 4189 TTLRTLLSQCIYGGKIDNQFDQVLLDCVLENLFTAKSFEQDHVLIPKYDGDDSLFTPNMS 4248



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>CBP1_CAEEL (P34545) Protein cbp-1|
          Length = 2056

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 133  FYNKCCPSKKKNERPKNTYMILQL-HNAFAFFSINKNHVLIPK 258
            F  +CC + KK ++P N Y+  +L HN  + F  ++ +  I K
Sbjct: 1095 FICECCRTAKKYQKPDNKYLASKLPHNKLSTFLEDRVNGFIKK 1137



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>MTR1A_CHICK (P49285) Melatonin receptor type 1A (MEL-1A-R) (CKA)|
          Length = 353

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +1

Query: 64  PEKLVPPCVLWLYLSTYSTALHSFYNKCCPS-----KKKNERPKNTYMILQLHNAFAFFS 228
           PE ++P    WL++S+Y  A   ++N C  +       +N R +   +++    A AFF 
Sbjct: 268 PETIIPRIPEWLFVSSYYMA---YFNSCLNAIIYGLLNQNFRREYKKIVVSFCTAKAFFQ 324

Query: 229 INKN 240
            + N
Sbjct: 325 DSSN 328



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>VATA_ARATH (O23654) Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)|
           (V-ATPase subunit A) (Vacuolar proton pump alpha
           subunit) (V-ATPase 69 kDa subunit)
          Length = 623

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 82  PCVLWLY-LSTYSTALHSFYNKCCP 153
           P V WL   S YSTAL SFY K  P
Sbjct: 449 PSVNWLISYSKYSTALESFYEKFDP 473



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>SGK2_MOUSE (Q9QZS5) Serine/threonine-protein kinase Sgk2 (EC 2.7.11.1)|
           (Serum/glucocorticoid-regulated kinase 2)
          Length = 367

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 9/107 (8%)
 Frame = +2

Query: 59  VFLKNWYHPACCGSTYRLTVQHYIHFTTNVVQA-------KKRMKGRKTHT*FYSCTM-- 211
           V LKN  HP   G  Y       ++F  + V         ++  +  +    FY+  +  
Sbjct: 86  VLLKNVRHPFLVGLRYSFQTPEKLYFVLDYVNGGELFFHLQRERRFLEPRARFYTAEVAS 145

Query: 212 HLPFLASTKIMCLYLKPKFSLV*YVTVCLECMSHYMLASISLGRHVV 352
            + +L S  I+   LKP+        + L+C  H +L    L +  V
Sbjct: 146 AIGYLHSLNIIYRDLKPE-------NILLDCQGHVVLTDFGLCKECV 185


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,792,628
Number of Sequences: 219361
Number of extensions: 906067
Number of successful extensions: 2116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2116
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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