Clone Name | rbastl04f08 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 161 bits (81), Expect = 2e-36 Identities = 186/221 (84%) Strand = Plus / Minus Query: 150 tttcacctcccctcggctttgatcagctgaaagaaaaccctgctcatcgacacgtcggag 209 |||||||| ||||| |||||||| |||||| |||| ||||||||||| || ||||||||| Sbjct: 13143743 tttcaccttccctcagctttgattagctgagagaacaccctgctcatggaaacgtcggag 13143684 Query: 210 aggtcgtggtcaggctcgtgcgaagctccgtcctccgccatcgtcacgctgatgctctcc 269 ||||| || |||||||| || |||||||| | |||||||| ||||||||||||||||| Sbjct: 13143683 aggtcatgatcaggctcatgtgaagctccagcttccgccattgtcacgctgatgctctcg 13143624 Query: 270 atggcaccgacgtgctgaacctgcgacgacaggtcgacgatccggttcatgctgttcacg 329 | ||| |||| || ||| || ||||||| || ||||| |||| |||||||||||| || Sbjct: 13143623 agggcgccgatgttctggacttgcgacgggagttcgacaatcctgttcatgctgtttaca 13143564 Query: 330 tccgacacggtcgaagaatccgcgtcctggagctgcaggac 370 || || || ||||| ||||| || ||||||||||||||||| Sbjct: 13143563 tctgatactgtcgatgaatctgcatcctggagctgcaggac 13143523
>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0012F14 Length = 168629 Score = 161 bits (81), Expect = 2e-36 Identities = 186/221 (84%) Strand = Plus / Minus Query: 150 tttcacctcccctcggctttgatcagctgaaagaaaaccctgctcatcgacacgtcggag 209 |||||||| ||||| |||||||| |||||| |||| ||||||||||| || ||||||||| Sbjct: 60931 tttcaccttccctcagctttgattagctgagagaacaccctgctcatggaaacgtcggag 60872 Query: 210 aggtcgtggtcaggctcgtgcgaagctccgtcctccgccatcgtcacgctgatgctctcc 269 ||||| || |||||||| || |||||||| | |||||||| ||||||||||||||||| Sbjct: 60871 aggtcatgatcaggctcatgtgaagctccagcttccgccattgtcacgctgatgctctcg 60812 Query: 270 atggcaccgacgtgctgaacctgcgacgacaggtcgacgatccggttcatgctgttcacg 329 | ||| |||| || ||| || ||||||| || ||||| |||| |||||||||||| || Sbjct: 60811 agggcgccgatgttctggacttgcgacgggagttcgacaatcctgttcatgctgtttaca 60752 Query: 330 tccgacacggtcgaagaatccgcgtcctggagctgcaggac 370 || || || ||||| ||||| || ||||||||||||||||| Sbjct: 60751 tctgatactgtcgatgaatctgcatcctggagctgcaggac 60711
>dbj|AK065468.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013020G14, full insert sequence Length = 3151 Score = 161 bits (81), Expect = 2e-36 Identities = 186/221 (84%) Strand = Plus / Minus Query: 150 tttcacctcccctcggctttgatcagctgaaagaaaaccctgctcatcgacacgtcggag 209 |||||||| ||||| |||||||| |||||| |||| ||||||||||| || ||||||||| Sbjct: 2861 tttcaccttccctcagctttgattagctgagagaacaccctgctcatggaaacgtcggag 2802 Query: 210 aggtcgtggtcaggctcgtgcgaagctccgtcctccgccatcgtcacgctgatgctctcc 269 ||||| || |||||||| || |||||||| | |||||||| ||||||||||||||||| Sbjct: 2801 aggtcatgatcaggctcatgtgaagctccagcttccgccattgtcacgctgatgctctcg 2742 Query: 270 atggcaccgacgtgctgaacctgcgacgacaggtcgacgatccggttcatgctgttcacg 329 | ||| |||| || ||| || ||||||| || ||||| |||| |||||||||||| || Sbjct: 2741 agggcgccgatgttctggacttgcgacgggagttcgacaatcctgttcatgctgtttaca 2682 Query: 330 tccgacacggtcgaagaatccgcgtcctggagctgcaggac 370 || || || ||||| ||||| || ||||||||||||||||| Sbjct: 2681 tctgatactgtcgatgaatctgcatcctggagctgcaggac 2641
>dbj|AK061669.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-F10, full insert sequence Length = 1037 Score = 153 bits (77), Expect = 5e-34 Identities = 185/221 (83%) Strand = Plus / Minus Query: 150 tttcacctcccctcggctttgatcagctgaaagaaaaccctgctcatcgacacgtcggag 209 |||||||| ||||| |||||||| |||||| |||| ||||||||||| || ||||||||| Sbjct: 744 tttcaccttccctcagctttgattagctgagagaacaccctgctcatggaaacgtcggag 685 Query: 210 aggtcgtggtcaggctcgtgcgaagctccgtcctccgccatcgtcacgctgatgctctcc 269 ||||| || |||||||| || |||||||| | |||||||| ||||||||||||||||| Sbjct: 684 aggtcatgatcaggctcatgtgaagctccagcttccgccattgtcacgctgatgctctcg 625 Query: 270 atggcaccgacgtgctgaacctgcgacgacaggtcgacgatccggttcatgctgttcacg 329 | ||| |||| || ||| || |||||| || ||||| |||| |||||||||||| || Sbjct: 624 agggcgccgatgttctggactggcgacgggagttcgacaatcctgttcatgctgtttaca 565 Query: 330 tccgacacggtcgaagaatccgcgtcctggagctgcaggac 370 || || || ||||| ||||| || ||||||||||||||||| Sbjct: 564 tctgatactgtcgatgaatctgcatcctggagctgcaggac 524
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 gaaatcgaaaccgtagttcag 21 ||||||||||||||||||||| Sbjct: 190487 gaaatcgaaaccgtagttcag 190467
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 aagaatccgcgtcctggagc 362 |||||||||||||||||||| Sbjct: 1308329 aagaatccgcgtcctggagc 1308310
>gb|AC113339.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBb0047B19, from chromosome 10, complete sequence Length = 137015 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 agttcagtacacaattacaaggga 38 |||| ||||||||||||||||||| Sbjct: 129548 agttaagtacacaattacaaggga 129525
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 tgctgttcacgtccgacacg 338 |||||||||||||||||||| Sbjct: 1951396 tgctgttcacgtccgacacg 1951377
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 agttcagtacacaattacaaggga 38 |||| ||||||||||||||||||| Sbjct: 7686554 agttaagtacacaattacaaggga 7686531
>ref|XM_395113.2| PREDICTED: Apis mellifera similar to CG18076-PH, isoform H (LOC411644), mRNA Length = 8718 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 aatccgcgtcctggagctgc 365 |||||||||||||||||||| Sbjct: 1801 aatccgcgtcctggagctgc 1782
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 cttgctcacacccctaacgg 125 |||||||||||||||||||| Sbjct: 1164835 cttgctcacacccctaacgg 1164854
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 tgctgttcacgtccgacacggtcg 342 |||||||||||||||||| ||||| Sbjct: 3158222 tgctgttcacgtccgacaaggtcg 3158199 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 cgccatcgtcacgctgatgc 264 |||||||||||||||||||| Sbjct: 2463966 cgccatcgtcacgctgatgc 2463947
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 agttcagtacacaattacaaggga 38 |||| ||||||||||||||||||| Sbjct: 7690753 agttaagtacacaattacaaggga 7690730 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,231,891 Number of Sequences: 3902068 Number of extensions: 2231891 Number of successful extensions: 40880 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40681 Number of HSP's gapped (non-prelim): 199 length of query: 374 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 352 effective length of database: 17,147,199,772 effective search space: 6035814319744 effective search space used: 6035814319744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)