ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 161 2e-36
2dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic D... 161 2e-36
3dbj|AK065468.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 2e-36
4dbj|AK061669.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 5e-34
5gb|CP000133.1| Rhizobium etli CFN 42, complete genome 42 1.3
6gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 5.0
7gb|AC113339.1| Genomic sequence for Oryza sativa (japonica culti... 40 5.0
8gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 5.0
9dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
10ref|XM_395113.2| PREDICTED: Apis mellifera similar to CG18076-PH... 40 5.0
11dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 40 5.0
12emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 5.0
13gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  161 bits (81), Expect = 2e-36
 Identities = 186/221 (84%)
 Strand = Plus / Minus

                                                                            
Query: 150      tttcacctcccctcggctttgatcagctgaaagaaaaccctgctcatcgacacgtcggag 209
                |||||||| ||||| |||||||| |||||| |||| ||||||||||| || |||||||||
Sbjct: 13143743 tttcaccttccctcagctttgattagctgagagaacaccctgctcatggaaacgtcggag 13143684

                                                                            
Query: 210      aggtcgtggtcaggctcgtgcgaagctccgtcctccgccatcgtcacgctgatgctctcc 269
                ||||| || |||||||| || ||||||||  | |||||||| ||||||||||||||||| 
Sbjct: 13143683 aggtcatgatcaggctcatgtgaagctccagcttccgccattgtcacgctgatgctctcg 13143624

                                                                            
Query: 270      atggcaccgacgtgctgaacctgcgacgacaggtcgacgatccggttcatgctgttcacg 329
                | ||| |||| || ||| || |||||||  || ||||| |||| |||||||||||| || 
Sbjct: 13143623 agggcgccgatgttctggacttgcgacgggagttcgacaatcctgttcatgctgtttaca 13143564

                                                         
Query: 330      tccgacacggtcgaagaatccgcgtcctggagctgcaggac 370
                || || || ||||| ||||| || |||||||||||||||||
Sbjct: 13143563 tctgatactgtcgatgaatctgcatcctggagctgcaggac 13143523



to top

>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0012F14
          Length = 168629

 Score =  161 bits (81), Expect = 2e-36
 Identities = 186/221 (84%)
 Strand = Plus / Minus

                                                                         
Query: 150   tttcacctcccctcggctttgatcagctgaaagaaaaccctgctcatcgacacgtcggag 209
             |||||||| ||||| |||||||| |||||| |||| ||||||||||| || |||||||||
Sbjct: 60931 tttcaccttccctcagctttgattagctgagagaacaccctgctcatggaaacgtcggag 60872

                                                                         
Query: 210   aggtcgtggtcaggctcgtgcgaagctccgtcctccgccatcgtcacgctgatgctctcc 269
             ||||| || |||||||| || ||||||||  | |||||||| ||||||||||||||||| 
Sbjct: 60871 aggtcatgatcaggctcatgtgaagctccagcttccgccattgtcacgctgatgctctcg 60812

                                                                         
Query: 270   atggcaccgacgtgctgaacctgcgacgacaggtcgacgatccggttcatgctgttcacg 329
             | ||| |||| || ||| || |||||||  || ||||| |||| |||||||||||| || 
Sbjct: 60811 agggcgccgatgttctggacttgcgacgggagttcgacaatcctgttcatgctgtttaca 60752

                                                      
Query: 330   tccgacacggtcgaagaatccgcgtcctggagctgcaggac 370
             || || || ||||| ||||| || |||||||||||||||||
Sbjct: 60751 tctgatactgtcgatgaatctgcatcctggagctgcaggac 60711



to top

>dbj|AK065468.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013020G14, full
            insert sequence
          Length = 3151

 Score =  161 bits (81), Expect = 2e-36
 Identities = 186/221 (84%)
 Strand = Plus / Minus

                                                                        
Query: 150  tttcacctcccctcggctttgatcagctgaaagaaaaccctgctcatcgacacgtcggag 209
            |||||||| ||||| |||||||| |||||| |||| ||||||||||| || |||||||||
Sbjct: 2861 tttcaccttccctcagctttgattagctgagagaacaccctgctcatggaaacgtcggag 2802

                                                                        
Query: 210  aggtcgtggtcaggctcgtgcgaagctccgtcctccgccatcgtcacgctgatgctctcc 269
            ||||| || |||||||| || ||||||||  | |||||||| ||||||||||||||||| 
Sbjct: 2801 aggtcatgatcaggctcatgtgaagctccagcttccgccattgtcacgctgatgctctcg 2742

                                                                        
Query: 270  atggcaccgacgtgctgaacctgcgacgacaggtcgacgatccggttcatgctgttcacg 329
            | ||| |||| || ||| || |||||||  || ||||| |||| |||||||||||| || 
Sbjct: 2741 agggcgccgatgttctggacttgcgacgggagttcgacaatcctgttcatgctgtttaca 2682

                                                     
Query: 330  tccgacacggtcgaagaatccgcgtcctggagctgcaggac 370
            || || || ||||| ||||| || |||||||||||||||||
Sbjct: 2681 tctgatactgtcgatgaatctgcatcctggagctgcaggac 2641



to top

>dbj|AK061669.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-F10, full
           insert sequence
          Length = 1037

 Score =  153 bits (77), Expect = 5e-34
 Identities = 185/221 (83%)
 Strand = Plus / Minus

                                                                       
Query: 150 tttcacctcccctcggctttgatcagctgaaagaaaaccctgctcatcgacacgtcggag 209
           |||||||| ||||| |||||||| |||||| |||| ||||||||||| || |||||||||
Sbjct: 744 tttcaccttccctcagctttgattagctgagagaacaccctgctcatggaaacgtcggag 685

                                                                       
Query: 210 aggtcgtggtcaggctcgtgcgaagctccgtcctccgccatcgtcacgctgatgctctcc 269
           ||||| || |||||||| || ||||||||  | |||||||| ||||||||||||||||| 
Sbjct: 684 aggtcatgatcaggctcatgtgaagctccagcttccgccattgtcacgctgatgctctcg 625

                                                                       
Query: 270 atggcaccgacgtgctgaacctgcgacgacaggtcgacgatccggttcatgctgttcacg 329
           | ||| |||| || ||| ||  ||||||  || ||||| |||| |||||||||||| || 
Sbjct: 624 agggcgccgatgttctggactggcgacgggagttcgacaatcctgttcatgctgtttaca 565

                                                    
Query: 330 tccgacacggtcgaagaatccgcgtcctggagctgcaggac 370
           || || || ||||| ||||| || |||||||||||||||||
Sbjct: 564 tctgatactgtcgatgaatctgcatcctggagctgcaggac 524



to top

>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1      gaaatcgaaaccgtagttcag 21
              |||||||||||||||||||||
Sbjct: 190487 gaaatcgaaaccgtagttcag 190467



to top

>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 343     aagaatccgcgtcctggagc 362
               ||||||||||||||||||||
Sbjct: 1308329 aagaatccgcgtcctggagc 1308310



to top

>gb|AC113339.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
              Nipponbare clone OSJNBb0047B19, from chromosome 10,
              complete sequence
          Length = 137015

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 15     agttcagtacacaattacaaggga 38
              |||| |||||||||||||||||||
Sbjct: 129548 agttaagtacacaattacaaggga 129525



to top

>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 319     tgctgttcacgtccgacacg 338
               ||||||||||||||||||||
Sbjct: 1951396 tgctgttcacgtccgacacg 1951377



to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 15      agttcagtacacaattacaaggga 38
               |||| |||||||||||||||||||
Sbjct: 7686554 agttaagtacacaattacaaggga 7686531



to top

>ref|XM_395113.2| PREDICTED: Apis mellifera similar to CG18076-PH, isoform H
            (LOC411644), mRNA
          Length = 8718

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 346  aatccgcgtcctggagctgc 365
            ||||||||||||||||||||
Sbjct: 1801 aatccgcgtcctggagctgc 1782



to top

>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 106     cttgctcacacccctaacgg 125
               ||||||||||||||||||||
Sbjct: 1164835 cttgctcacacccctaacgg 1164854



to top

>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 319     tgctgttcacgtccgacacggtcg 342
               |||||||||||||||||| |||||
Sbjct: 3158222 tgctgttcacgtccgacaaggtcg 3158199



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 245     cgccatcgtcacgctgatgc 264
               ||||||||||||||||||||
Sbjct: 2463966 cgccatcgtcacgctgatgc 2463947



to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 15      agttcagtacacaattacaaggga 38
               |||| |||||||||||||||||||
Sbjct: 7690753 agttaagtacacaattacaaggga 7690730


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,231,891
Number of Sequences: 3902068
Number of extensions: 2231891
Number of successful extensions: 40880
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40681
Number of HSP's gapped (non-prelim): 199
length of query: 374
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 352
effective length of database: 17,147,199,772
effective search space: 6035814319744
effective search space used: 6035814319744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top