ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl04f07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185137.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2834 Score = 99.6 bits (50), Expect = 8e-18 Identities = 113/134 (84%) Strand = Plus / Minus Query: 308 gaaaacgatggcaacggtgcaccttcttggggccgtaggatgacgaggacaaggaacatc 367 ||||| ||||||||||| || |||||||| ||||| |||||||| || || |||||| Sbjct: 2540 gaaaatgatggcaacggagcgccttcttgtggccgcaggatgacaagaacgctaaacatc 2481 Query: 368 ccaagcatcggcagaaccacgagccatttcagcagcttgaagtagtgcacgtggaaggtg 427 |||||||| || |||| ||||||||||||||| |||||| | || |||| |||||||||| Sbjct: 2480 ccaagcattggaagaagcacgagccatttcagaagcttgtaataatgcatgtggaaggtg 2421 Query: 428 agtgagtactcgtc 441 || ||| ||||||| Sbjct: 2420 agcgagaactcgtc 2407
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 99.6 bits (50), Expect = 8e-18 Identities = 113/134 (84%) Strand = Plus / Minus Query: 308 gaaaacgatggcaacggtgcaccttcttggggccgtaggatgacgaggacaaggaacatc 367 ||||| ||||||||||| || |||||||| ||||| |||||||| || || |||||| Sbjct: 34383674 gaaaatgatggcaacggagcgccttcttgtggccgcaggatgacaagaacgctaaacatc 34383615 Query: 368 ccaagcatcggcagaaccacgagccatttcagcagcttgaagtagtgcacgtggaaggtg 427 |||||||| || |||| ||||||||||||||| |||||| | || |||| |||||||||| Sbjct: 34383614 ccaagcattggaagaagcacgagccatttcagaagcttgtaataatgcatgtggaaggtg 34383555 Query: 428 agtgagtactcgtc 441 || ||| ||||||| Sbjct: 34383554 agcgagaactcgtc 34383541
>gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic sequence, complete sequence Length = 115393 Score = 99.6 bits (50), Expect = 8e-18 Identities = 113/134 (84%) Strand = Plus / Plus Query: 308 gaaaacgatggcaacggtgcaccttcttggggccgtaggatgacgaggacaaggaacatc 367 ||||| ||||||||||| || |||||||| ||||| |||||||| || || |||||| Sbjct: 66020 gaaaatgatggcaacggagcgccttcttgtggccgcaggatgacaagaacgctaaacatc 66079 Query: 368 ccaagcatcggcagaaccacgagccatttcagcagcttgaagtagtgcacgtggaaggtg 427 |||||||| || |||| ||||||||||||||| |||||| | || |||| |||||||||| Sbjct: 66080 ccaagcattggaagaagcacgagccatttcagaagcttgtaataatgcatgtggaaggtg 66139 Query: 428 agtgagtactcgtc 441 || ||| ||||||| Sbjct: 66140 agcgagaactcgtc 66153
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 99.6 bits (50), Expect = 8e-18 Identities = 113/134 (84%) Strand = Plus / Minus Query: 308 gaaaacgatggcaacggtgcaccttcttggggccgtaggatgacgaggacaaggaacatc 367 ||||| ||||||||||| || |||||||| ||||| |||||||| || || |||||| Sbjct: 34474146 gaaaatgatggcaacggagcgccttcttgtggccgcaggatgacaagaacgctaaacatc 34474087 Query: 368 ccaagcatcggcagaaccacgagccatttcagcagcttgaagtagtgcacgtggaaggtg 427 |||||||| || |||| ||||||||||||||| |||||| | || |||| |||||||||| Sbjct: 34474086 ccaagcattggaagaagcacgagccatttcagaagcttgtaataatgcatgtggaaggtg 34474027 Query: 428 agtgagtactcgtc 441 || ||| ||||||| Sbjct: 34474026 agcgagaactcgtc 34474013
>dbj|AK104830.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A01, full insert sequence Length = 880 Score = 99.6 bits (50), Expect = 8e-18 Identities = 113/134 (84%) Strand = Plus / Minus Query: 308 gaaaacgatggcaacggtgcaccttcttggggccgtaggatgacgaggacaaggaacatc 367 ||||| ||||||||||| || |||||||| ||||| |||||||| || || |||||| Sbjct: 563 gaaaatgatggcaacggagcgccttcttgtggccgcaggatgacaagaacgctaaacatc 504 Query: 368 ccaagcatcggcagaaccacgagccatttcagcagcttgaagtagtgcacgtggaaggtg 427 |||||||| || |||| ||||||||||||||| |||||| | || |||| |||||||||| Sbjct: 503 ccaagcattggaagaagcacgagccatttcagaagcttgtaataatgcatgtggaaggtg 444 Query: 428 agtgagtactcgtc 441 || ||| ||||||| Sbjct: 443 agcgagaactcgtc 430
>dbj|AK067902.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121O19, full insert sequence Length = 3031 Score = 99.6 bits (50), Expect = 8e-18 Identities = 113/134 (84%) Strand = Plus / Minus Query: 308 gaaaacgatggcaacggtgcaccttcttggggccgtaggatgacgaggacaaggaacatc 367 ||||| ||||||||||| || |||||||| ||||| |||||||| || || |||||| Sbjct: 2687 gaaaatgatggcaacggagcgccttcttgtggccgcaggatgacaagaacgctaaacatc 2628 Query: 368 ccaagcatcggcagaaccacgagccatttcagcagcttgaagtagtgcacgtggaaggtg 427 |||||||| || |||| ||||||||||||||| |||||| | || |||| |||||||||| Sbjct: 2627 ccaagcattggaagaagcacgagccatttcagaagcttgtaataatgcatgtggaaggtg 2568 Query: 428 agtgagtactcgtc 441 || ||| ||||||| Sbjct: 2567 agcgagaactcgtc 2554
>gb|AY111316.1| Zea mays CL12529_1 mRNA sequence Length = 1152 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 302 ttccgcgaaaacgatggcaacggtgcaccttcttggggcc 341 ||||| ||||||||||||| ||| |||||||||||||||| Sbjct: 369 ttccgtgaaaacgatggcagcggcgcaccttcttggggcc 408 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 408 agtagtgcacgtggaaggtgagtgagtactcgtcgg 443 |||| |||| |||||||||||||||| ||||||||| Sbjct: 475 agtaatgcatgtggaaggtgagtgagaactcgtcgg 510
>ref|NM_111744.3| Arabidopsis thaliana DEX1 (DEFECTIVE IN EXINE FORMATION 1) AT3G09090 (DEX1) mRNA, complete cds Length = 3722 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 330 cttcttggggccgtaggatgacgaggacaaggaacatcccaagcatcggcagaaccacga 389 ||||||| |||||||| || ||||| | | ||||||||| |||||||| ||||| | | Sbjct: 2902 cttcttgaggccgtagtatcacgagcagaccgaacatcccgagcatcgggagaacaagaa 2843 Query: 390 gccatttcagcagcttgaagta 411 |||||||||| |||||| |||| Sbjct: 2842 gccatttcagaagcttgtagta 2821
>gb|AC009326.8|ATAC009326 Arabidopsis thaliana chromosome III P1 MZB10 genomic sequence, complete sequence Length = 85561 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Plus Query: 330 cttcttggggccgtaggatgacgaggacaaggaacatcccaagcatcggcagaaccacga 389 ||||||| |||||||| || ||||| | | ||||||||| |||||||| ||||| | | Sbjct: 43859 cttcttgaggccgtagtatcacgagcagaccgaacatcccgagcatcgggagaacaagaa 43918 Query: 390 gccatttcagcagcttgaagta 411 |||||||||| |||||| |||| Sbjct: 43919 gccatttcagaagcttgtagta 43940
>gb|AF257187.1|AF257187 Arabidopsis thaliana defective in exine formation (DEX1) mRNA, complete cds Length = 3112 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 330 cttcttggggccgtaggatgacgaggacaaggaacatcccaagcatcggcagaaccacga 389 ||||||| |||||||| || ||||| | | ||||||||| |||||||| ||||| | | Sbjct: 2902 cttcttgaggccgtagtatcacgagcagaccgaacatcccgagcatcgggagaacaagaa 2843 Query: 390 gccatttcagcagcttgaagta 411 |||||||||| |||||| |||| Sbjct: 2842 gccatttcagaagcttgtagta 2821
>gb|AF257186.1|AF257186 Arabidopsis thaliana defective in exine formation (DEX1) gene, complete cds Length = 7353 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 330 cttcttggggccgtaggatgacgaggacaaggaacatcccaagcatcggcagaaccacga 389 ||||||| |||||||| || ||||| | | ||||||||| |||||||| ||||| | | Sbjct: 6581 cttcttgaggccgtagtatcacgagcagaccgaacatcccgagcatcgggagaacaagaa 6522 Query: 390 gccatttcagcagcttgaagta 411 |||||||||| |||||| |||| Sbjct: 6521 gccatttcagaagcttgtagta 6500
>gb|BT005785.1| Arabidopsis thaliana clone RAFL15-34-O06 (R50099) unknown protein (At3g09090) mRNA, partial cds Length = 2893 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 330 cttcttggggccgtaggatgacgaggacaaggaacatcccaagcatcggcagaaccacga 389 ||||||| |||||||| || ||||| | | ||||||||| |||||||| ||||| | | Sbjct: 2637 cttcttgaggccgtagtatcacgagcagaccgaacatcccgagcatcgggagaacaagaa 2578 Query: 390 gccatttcagcagcttgaagta 411 |||||||||| |||||| |||| Sbjct: 2577 gccatttcagaagcttgtagta 2556
>emb|AL353582.16| Human DNA sequence from clone CTD-2190D5 on chromosome 20 Contains ESTs, STSs and GSSs, complete sequence Length = 115551 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Plus Query: 88 tcaaaactcaactgtatttctata 111 |||||||||||||||||||||||| Sbjct: 81214 tcaaaactcaactgtatttctata 81237
>emb|AL138751.18| Human DNA sequence from clone RP11-346E17 on chromosome 9 Contains the 5' end of a novel gene (CGI-67), a novel gene, a novel gene (LOC138240) and a CpG island, complete sequence Length = 195844 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 89 caaaactcaactgtatttctatac 112 |||||||||||||||||||||||| Sbjct: 99133 caaaactcaactgtatttctatac 99110
>gb|AC091956.3| Homo sapiens chromosome 5 clone RP11-430F16, complete sequence Length = 209754 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 89 caaaactcaactgtatttctatac 112 |||||||||||||||||||||||| Sbjct: 72435 caaaactcaactgtatttctatac 72412
>gb|AC139497.3| Homo sapiens chromosome 5 clone RP11-855C21, complete sequence Length = 199004 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Plus Query: 89 caaaactcaactgtatttctatac 112 |||||||||||||||||||||||| Sbjct: 126557 caaaactcaactgtatttctatac 126580
>emb|AL358434.16| Human DNA sequence from clone RP11-471P6 on chromosome 1 Contains the 5' end of the XPR1 gene for xenotropic and polytropic retrovirus receptor, complete sequence Length = 178375 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Minus Query: 89 caaaactcaactgtatttctata 111 ||||||||||||||||||||||| Sbjct: 153626 caaaactcaactgtatttctata 153604
>emb|BX294153.1| Pirellula sp. strain 1 complete genome; segment 21/24 Length = 293350 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 cgagccatttcagcagcttga 407 ||||||||||||||||||||| Sbjct: 112066 cgagccatttcagcagcttga 112046
>emb|AJ606944.1| Zea mays mRNA for cytokinin oxidase 3 (cko3 gene), clone 2 Length = 2146 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 cagcagcttgaagtagtgcac 417 ||||||||||||||||||||| Sbjct: 109 cagcagcttgaagtagtgcac 89
>emb|AJ606943.1| Zea mays mRNA for cytokinin oxidase 3 (cko3 gene), clone 1 Length = 2134 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 cagcagcttgaagtagtgcac 417 ||||||||||||||||||||| Sbjct: 116 cagcagcttgaagtagtgcac 96
>gb|AC114788.4| Homo sapiens BAC clone RP11-648F7 from 2, complete sequence Length = 116951 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 88 tcaaaactcaactgtatttctatac 112 ||||||||||| ||||||||||||| Sbjct: 35876 tcaaaactcaattgtatttctatac 35852
>gb|AC009226.3| Homo sapiens BAC clone RP11-167C7 from 2, complete sequence Length = 138778 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 88 tcaaaactcaactgtatttctatac 112 |||||| |||||||||||||||||| Sbjct: 14323 tcaaaaatcaactgtatttctatac 14347
>gb|AF461899.1| Homo sapiens FP6628 mRNA, complete cds Length = 3102 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 caaaactcaactgtatttctatac 112 ||||| |||||||||||||||||| Sbjct: 1838 caaaaatcaactgtatttctatac 1861
>gb|AC141112.7| Medicago truncatula clone mth2-15m12, complete sequence Length = 135248 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 atttctatactgtaaaactatatc 126 ||||||||| |||||||||||||| Sbjct: 57869 atttctataatgtaaaactatatc 57892
>emb|AL591901.12| Human DNA sequence from clone RP11-400C4 on chromosome 1, complete sequence Length = 129844 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 tgtgcagaggccctgtcatg 241 |||||||||||||||||||| Sbjct: 81163 tgtgcagaggccctgtcatg 81182
>emb|AL359914.14| Human DNA sequence from clone RP11-637B23 on chromosome X Contains a H3 histone, family 3B (H3F3B) pseudogene, the BMP15 gene for bone morphogenetic protein 15, and a high-mobility group box 1 (HMGB1) pseudogene, complete sequence Length = 125495 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 caaaactcaactgtatttctatac 112 ||||||||||||| |||||||||| Sbjct: 74522 caaaactcaactgaatttctatac 74545
>emb|AL390739.8| Human DNA sequence from clone RP11-157F14 on chromosome 13 Contains two CpG islands, complete sequence Length = 123887 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 tcaaaactcaactgtatttctata 111 |||||| ||||||||||||||||| Sbjct: 50834 tcaaaagtcaactgtatttctata 50811
>emb|AL353710.7| Human DNA sequence from clone RP11-470P4 on chromosome 9 Contains a novel gene, the 5' end of the CHAC gene for chorea acanthocytosis and a CpG island, complete sequence Length = 110633 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 caaaactcaactgtatttctatac 112 |||||||||| ||||||||||||| Sbjct: 109107 caaaactcaattgtatttctatac 109084
>emb|AL096677.21|HSJ322G13 Human DNA sequence from clone RP3-322G13 on chromosome 20p11.21-12.3 Contains the gene for NTF2-related export protein (NXT1), the ZNF336 gene for zinc finger protein 336, two putative novel genes, the NAPB gene for N-ethylmaleimide-sensitive factor attachment protein beta, the CSTL1 gene for cystatin-like 1, the CST11 gene for cystatin 11 and six CpG islands, complete sequence Length = 112180 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 caaaactcaactgtatttctatac 112 ||||| |||||||||||||||||| Sbjct: 42775 caaaattcaactgtatttctatac 42798
>emb|AL049641.11|HSDA22P16 Human DNA sequence from clone RP6-22P16 on chromosome Xq11.1-13.1 Contains a zinc finger protein 208 (ZNF208) pseudogene, complete sequence Length = 103367 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 caaaactcaactgtatttctatac 112 |||||||||| ||||||||||||| Sbjct: 67212 caaaactcaattgtatttctatac 67235
>emb|AL035665.32|HS644L1 Human DNA sequence from clone RP4-644L1 on chromosome 20q12 Contains the MAFB gene for v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian), a novel gene and two CpG islands, complete sequence Length = 145593 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 caaaactcaactgtatttctatac 112 ||||| |||||||||||||||||| Sbjct: 13232 caaaaatcaactgtatttctatac 13255
>emb|AL009181.1|HS212P9 Human DNA sequence from clone RP1-212P9 on chromosome 1p34.1-35 Contains the OPRD1 gene for opioid receptor delta 1, two novel genes, the 5' end of the EPB41 gene for erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) and a CpG island, complete sequence Length = 148540 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 tcaaaactcaactgtatttctata 111 |||||| ||||||||||||||||| Sbjct: 20058 tcaaaaatcaactgtatttctata 20081
>gb|AC007998.10| Homo sapiens chromosome 18, clone RP11-322E11, complete sequence Length = 207799 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 caaaactcaactgtatttctatac 112 ||||| |||||||||||||||||| Sbjct: 56889 caaaaatcaactgtatttctatac 56866
>emb|AL109946.12|HSJ820B18 Human DNA sequence from clone RP5-820B18 on chromosome Xq22.2-23 Contains part of a novel gene for a protein similar to nuclear cap binding protein and the 5' end of the MID1 gene for midline 1 (Opitz/BBB syndrome) protein, complete sequence Length = 94081 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 caaaactcaactgtatttctatac 112 ||||| |||||||||||||||||| Sbjct: 9071 caaaaatcaactgtatttctatac 9094
>gb|AC124892.8| Homo sapiens 12 BAC RP11-574B6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 20925 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 caaaaaattcttcctcaaaa 93 |||||||||||||||||||| Sbjct: 8262 caaaaaattcttcctcaaaa 8243
>gb|AC120053.4| Homo sapiens chromosome 8, clone CTD-2006H14, complete sequence Length = 124497 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 caaaactcaactgtatttctatac 112 ||||| |||||||||||||||||| Sbjct: 5161 caaaaatcaactgtatttctatac 5184
>gb|AC010834.19| Homo sapiens chromosome 8, clone RP11-10N23, complete sequence Length = 175967 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 caaaactcaactgtatttctatac 112 ||||| |||||||||||||||||| Sbjct: 65642 caaaaatcaactgtatttctatac 65619
>emb|BX511134.8| Zebrafish DNA sequence from clone CH211-134C9 in linkage group 1, complete sequence Length = 188290 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 aaaaaattcttcctcaaaac 94 |||||||||||||||||||| Sbjct: 61397 aaaaaattcttcctcaaaac 61416
>gb|AF137160.1| Ostracion sp. IMCB-2002 dystrophin (Dyst) gene, partial cds Length = 378 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 acatacatcaggtcgacaca 23 |||||||||||||||||||| Sbjct: 82 acatacatcaggtcgacaca 63
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 tttcagcagcttgaagtagt 413 |||||||||||||||||||| Sbjct: 3752401 tttcagcagcttgaagtagt 3752382
>dbj|AK019271.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810431G11 product:glutathione S-transferase, alpha 4, full insert sequence Length = 926 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 tgtgtcaaaaaattcttcctcaaa 92 |||||||| ||||||||||||||| Sbjct: 205 tgtgtcaagaaattcttcctcaaa 182
>ref|NM_069123.1| Caenorhabditis elegans T28C6.3 (T28C6.3) mRNA, complete cds Length = 603 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 aggatgacgaggacaaggaa 363 |||||||||||||||||||| Sbjct: 380 aggatgacgaggacaaggaa 399
>gb|AC095046.3| Homo sapiens BAC clone RP11-147K21 from 4, complete sequence Length = 156786 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 gaggacaaggaacatcccaa 371 |||||||||||||||||||| Sbjct: 147010 gaggacaaggaacatcccaa 147029
>gb|AC008281.3| Homo sapiens BAC clone RP11-481E6 from 2, complete sequence Length = 131085 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 aaaactcaactgtatttcta 109 |||||||||||||||||||| Sbjct: 85055 aaaactcaactgtatttcta 85036
>gb|AC004826.3|AC004826 Homo sapiens PAC clone RP1-309D19 from 5, complete sequence Length = 149172 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 caaaactcaactgtatttctatac 112 ||||| |||||||||||||||||| Sbjct: 40483 caaaaatcaactgtatttctatac 40506
>gb|AC010087.3| Homo sapiens BAC clone RP11-241M13 from 2, complete sequence Length = 202029 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 caaaactcaactgtatttctatac 112 ||||| |||||||||||||||||| Sbjct: 131285 caaaaatcaactgtatttctatac 131308
>gb|AC113382.2| Homo sapiens chromosome 5 clone RP11-325L7, complete sequence Length = 166870 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 caaaactcaactgtatttctatac 112 ||||| |||||||||||||||||| Sbjct: 55239 caaaaatcaactgtatttctatac 55216
>gb|AF245226.1|AF245226 Homo sapiens chromosome 21 map 21q21 clone B845I12, complete sequence Length = 178237 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 aaaaaattcttcctcaaaac 94 |||||||||||||||||||| Sbjct: 139920 aaaaaattcttcctcaaaac 139939
>emb|AJ234430.1|HVU234430 Hordeum vulgare partial mRNA; clone cMWG0704 Length = 521 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 ttacgatgacacatcaccag 51 |||||||||||||||||||| Sbjct: 347 ttacgatgacacatcaccag 328
>gb|AY530950.1| Zea mays putative zinc finger protein (Z438D03.1), unknown (Z438D03.5), epsilon-COP (Z438D03.6), putative kinase (Z438D03.7), unknown (Z438D03.25), and C1-B73 (Z438D03.27) genes, complete cds Length = 185988 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 tccgcgaaaacgatggcaac 322 |||||||||||||||||||| Sbjct: 11813 tccgcgaaaacgatggcaac 11832
>emb|Z54238.1|CET28C6 Caenorhabditis elegans Cosmid T28C6, complete sequence Length = 33819 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 aggatgacgaggacaaggaa 363 |||||||||||||||||||| Sbjct: 14323 aggatgacgaggacaaggaa 14342
>dbj|AP001674.1| Homo sapiens genomic DNA, chromosome 21q, section 18/105 Length = 340000 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 aaaaaattcttcctcaaaac 94 |||||||||||||||||||| Sbjct: 276715 aaaaaattcttcctcaaaac 276734
>dbj|AP000486.6| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-23I22, complete sequence Length = 152472 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 caaaactcaactgtatttctatac 112 ||||| |||||||||||||||||| Sbjct: 113042 caaaaatcaactgtatttctatac 113065
>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome Length = 1080084 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 ttgaagtagtgcacgtggaa 423 |||||||||||||||||||| Sbjct: 1069106 ttgaagtagtgcacgtggaa 1069087
>dbj|AP003467.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1205A7 Length = 150708 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 attcttcctcaaaactcaactgta 103 |||||||| ||||||||||||||| Sbjct: 90541 attcttccacaaaactcaactgta 90518
>emb|AL157359.1|HSP19646 Homo sapiens chromosome 21 sequence from PAC RP4-646P19 map 21q21 region D21S189-LA297, complete sequence Length = 121360 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 aaaaaattcttcctcaaaac 94 |||||||||||||||||||| Sbjct: 1095 aaaaaattcttcctcaaaac 1076
>emb|CT571261.1| Medicago truncatula chromosome 5 clone mth2-67l4, COMPLETE SEQUENCE Length = 136545 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 aaaaattcttcctcaaaactcaac 99 |||||||||||||| ||||||||| Sbjct: 58235 aaaaattcttcctctaaactcaac 58212
>emb|AL669959.22| Mouse DNA sequence from clone RP23-221H6 on chromosome 4, complete sequence Length = 213801 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 aattcttcctcaaaactcaa 98 |||||||||||||||||||| Sbjct: 23072 aattcttcctcaaaactcaa 23053
>dbj|AP003551.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1967D12, complete sequence Length = 160952 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 attcttcctcaaaactcaactgta 103 |||||||| ||||||||||||||| Sbjct: 8941 attcttccacaaaactcaactgta 8918 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,677,979 Number of Sequences: 3902068 Number of extensions: 3677979 Number of successful extensions: 71200 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71017 Number of HSP's gapped (non-prelim): 177 length of query: 455 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 433 effective length of database: 17,147,199,772 effective search space: 7424737501276 effective search space used: 7424737501276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
