ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464667.1| Oryza sativa (japonica cultivar-group), mRNA 178 1e-41
2dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 1e-41
3dbj|AK060032.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 1e-41
4gb|BT016619.1| Zea mays clone Contig452 mRNA sequence 161 2e-36
5gb|AY104402.1| Zea mays PCO137047 mRNA sequence 161 2e-36
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 139 8e-30
7dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic D... 139 8e-30
8ref|XM_610610.2| PREDICTED: Bos taurus similar to olfactory rece... 44 0.36
9gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 44 0.36
10ref|XM_482249.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
11ref|XM_450615.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
12ref|XM_450614.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
13gb|BT013806.1| Lycopersicon esculentum clone 132727F, mRNA sequence 42 1.4
14emb|BX571664.8| Zebrafish DNA sequence from clone DKEYP-82H4 in ... 42 1.4
15dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 42 1.4
16dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
17dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
18dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
19dbj|AK068512.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
20dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
21emb|BX571878.20| Zebrafish DNA sequence from clone DKEY-265E7 in... 42 1.4
22gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 42 1.4
23gb|AC116472.14| Mus musculus chromosome 7, clone RP23-384B23, co... 40 5.7
24gb|AC117621.7| Mus musculus chromosome 8, clone RP23-114B10, com... 40 5.7
25gb|AC114995.7| Mus musculus chromosome 8, clone RP23-171P5, comp... 40 5.7
26gb|AC166559.2| Spironucleus vortens clone JGIBAWF-5H13, complete... 40 5.7
27gb|AC138174.9| Mus musculus, clone RP24-198I22, complete sequence 40 5.7
28emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 i... 40 5.7
29gb|AY527062.1| Mytilus edulis 18S ribosomal RNA gene, partial se... 40 5.7
30gb|AC134763.4| Rattus norvegicus BAC CH230-221M14 (Children's H... 40 5.7
31emb|BX005315.7| Zebrafish DNA sequence from clone DKEY-79E6, com... 40 5.7
32dbj|AB201231.1| Musculista senhousia gene for 18S ribosomal RNA,... 40 5.7
33dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.7
34gb|AF124207.1|AF124207 Musculus senhousei 18S ribosomal RNA gene... 40 5.7
35gb|AF124206.1|AF124206 Musculus discors 18S ribosomal RNA gene, ... 40 5.7
36gb|L33448.1|MSLSRRNAA Mytilus edulis 18S small subunit ribosomal... 40 5.7
37gb|L33449.1|MSLSRRNAB Mytilus californianus 18S small subunit ri... 40 5.7
38gb|L33451.1|MSLSRRNAC Mytilus galloprovincialis isolate Morgat, ... 40 5.7
39gb|L33453.1|MSLSRRNAE Mytilus trossulus strain Pacific strain 1 ... 40 5.7
40gb|L33454.1|MSLSRRNAF Mytilus trossulus strain Pacific strain 2 ... 40 5.7
41gb|L33455.1|MSLSRRNAG Mytilus trossulus strain Pacific strain 3 ... 40 5.7
42emb|AL929222.6| Zebrafish DNA sequence from clone DKEY-31N5, com... 40 5.7
43emb|X78814.1|NPPSY N.pseudonarcissus mRNA for phytoene synthase 40 5.7
44dbj|AP001561.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.7
45gb|DQ310715.1| Mytella strigata 18S ribosomal RNA gene, partial ... 40 5.7
46emb|X90960.1|AN18SRRNA A.noae 18S ribosomal RNA gene 40 5.7
47emb|X91403.1|AGEL18S A.gelatinosum 18S ribosomal RNA gene 40 5.7
48gb|L24490.1|MSLMRNAB Mytilus trossulus 18S ribosomal RNA (18S rRNA) 40 5.7
49gb|L24489.1|MSLMRNAA Mytilus edulis 18S ribosomal RNA (18SrRNA) 40 5.7 
>ref|XM_464667.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3020

 Score =  178 bits (90), Expect = 1e-41
 Identities = 222/266 (83%)
 Strand = Plus / Minus

                                                                        
Query: 158  tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 217
            |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 2723 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 2664

                                                                        
Query: 218  atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 277
            |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 2663 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 2604

                                                                        
Query: 278  ttgaagaactcctctacctcgtcacccttctcgtctgcggcgagcggtgggacagtgacg 337
            ||||||||||||||  | ||||| ||| | || || | |   ||||||| ||| |||  |
Sbjct: 2603 ttgaagaactcctccgcgtcgtcgcccatttcatcggtgcgcagcggtgagacggtggtg 2544

                                                                        
Query: 338  gtgatgaaataggtgagcaggtgtccagtgaaggtctctgctatgtagtcccagttttcc 397
            |  | |||||||||||| ||   ||||| |||||| ||||  ||||||||||| ||||||
Sbjct: 2543 gaaacgaaataggtgagaagagttccagagaaggtgtctgaaatgtagtcccacttttcc 2484

                                      
Query: 398  ttcaaccatgtccatgccacctcatg 423
            ||||||||||||||||||||||||||
Sbjct: 2483 ttcaaccatgtccatgccacctcatg 2458
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>dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089H24, full
            insert sequence
          Length = 3020

 Score =  178 bits (90), Expect = 1e-41
 Identities = 222/266 (83%)
 Strand = Plus / Minus

                                                                        
Query: 158  tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 217
            |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 2723 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 2664

                                                                        
Query: 218  atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 277
            |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 2663 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 2604

                                                                        
Query: 278  ttgaagaactcctctacctcgtcacccttctcgtctgcggcgagcggtgggacagtgacg 337
            ||||||||||||||  | ||||| ||| | || || | |   ||||||| ||| |||  |
Sbjct: 2603 ttgaagaactcctccgcgtcgtcgcccatttcatcggtgcgcagcggtgagacggtggtg 2544

                                                                        
Query: 338  gtgatgaaataggtgagcaggtgtccagtgaaggtctctgctatgtagtcccagttttcc 397
            |  | |||||||||||| ||   ||||| |||||| ||||  ||||||||||| ||||||
Sbjct: 2543 gaaacgaaataggtgagaagagttccagagaaggtgtctgaaatgtagtcccacttttcc 2484

                                      
Query: 398  ttcaaccatgtccatgccacctcatg 423
            ||||||||||||||||||||||||||
Sbjct: 2483 ttcaaccatgtccatgccacctcatg 2458
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>dbj|AK060032.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H06, full
           insert sequence
          Length = 977

 Score =  178 bits (90), Expect = 1e-41
 Identities = 222/266 (83%)
 Strand = Plus / Minus

                                                                       
Query: 158 tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 217
           |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 680 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 621

                                                                       
Query: 218 atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 277
           |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 620 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 561

                                                                       
Query: 278 ttgaagaactcctctacctcgtcacccttctcgtctgcggcgagcggtgggacagtgacg 337
           ||||||||||||||  | ||||| ||| | || || | |   ||||||| ||| |||  |
Sbjct: 560 ttgaagaactcctccgcgtcgtcgcccatttcatcggtgcgcagcggtgagacggtggtg 501

                                                                       
Query: 338 gtgatgaaataggtgagcaggtgtccagtgaaggtctctgctatgtagtcccagttttcc 397
           |  | |||||||||||| ||   ||||| |||||| ||||  ||||||||||| ||||||
Sbjct: 500 gaaacgaaataggtgagaagagttccagagaaggtgtctgaaatgtagtcccacttttcc 441

                                     
Query: 398 ttcaaccatgtccatgccacctcatg 423
           ||||||||||||||||||||||||||
Sbjct: 440 ttcaaccatgtccatgccacctcatg 415
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>gb|BT016619.1| Zea mays clone Contig452 mRNA sequence
          Length = 1911

 Score =  161 bits (81), Expect = 2e-36
 Identities = 132/149 (88%)
 Strand = Plus / Minus

                                                                        
Query: 143  tgcttgtgagcgagctccttgagaacatttccgaggtcggactcgcccttggtgctcttg 202
            ||||||| ||| |||| |||||||||||| |||||||| | |||| ||||| || |||||
Sbjct: 1769 tgcttgtaagccagcttcttgagaacattgccgaggtcagcctcggccttgatgttcttg 1710

                                                                        
Query: 203  acccacttggccttgatcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctc 262
            ||||| | ||| ||||||||||||||||||||||||||| |||| |||||||||||| ||
Sbjct: 1709 acccattgggcattgatcctcaccctctcgatgctctgcctcacagtcctcgcgatgttc 1650

                                         
Query: 263  gccttggtcctgctcttgaagaactcctc 291
            |||||||| ||||||||||| ||||||||
Sbjct: 1649 gccttggttctgctcttgaaaaactcctc 1621
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>gb|AY104402.1| Zea mays PCO137047 mRNA sequence
          Length = 2125

 Score =  161 bits (81), Expect = 2e-36
 Identities = 132/149 (88%)
 Strand = Plus / Minus

                                                                        
Query: 143  tgcttgtgagcgagctccttgagaacatttccgaggtcggactcgcccttggtgctcttg 202
            ||||||| ||| |||| |||||||||||| |||||||| | |||| ||||| || |||||
Sbjct: 1807 tgcttgtaagccagcttcttgagaacattgccgaggtcagcctcggccttgatgttcttg 1748

                                                                        
Query: 203  acccacttggccttgatcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctc 262
            ||||| | ||| ||||||||||||||||||||||||||| |||| |||||||||||| ||
Sbjct: 1747 acccattgggcattgatcctcaccctctcgatgctctgcctcacagtcctcgcgatgttc 1688

                                         
Query: 263  gccttggtcctgctcttgaagaactcctc 291
            |||||||| ||||||||||| ||||||||
Sbjct: 1687 gccttggttctgctcttgaaaaactcctc 1659
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  139 bits (70), Expect = 8e-30
 Identities = 118/134 (88%)
 Strand = Plus / Minus

                                                                           
Query: 158     tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 217
               |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 6605319 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 6605260

                                                                           
Query: 218     atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 277
               |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 6605259 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 6605200

                             
Query: 278     ttgaagaactcctc 291
               ||||||||||||||
Sbjct: 6605199 ttgaagaactcctc 6605186



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                           
Query: 396     ccttcaaccatgtccatgccacctcatg 423
               ||||||||||||||||||||||||||||
Sbjct: 6604903 ccttcaaccatgtccatgccacctcatg 6604876



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                       
Query: 343     gaaataggtgagcaggtgtccagtgaaggtctctgctatgtagtcccagttttcct 398
               |||||||||||| ||   ||||| |||||| ||||  ||||||||||| |||||||
Sbjct: 6605039 gaaataggtgagaagagttccagagaaggtgtctgaaatgtagtcccacttttcct 6604984
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>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0027A02
          Length = 140402

 Score =  139 bits (70), Expect = 8e-30
 Identities = 118/134 (88%)
 Strand = Plus / Minus

                                                                         
Query: 158   tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 217
             |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 39694 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 39635

                                                                         
Query: 218   atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 277
             |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 39634 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 39575

                           
Query: 278   ttgaagaactcctc 291
             ||||||||||||||
Sbjct: 39574 ttgaagaactcctc 39561



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                         
Query: 396   ccttcaaccatgtccatgccacctcatg 423
             ||||||||||||||||||||||||||||
Sbjct: 39278 ccttcaaccatgtccatgccacctcatg 39251



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                     
Query: 343   gaaataggtgagcaggtgtccagtgaaggtctctgctatgtagtcccagttttcct 398
             |||||||||||| ||   ||||| |||||| ||||  ||||||||||| |||||||
Sbjct: 39414 gaaataggtgagaagagttccagagaaggtgtctgaaatgtagtcccacttttcct 39359
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>ref|XM_610610.2| PREDICTED: Bos taurus similar to olfactory receptor 62 (LOC532100),
           partial mRNA
          Length = 1320

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 287 tcctctacctcgtcacccttct 308
           ||||||||||||||||||||||
Sbjct: 287 tcctctacctcgtcacccttct 308
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 264     ccttggtcctgctcttgaagaa 285
               ||||||||||||||||||||||
Sbjct: 1878602 ccttggtcctgctcttgaagaa 1878581
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>ref|XM_482249.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2685

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 386  tcccagttttccttcaaccatgtccatgc 414
            |||||||||||||||||||| | ||||||
Sbjct: 2432 tcccagttttccttcaaccaggcccatgc 2404
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>ref|XM_450615.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2622

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 386  tcccagttttccttcaaccatgtccatgc 414
            |||||||||||||||||||| | ||||||
Sbjct: 2372 tcccagttttccttcaaccaggaccatgc 2344
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>ref|XM_450614.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2984

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 205  ccacttggccttgatcctcaccctctcgatgctctgcttca 245
            |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 2548 ccacctggcgttgatcagcaccctctcgaggctctgcttca 2508



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 386  tcccagttttccttcaaccatgtccatgc 414
            |||||||||||||||||||| | ||||||
Sbjct: 2364 tcccagttttccttcaaccaggaccatgc 2336
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>gb|BT013806.1| Lycopersicon esculentum clone 132727F, mRNA sequence
          Length = 2861

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 224  accctctcgatgctctgcttcaccgtcct 252
            |||||||| ||||||||||||| ||||||
Sbjct: 2564 accctctcaatgctctgcttcaacgtcct 2536
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>emb|BX571664.8| Zebrafish DNA sequence from clone DKEYP-82H4 in linkage group 4,
             complete sequence
          Length = 204160

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   atatgcttcccctatctagga 122
             |||||||||||||||||||||
Sbjct: 25183 atatgcttcccctatctagga 25203
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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 66      gctcagtcaaaccagcaccac 86
               |||||||||||||||||||||
Sbjct: 1031023 gctcagtcaaaccagcaccac 1031043
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 205      ccacttggccttgatcctcaccctctcgatgctctgcttca 245
                |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 11797072 ccacctggcgttgatcagcaccctctcgaggctctgcttca 11797032
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>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1506_A04
          Length = 114998

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 205   ccacttggccttgatcctcaccctctcgatgctctgcttca 245
             |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 39890 ccacctggcgttgatcagcaccctctcgaggctctgcttca 39850
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>dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N11, full
            insert sequence
          Length = 2975

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 386  tcccagttttccttcaaccatgtccatgc 414
            |||||||||||||||||||| | ||||||
Sbjct: 2474 tcccagttttccttcaaccaggcccatgc 2446
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>dbj|AK068512.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152F03, full
            insert sequence
          Length = 2232

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 386  tcccagttttccttcaaccatgtccatgc 414
            |||||||||||||||||||| | ||||||
Sbjct: 1633 tcccagttttccttcaaccaggaccatgc 1605
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>dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134N07, full
            insert sequence
          Length = 2985

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 205  ccacttggccttgatcctcaccctctcgatgctctgcttca 245
            |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 2549 ccacctggcgttgatcagcaccctctcgaggctctgcttca 2509



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 386  tcccagttttccttcaaccatgtccatgc 414
            |||||||||||||||||||| | ||||||
Sbjct: 2365 tcccagttttccttcaaccaggaccatgc 2337
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>emb|BX571878.20| Zebrafish DNA sequence from clone DKEY-265E7 in linkage group 14,
             complete sequence
          Length = 177362

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   atatgcttcccctatctagga 122
             |||||||||||||||||||||
Sbjct: 64951 atatgcttcccctatctagga 64971
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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 66     gctcagtcaaaccagcaccac 86
              |||||||||||||||||||||
Sbjct: 589854 gctcagtcaaaccagcaccac 589834
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>gb|AC116472.14| Mus musculus chromosome 7, clone RP23-384B23, complete sequence
          Length = 216191

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 393    tttccttcaaccatgtccat 412
              ||||||||||||||||||||
Sbjct: 172386 tttccttcaaccatgtccat 172405
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>gb|AC117621.7| Mus musculus chromosome 8, clone RP23-114B10, complete sequence
          Length = 214933

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 344    aaataggtgagcaggtgtcc 363
              ||||||||||||||||||||
Sbjct: 158186 aaataggtgagcaggtgtcc 158167
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>gb|AC114995.7| Mus musculus chromosome 8, clone RP23-171P5, complete sequence
          Length = 242745

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 344  aaataggtgagcaggtgtcc 363
            ||||||||||||||||||||
Sbjct: 5015 aaataggtgagcaggtgtcc 4996
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>gb|AC166559.2| Spironucleus vortens clone JGIBAWF-5H13, complete sequence
          Length = 31974

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 304   cttctcgtctgcggcgagcg 323
             ||||||||||||||||||||
Sbjct: 24612 cttctcgtctgcggcgagcg 24631
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>gb|AC138174.9| Mus musculus, clone RP24-198I22, complete sequence
          Length = 177516

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    tttattattaccatattatt 41
             ||||||||||||||||||||
Sbjct: 88583 tttattattaccatattatt 88564
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>emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 in linkage group 3,
             complete sequence
          Length = 197042

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   cccacttggccttgatcctc 223
             ||||||||||||||||||||
Sbjct: 10539 cccacttggccttgatcctc 10520
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>gb|AY527062.1| Mytilus edulis 18S ribosomal RNA gene, partial sequence
          Length = 1823

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 tcgcccttggtgctcttgac 204
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
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>gb|AC134763.4| Rattus norvegicus  BAC CH230-221M14 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 222524

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 80     gcaccacagggaagagggctgaat 103
              ||||||||||| ||||||||||||
Sbjct: 120255 gcaccacagggcagagggctgaat 120232
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>emb|BX005315.7| Zebrafish DNA sequence from clone DKEY-79E6, complete sequence
          Length = 130903

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 22   tttattattaccatattatt 41
            ||||||||||||||||||||
Sbjct: 8611 tttattattaccatattatt 8630
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>dbj|AB201231.1| Musculista senhousia gene for 18S ribosomal RNA, partial sequence
          Length = 1740

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 tcgcccttggtgctcttgac 204
           ||||||||||||||||||||
Sbjct: 670 tcgcccttggtgctcttgac 689
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 293     acctcgtcacccttctcgtc 312
               ||||||||||||||||||||
Sbjct: 6206790 acctcgtcacccttctcgtc 6206809
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>gb|AF124207.1|AF124207 Musculus senhousei 18S ribosomal RNA gene, partial sequence
          Length = 1778

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 tcgcccttggtgctcttgac 204
           ||||||||||||||||||||
Sbjct: 687 tcgcccttggtgctcttgac 706
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>gb|AF124206.1|AF124206 Musculus discors 18S ribosomal RNA gene, partial sequence
          Length = 1782

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 tcgcccttggtgctcttgac 204
           ||||||||||||||||||||
Sbjct: 696 tcgcccttggtgctcttgac 715
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>gb|L33448.1|MSLSRRNAA Mytilus edulis 18S small subunit ribosomal RNA gene, complete
           sequence
          Length = 1827

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 tcgcccttggtgctcttgac 204
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736
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>gb|L33449.1|MSLSRRNAB Mytilus californianus 18S small subunit ribosomal RNA gene,
           complete sequence
          Length = 1825

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 tcgcccttggtgctcttgac 204
           ||||||||||||||||||||
Sbjct: 715 tcgcccttggtgctcttgac 734
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>gb|L33451.1|MSLSRRNAC Mytilus galloprovincialis isolate Morgat, Bay of Douarnenez, West
           Brittany, France 18S small subunit ribosomal RNA gene,
           complete sequence
          Length = 1826

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 tcgcccttggtgctcttgac 204
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
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>gb|L33453.1|MSLSRRNAE Mytilus trossulus strain Pacific strain 1 18S small subunit
           ribosomal RNA gene, complete sequence
          Length = 1827

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 tcgcccttggtgctcttgac 204
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736
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>gb|L33454.1|MSLSRRNAF Mytilus trossulus strain Pacific strain 2 18S small subunit
           ribosomal RNA gene, complete sequence
          Length = 1827

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 tcgcccttggtgctcttgac 204
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736
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>gb|L33455.1|MSLSRRNAG Mytilus trossulus strain Pacific strain 3 18S small subunit
           ribosomal RNA gene, complete sequence
          Length = 1826

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 tcgcccttggtgctcttgac 204
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
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>emb|AL929222.6| Zebrafish DNA sequence from clone DKEY-31N5, complete sequence
          Length = 212599

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 204    cccacttggccttgatcctc 223
              ||||||||||||||||||||
Sbjct: 203503 cccacttggccttgatcctc 203484
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>emb|X78814.1|NPPSY N.pseudonarcissus mRNA for phytoene synthase
          Length = 1548

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 394 ttccttcaaccatgtccatg 413
           ||||||||||||||||||||
Sbjct: 781 ttccttcaaccatgtccatg 762
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>dbj|AP001561.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-732G1, complete
              sequences
          Length = 195800

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     accagcaccacagggaagag 95
              ||||||||||||||||||||
Sbjct: 165694 accagcaccacagggaagag 165675
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>gb|DQ310715.1| Mytella strigata 18S ribosomal RNA gene, partial sequence
          Length = 415

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 tcgcccttggtgctcttgac 204
           ||||||||||||||||||||
Sbjct: 125 tcgcccttggtgctcttgac 144
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>emb|X90960.1|AN18SRRNA A.noae 18S ribosomal RNA gene
          Length = 1782

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 tcgcccttggtgctcttgac 204
           ||||||||||||||||||||
Sbjct: 712 tcgcccttggtgctcttgac 731
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>emb|X91403.1|AGEL18S A.gelatinosum 18S ribosomal RNA gene
          Length = 1813

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 tcgcccttggtgctcttgac 204
           ||||||||||||||||||||
Sbjct: 714 tcgcccttggtgctcttgac 733
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>gb|L24490.1|MSLMRNAB Mytilus trossulus 18S ribosomal RNA (18S rRNA)
          Length = 1826

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 tcgcccttggtgctcttgac 204
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
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>gb|L24489.1|MSLMRNAA Mytilus edulis 18S ribosomal RNA (18SrRNA)
          Length = 1826

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 tcgcccttggtgctcttgac 204
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,534,557
Number of Sequences: 3902068
Number of extensions: 3534557
Number of successful extensions: 63835
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63655
Number of HSP's gapped (non-prelim): 180
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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