>R1AB_BSCR3 (Q3I5J6) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7071

 Score = 28.5 bits (62), Expect = 5.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 16   ITGSC*SARYNIDHDCTQLIVIH 84
            + GSC S  +NID+DC     +H
Sbjct: 3379 LNGSCGSVGFNIDYDCVSFCYMH 3401

>R1AB_CVHSA (P59641) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7073

 Score = 28.5 bits (62), Expect = 5.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 16   ITGSC*SARYNIDHDCTQLIVIH 84
            + GSC S  +NID+DC     +H
Sbjct: 3381 LNGSCGSVGFNIDYDCVSFCYMH 3403


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,733,578
Number of Sequences: 219361
Number of extensions: 127062
Number of successful extensions: 346
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 80,573,946
effective HSP length: 7
effective length of database: 79,038,419
effective search space used: 1896922056
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)