ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_502081.1| Yarrowia lipolytica CLIB122, YALI0C21219g predi... 38 4.1
2emb|AL773562.15| Pig DNA sequence from clone XX-649D6, complete ... 38 4.1
3emb|AL512585.12| Mouse DNA sequence from clone RP23-236A12 on ch... 38 4.1
4emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 38 4.1

>ref|XM_502081.1| Yarrowia lipolytica CLIB122, YALI0C21219g predicted mRNA
          Length = 399

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 44  acaacattgaccatgactg 62
           |||||||||||||||||||
Sbjct: 104 acaacattgaccatgactg 86



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>emb|AL773562.15| Pig DNA sequence from clone XX-649D6, complete sequence
          Length = 127265

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 10    cactccatcacgggctcct 28
             |||||||||||||||||||
Sbjct: 71256 cactccatcacgggctcct 71274



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>emb|AL512585.12| Mouse DNA sequence from clone RP23-236A12 on chromosome 4, complete
              sequence
          Length = 217400

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 46     aacattgaccatgactgta 64
              |||||||||||||||||||
Sbjct: 103057 aacattgaccatgactgta 103075



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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 44      acaacattgaccatgactg 62
               |||||||||||||||||||
Sbjct: 2840699 acaacattgaccatgactg 2840681


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 677,340
Number of Sequences: 3902068
Number of extensions: 677340
Number of successful extensions: 40029
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40015
Number of HSP's gapped (non-prelim): 14
length of query: 95
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 74
effective length of database: 17,151,101,840
effective search space: 1269181536160
effective search space used: 1269181536160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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