ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CT009519.4| Mouse DNA sequence from clone RP23-145L1 on chro... 42 1.1
2dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 42 1.1
3gb|AC093353.11| Mus musculus chromosome 10, clone RP23-19C22, co... 40 4.5
4gb|AC124585.3| Mus musculus BAC clone RP23-130P17 from chromosom... 40 4.5
5gb|AC013483.7|ATAC013483 Arabidopsis thaliana chromosome III BAC... 40 4.5
6emb|AL450427.11| Human DNA sequence from clone RP11-372H19 on ch... 40 4.5
7gb|AC007849.24| Homo sapiens 3 BAC RP11-3K16 (Roswell Park Cance... 40 4.5
8gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, com... 40 4.5
9dbj|AB016876.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 4.5
10gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 40 4.5

>emb|CT009519.4| Mouse DNA sequence from clone RP23-145L1 on chromosome 14, complete
             sequence
          Length = 216678

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 213   tgatgaaccaccatttttacc 233
             |||||||||||||||||||||
Sbjct: 96669 tgatgaaccaccatttttacc 96649



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>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
          Length = 2324132

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 72      ctggcaagagatatattcctttgaa 96
               |||||||||||| ||||||||||||
Sbjct: 1511287 ctggcaagagatgtattcctttgaa 1511263



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>gb|AC093353.11| Mus musculus chromosome 10, clone RP23-19C22, complete sequence
          Length = 188921

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    gtgaagtcacaatacaatct 33
             ||||||||||||||||||||
Sbjct: 81116 gtgaagtcacaatacaatct 81097



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>gb|AC124585.3| Mus musculus BAC clone RP23-130P17 from chromosome 10, complete sequence
          Length = 198030

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     gtgaagtcacaatacaatct 33
              ||||||||||||||||||||
Sbjct: 193926 gtgaagtcacaatacaatct 193907



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>gb|AC013483.7|ATAC013483 Arabidopsis thaliana chromosome III BAC F17A17 genomic sequence,
             complete sequence
          Length = 121054

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   aatacaatctaacaaactca 163
             ||||||||||||||||||||
Sbjct: 55138 aatacaatctaacaaactca 55119



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>emb|AL450427.11| Human DNA sequence from clone RP11-372H19 on chromosome 6, complete
             sequence
          Length = 68843

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 71    tctggcaagagatatattcctttg 94
             ||||||| ||||||||||||||||
Sbjct: 26060 tctggcaggagatatattcctttg 26083



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>gb|AC007849.24| Homo sapiens 3 BAC RP11-3K16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 199835

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    ctttgaattgtctttgtggc 109
             ||||||||||||||||||||
Sbjct: 59910 ctttgaattgtctttgtggc 59929



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>gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, complete sequence
          Length = 174210

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 230    tacctgggcagttctaccat 249
              ||||||||||||||||||||
Sbjct: 100742 tacctgggcagttctaccat 100761



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>dbj|AB016876.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21
          Length = 44499

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   tgacaatacaatctaacaaa 159
             ||||||||||||||||||||
Sbjct: 42295 tgacaatacaatctaacaaa 42314



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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 210     ccctgatgaaccaccatttt 229
               ||||||||||||||||||||
Sbjct: 1799036 ccctgatgaaccaccatttt 1799017


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,714,606
Number of Sequences: 3902068
Number of extensions: 2714606
Number of successful extensions: 46855
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46828
Number of HSP's gapped (non-prelim): 27
length of query: 342
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 320
effective length of database: 17,147,199,772
effective search space: 5487103927040
effective search space used: 5487103927040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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