ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04e11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK105040.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 5e-13
2gb|AY109409.1| Zea mays CL5133_1 mRNA sequence 70 7e-09
3dbj|AK099955.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
5dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
6dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
8dbj|AP006052.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
9dbj|AP003830.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
10gb|BT017089.1| Zea mays clone EL01N0361B10.c mRNA sequence 42 1.6
11dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 42 1.6
12gb|AC016705.4|AC016705 Homo sapiens BAC clone RP11-210M15 from 1... 42 1.6
13gb|DQ333812.1| Pachyhynobius shangchengensis mitochondrion, comp... 40 6.2
14gb|AC129598.4| Mus musculus BAC clone RP23-283O5 from chromosome... 40 6.2
15gb|AC107756.9| Mus musculus chromosome 18, clone RP23-214K19, co... 40 6.2
16gb|AC142223.10| Medicago truncatula clone mth2-5e21, complete se... 40 6.2
17gb|AC119417.17| Medicago truncatula clone mth1-6m23, complete se... 40 6.2
18emb|AL590490.11| Human DNA sequence from clone RP11-177F11 on ch... 40 6.2
19emb|Y18134.1|SAC18134 Squalus acanthia complete mitochondrial ge... 40 6.2
20emb|CR762439.7| Zebrafish DNA sequence from clone DKEY-261I20 in... 40 6.2
21gb|AC097524.2| Homo sapiens BAC clone RP11-604B8 from 4, complet... 40 6.2
22gb|AC003036.1|AC003036 Homo sapiens Xp22 PAC RPCI1-108M6 (Roswel... 40 6.2
23gb|AC103564.5| Homo sapiens BAC clone RP11-788A1 from 2, complet... 40 6.2
24gb|AC145543.3| Homo sapiens chromosome UNKNOWN clone RP11-1278L2... 40 6.2
25gb|AC093724.3| Homo sapiens BAC clone RP11-1L5 from 2, complete ... 40 6.2
26gb|AF127936.2|AF127936 Homo sapiens chromosome 21 clone PAC 153I... 40 6.2
27dbj|BS000011.1| Pan troglodytes chromosome 22 clone:RP43-017I17,... 40 6.2
28emb|AL163207.2|HS21C007 Homo sapiens chromosome 21 segment HS21C007 40 6.2
29emb|AL749540.1|CNS08C9Q Human chromosome 14 DNA sequence Partial... 40 6.2
30gb|AC157955.2| Gallus gallus BAC clone TAM31-4B17 from chromosom... 40 6.2
31gb|AC160642.2| Gallus gallus BAC clone CH261-121M12 from chromos... 40 6.2
32dbj|AP000522.1| Homo sapiens genomic DNA, chromosome 22q11.2, Ca... 40 6.2 
>dbj|AK105040.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-E07, full
            insert sequence
          Length = 2278

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 64/70 (91%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                        
Query: 391  caggttgctgttccact-atccactattggtcaggagtcagcaacttgctcaactacagc 449
            ||||||||||| || || || |||||||||||||||||||  ||||||||||||||||||
Sbjct: 1965 caggttgctgtcccgctgattcactattggtcaggagtcaataacttgctcaactacagc 1906

                      
Query: 450  ttttatgctg 459
            ||||||||||
Sbjct: 1905 ttttatgctg 1896
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>gb|AY109409.1| Zea mays CL5133_1 mRNA sequence
          Length = 1029

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 425 agtcagcaacttgctcaactacagcttttatgctg 459
           |||||||||||||||||||||||||||||||||||
Sbjct: 465 agtcagcaacttgctcaactacagcttttatgctg 499
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>dbj|AK099955.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124K18, full
            insert sequence
          Length = 2107

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 422  aggagtcagcaacttgctcaactacagcttttatgctg 459
            ||||||||  ||||||||||||||||||||||||||||
Sbjct: 1898 aggagtcaataacttgctcaactacagcttttatgctg 1861
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                          
Query: 433     acttgctcaactacagcttttatgctg 459
               |||||||||||||||||||||||||||
Sbjct: 6131606 acttgctcaactacagcttttatgctg 6131632



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                         
Query: 433     acttgctcaactacagcttttatgct 458
               ||||||||||||||||||||||||||
Sbjct: 6119068 acttgctcaactacagcttttatgct 6119093



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Plus

                                                       
Query: 391     caggttgctgttccact-atccactattggtcaggagtca 429
               ||||||||||| || || || |||||||||||||||||||
Sbjct: 6131242 caggttgctgtcccgctgattcactattggtcaggagtca 6131281



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Plus

                                                       
Query: 391     caggttgctgttccact-atccactattggtcaggagtca 429
               ||||||||||| || || || |||||||||||||||||||
Sbjct: 6118716 caggttgctgtcccgctgattcactattggtcaggagtca 6118755
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>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1006_A02
          Length = 175153

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                        
Query: 433   acttgctcaactacagcttttatgctg 459
             |||||||||||||||||||||||||||
Sbjct: 97088 acttgctcaactacagcttttatgctg 97114



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 433   acttgctcaactacagcttttatgct 458
             ||||||||||||||||||||||||||
Sbjct: 84550 acttgctcaactacagcttttatgct 84575



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Plus

                                                     
Query: 391   caggttgctgttccact-atccactattggtcaggagtca 429
             ||||||||||| || || || |||||||||||||||||||
Sbjct: 96724 caggttgctgtcccgctgattcactattggtcaggagtca 96763



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Plus

                                                     
Query: 391   caggttgctgttccact-atccactattggtcaggagtca 429
             ||||||||||| || || || |||||||||||||||||||
Sbjct: 84198 caggttgctgtcccgctgattcactattggtcaggagtca 84237
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>dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1003_F05
          Length = 147472

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                        
Query: 433    acttgctcaactacagcttttatgct 458
              ||||||||||||||||||||||||||
Sbjct: 139907 acttgctcaactacagcttttatgct 139932



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Plus

                                                      
Query: 391    caggttgctgttccact-atccactattggtcaggagtca 429
              ||||||||||| || || || |||||||||||||||||||
Sbjct: 139555 caggttgctgtcccgctgattcactattggtcaggagtca 139594
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 159      aaatccatctccaaacaaacag 180
                ||||||||||||||||||||||
Sbjct: 14236786 aaatccatctccaaacaaacag 14236765



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 159      aaatccatctccaaacaaacag 180
                ||||||||||||||||||||||
Sbjct: 14120143 aaatccatctccaaacaaacag 14120122
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>dbj|AP006052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0067K15
          Length = 160162

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 159    aaatccatctccaaacaaacag 180
              ||||||||||||||||||||||
Sbjct: 121667 aaatccatctccaaacaaacag 121646



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 159  aaatccatctccaaacaaacag 180
            ||||||||||||||||||||||
Sbjct: 5024 aaatccatctccaaacaaacag 5003
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>dbj|AP003830.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1423_A11
          Length = 98377

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 159   aaatccatctccaaacaaacag 180
             ||||||||||||||||||||||
Sbjct: 96102 aaatccatctccaaacaaacag 96081
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>gb|BT017089.1| Zea mays clone EL01N0361B10.c mRNA sequence
          Length = 999

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 408 atccactattggtcaggagtcagca 432
           ||||||||||| |||||||||||||
Sbjct: 546 atccactattgctcaggagtcagca 522



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 292 ggataagccaatcctagatcacat 315
           |||||||||||||||||| |||||
Sbjct: 669 ggataagccaatcctagagcacat 646
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>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 221    ttgaaatgaatcgcaaaattt 241
              |||||||||||||||||||||
Sbjct: 755746 ttgaaatgaatcgcaaaattt 755766
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>gb|AC016705.4|AC016705 Homo sapiens BAC clone RP11-210M15 from 15, complete sequence
          Length = 177964

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 178   cagcctcttacaaccctgtga 198
             |||||||||||||||||||||
Sbjct: 45462 cagcctcttacaaccctgtga 45482
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>gb|DQ333812.1| Pachyhynobius shangchengensis mitochondrion, complete genome
          Length = 16394

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 252  gaactaaagtgctaattaaa 271
            ||||||||||||||||||||
Sbjct: 7138 gaactaaagtgctaattaaa 7119
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>gb|AC129598.4| Mus musculus BAC clone RP23-283O5 from chromosome 18, complete sequence
          Length = 213381

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    tgtacttagtgtaacatata 136
              ||||||||||||||||||||
Sbjct: 160590 tgtacttagtgtaacatata 160609
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>gb|AC107756.9| Mus musculus chromosome 18, clone RP23-214K19, complete sequence
          Length = 216911

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    tgtacttagtgtaacatata 136
              ||||||||||||||||||||
Sbjct: 139505 tgtacttagtgtaacatata 139486
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>gb|AC142223.10| Medicago truncatula clone mth2-5e21, complete sequence
          Length = 122763

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 235   aaaattttctataacatgaactaaagtg 262
             ||||| |||||||||||| |||||||||
Sbjct: 41272 aaaatattctataacatggactaaagtg 41299
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>gb|AC119417.17| Medicago truncatula clone mth1-6m23, complete sequence
          Length = 110254

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 235   aaaattttctataacatgaactaaagtg 262
             ||||| |||||||||||| |||||||||
Sbjct: 77868 aaaatattctataacatggactaaagtg 77841
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>emb|AL590490.11| Human DNA sequence from clone RP11-177F11 on chromosome 1 Contains
            part of the FMN2 gene for formin 2 and a novel gene,
            complete sequence
          Length = 51770

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 179  agcctcttacaaccctgtga 198
            ||||||||||||||||||||
Sbjct: 4781 agcctcttacaaccctgtga 4762
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>emb|Y18134.1|SAC18134 Squalus acanthia complete mitochondrial genome
          Length = 16738

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 252  gaactaaagtgctaattaaa 271
            ||||||||||||||||||||
Sbjct: 7290 gaactaaagtgctaattaaa 7271
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>emb|CR762439.7| Zebrafish DNA sequence from clone DKEY-261I20 in linkage group 13,
              complete sequence
          Length = 136285

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    ccaaacaaaatccatctcca 171
              ||||||||||||||||||||
Sbjct: 117439 ccaaacaaaatccatctcca 117420
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>gb|AC097524.2| Homo sapiens BAC clone RP11-604B8 from 4, complete sequence
          Length = 113613

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   ttctataacatgaactaaag 260
             ||||||||||||||||||||
Sbjct: 14830 ttctataacatgaactaaag 14811
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>gb|AC003036.1|AC003036 Homo sapiens Xp22 PAC RPCI1-108M6 (Roswell Park Cancer Center PAC
             library) complete sequence
          Length = 123203

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   accaccaaacaaaatccatc 167
             ||||||||||||||||||||
Sbjct: 17945 accaccaaacaaaatccatc 17964
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>gb|AC103564.5| Homo sapiens BAC clone RP11-788A1 from 2, complete sequence
          Length = 106117

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   atgtacttagtgtaacatat 135
             ||||||||||||||||||||
Sbjct: 11126 atgtacttagtgtaacatat 11107
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>gb|AC145543.3| Homo sapiens chromosome UNKNOWN clone RP11-1278L23, complete sequence
          Length = 221027

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   atgtacttagtgtaacatat 135
             ||||||||||||||||||||
Sbjct: 11805 atgtacttagtgtaacatat 11786
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>gb|AC093724.3| Homo sapiens BAC clone RP11-1L5 from 2, complete sequence
          Length = 161617

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   atgtacttagtgtaacatat 135
             ||||||||||||||||||||
Sbjct: 92468 atgtacttagtgtaacatat 92449
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>gb|AF127936.2|AF127936 Homo sapiens chromosome 21 clone PAC 153I22 map21q11.2, complete
             sequence
          Length = 149684

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 365   aacctttacaaactgaacct 384
             ||||||||||||||||||||
Sbjct: 35930 aacctttacaaactgaacct 35949
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>dbj|BS000011.1| Pan troglodytes chromosome 22 clone:RP43-017I17, map 22, complete
             sequences
          Length = 191345

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 365   aacctttacaaactgaacct 384
             ||||||||||||||||||||
Sbjct: 96572 aacctttacaaactgaacct 96591
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>emb|AL163207.2|HS21C007 Homo sapiens chromosome 21 segment HS21C007
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 365   aacctttacaaactgaacct 384
             ||||||||||||||||||||
Sbjct: 72095 aacctttacaaactgaacct 72114
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>emb|AL749540.1|CNS08C9Q Human chromosome 14 DNA sequence Partial sequence from BAC R-183K10 of
             library RPCI-11 from chromosome 14 of Homo sapiens
             (Human), complete sequence
          Length = 96308

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   atgtacttagtgtaacatat 135
             ||||||||||||||||||||
Sbjct: 69891 atgtacttagtgtaacatat 69872
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>gb|AC157955.2| Gallus gallus BAC clone TAM31-4B17 from chromosome unknown, complete
              sequence
          Length = 181590

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 237    aattttctataacatgaact 256
              ||||||||||||||||||||
Sbjct: 172862 aattttctataacatgaact 172881
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>gb|AC160642.2| Gallus gallus BAC clone CH261-121M12 from chromosome unknown, complete
             sequence
          Length = 200333

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   aattttctataacatgaact 256
             ||||||||||||||||||||
Sbjct: 65937 aattttctataacatgaact 65956
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>dbj|AP000522.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region,
             clone:c4G1
          Length = 37693

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   atgtacttagtgtaacatat 135
             ||||||||||||||||||||
Sbjct: 12392 atgtacttagtgtaacatat 12411


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,968,714
Number of Sequences: 3902068
Number of extensions: 3968714
Number of successful extensions: 73683
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73528
Number of HSP's gapped (non-prelim): 155
length of query: 459
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 437
effective length of database: 17,147,199,772
effective search space: 7493326300364
effective search space used: 7493326300364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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