Clone Name | rbastl04e06 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_187173.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2688 Score = 73.8 bits (37), Expect = 4e-10 Identities = 46/49 (93%) Strand = Plus / Minus Query: 399 gcctgttttaaggagcttttaagatgcatctcagctgacaataattctc 447 ||||||||||||||||||||||| |||||||||||||| ||||| |||| Sbjct: 2606 gcctgttttaaggagcttttaaggtgcatctcagctgaaaataactctc 2558
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 400 cctgttttaaggagcttttaagatgcatctcagctgacaataattctc 447 |||||||||||||||||||||| |||||||||||||| ||||| |||| Sbjct: 15716671 cctgttttaaggagcttttaaggtgcatctcagctgaaaataactctc 15716718
>dbj|AP005752.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0075N02 Length = 186945 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 400 cctgttttaaggagcttttaagatgcatctcagctgacaataattctc 447 |||||||||||||||||||||| |||||||||||||| ||||| |||| Sbjct: 114528 cctgttttaaggagcttttaaggtgcatctcagctgaaaataactctc 114575
>gb|AC163498.3| Mus musculus chromosome 1, clone RP23-86J11, complete sequence Length = 192061 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 50 ttcccaaatacagtctgggatt 71 |||||||||||||||||||||| Sbjct: 79433 ttcccaaatacagtctgggatt 79454
>gb|AC025116.14| Mus musculus chromosome 1, clone RP23-124O19, complete sequence Length = 233298 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 50 ttcccaaatacagtctgggatt 71 |||||||||||||||||||||| Sbjct: 53201 ttcccaaatacagtctgggatt 53180
>gb|AC146522.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0039A07 map near 50283S, complete sequence Length = 158158 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 acatgaataacagaacaagag 169 ||||||||||||||||||||| Sbjct: 28623 acatgaataacagaacaagag 28643
>emb|BX936312.12| Zebrafish DNA sequence from clone DKEY-204O5 in linkage group 7, complete sequence Length = 158510 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 131 acattcagcaaacgaccaacatgaa 155 ||||||||||||| ||||||||||| Sbjct: 105223 acattcagcaaactaccaacatgaa 105199 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 131 acattcagcaaacgaccaacatgaa 155 ||||||||||||| ||||||||||| Sbjct: 104779 acattcagcaaactaccaacatgaa 104755
>gb|AC102561.4| Mus musculus chromosome 7, clone RP23-201O19, complete sequence Length = 195549 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 aggcaatagtacaaatacttt 51 ||||||||||||||||||||| Sbjct: 125157 aggcaatagtacaaatacttt 125177
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 acatgaataacagaacaagag 169 ||||||||||||||||||||| Sbjct: 14283011 acatgaataacagaacaagag 14283031
>emb|AL935276.16| Zebrafish DNA sequence from clone CH211-273J2, complete sequence Length = 164481 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 131 acattcagcaaacgaccaacatgaa 155 ||||||||||||| ||||||||||| Sbjct: 49711 acattcagcaaactaccaacatgaa 49687 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 131 acattcagcaaacgaccaacatgaa 155 ||||||||||||| ||||||||||| Sbjct: 49271 acattcagcaaactaccaacatgaa 49247
>emb|BX511140.4| Zebrafish DNA sequence from clone DKEY-264G21 in linkage group 20, complete sequence Length = 166153 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 aataacagaacaagagtaaat 174 ||||||||||||||||||||| Sbjct: 90984 aataacagaacaagagtaaat 90964
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 acatgaataacagaacaagag 169 ||||||||||||||||||||| Sbjct: 14365013 acatgaataacagaacaagag 14365033
>gb|AC145944.3| Gallus gallus chromosome UNK clone CH261-22N7, complete sequence Length = 215147 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 taacagaacaagagtaaataaagg 179 |||| ||||||||||||||||||| Sbjct: 76240 taacggaacaagagtaaataaagg 76263
>gb|AC110269.8| Mus musculus chromosome 1, clone RP23-322P13, complete sequence Length = 251855 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 tttcattcaaacagaggcaa 36 |||||||||||||||||||| Sbjct: 100346 tttcattcaaacagaggcaa 100365
>emb|AL445465.10| Human DNA sequence from clone RP11-415D17 on chromosome 6 Contains two novel genes, part of a novel gene, a ubiquitin-conjugating enzyme E2 family pseudogene and a CpG island, complete sequence Length = 126388 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 agtcattaagtgatttatac 374 |||||||||||||||||||| Sbjct: 1029 agtcattaagtgatttatac 1048
>dbj|AB192509.2| Sus scrofa genomic DNA, chromosome 7, BAC clone: L139G16, complete sequence Length = 157870 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 attggtcaaggcagtcatta 362 |||||||||||||||||||| Sbjct: 113352 attggtcaaggcagtcatta 113333
>gb|AC099036.1| Drosophila melanogaster, chromosome 2R, region 59C-59D, BAC clone BACR34K16, complete sequence Length = 180361 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 aagtgatttatactcctccg 381 |||||||||||||||||||| Sbjct: 32383 aagtgatttatactcctccg 32402
>gb|AC021105.13| Homo sapiens BAC clone RP11-163O17 from 4, complete sequence Length = 187360 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 gaccaacatgaataacagaa 163 |||||||||||||||||||| Sbjct: 69584 gaccaacatgaataacagaa 69565
>gb|AC008304.3|AC008304 Drosophila melanogaster, chromosome 2R, region 59D2-59D3, BAC clone BACR04G19, complete sequence Length = 181955 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 aagtgatttatactcctccg 381 |||||||||||||||||||| Sbjct: 11941 aagtgatttatactcctccg 11922
>emb|BX927177.12| Zebrafish DNA sequence from clone DKEY-78D16 in linkage group 19, complete sequence Length = 154891 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 ggcaatagtacaaatacttt 51 |||||||||||||||||||| Sbjct: 94106 ggcaatagtacaaatacttt 94125
>gb|AC006935.2|AC006935 Drosophila melanogaster, chromosome 2R, region 59D2-59D3, P1 clone DS06017, complete sequence Length = 85966 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 aagtgatttatactcctccg 381 |||||||||||||||||||| Sbjct: 188 aagtgatttatactcctccg 207
>gb|AE003460.2| Drosophila melanogaster chromosome 2R, section 68 of 73 of the complete sequence Length = 299331 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 aagtgatttatactcctccg 381 |||||||||||||||||||| Sbjct: 64418 aagtgatttatactcctccg 64399
>emb|AL773525.5| Mouse DNA sequence from clone RP23-169L4 on chromosome 2, complete sequence Length = 188772 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 tgtcatttataaagggtctg 263 |||||||||||||||||||| Sbjct: 111132 tgtcatttataaagggtctg 111151
>gb|M10594.1|SOYNOD35G Soybean nodulin-35 (N-35) gene encoding a subunit of uricase II, complete cds Length = 4783 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 aacagaggcaatagtacaaa 45 |||||||||||||||||||| Sbjct: 2445 aacagaggcaatagtacaaa 2464
>dbj|AB002809.1| Glycine max mRNA for nodulin 35, complete cds Length = 1220 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 aacagaggcaatagtacaaa 45 |||||||||||||||||||| Sbjct: 448 aacagaggcaatagtacaaa 467 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,736,305 Number of Sequences: 3902068 Number of extensions: 4736305 Number of successful extensions: 73659 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73500 Number of HSP's gapped (non-prelim): 159 length of query: 454 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 432 effective length of database: 17,147,199,772 effective search space: 7407590301504 effective search space used: 7407590301504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)