ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_187173.1| Oryza sativa (japonica cultivar-group), mRNA 74 4e-10
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
3dbj|AP005752.5| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
4gb|AC163498.3| Mus musculus chromosome 1, clone RP23-86J11, comp... 44 0.39
5gb|AC025116.14| Mus musculus chromosome 1, clone RP23-124O19, co... 44 0.39
6gb|AC146522.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
7emb|BX936312.12| Zebrafish DNA sequence from clone DKEY-204O5 in... 42 1.5
8gb|AC102561.4| Mus musculus chromosome 7, clone RP23-201O19, com... 42 1.5
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
10emb|AL935276.16| Zebrafish DNA sequence from clone CH211-273J2, ... 42 1.5
11emb|BX511140.4| Zebrafish DNA sequence from clone DKEY-264G21 in... 42 1.5
12gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
13gb|AC145944.3| Gallus gallus chromosome UNK clone CH261-22N7, co... 40 6.1
14gb|AC110269.8| Mus musculus chromosome 1, clone RP23-322P13, com... 40 6.1
15emb|AL445465.10| Human DNA sequence from clone RP11-415D17 on ch... 40 6.1
16dbj|AB192509.2| Sus scrofa genomic DNA, chromosome 7, BAC clone:... 40 6.1
17gb|AC099036.1| Drosophila melanogaster, chromosome 2R, region 59... 40 6.1
18gb|AC021105.13| Homo sapiens BAC clone RP11-163O17 from 4, compl... 40 6.1
19gb|AC008304.3|AC008304 Drosophila melanogaster, chromosome 2R, r... 40 6.1
20emb|BX927177.12| Zebrafish DNA sequence from clone DKEY-78D16 in... 40 6.1
21gb|AC006935.2|AC006935 Drosophila melanogaster, chromosome 2R, r... 40 6.1
22gb|AE003460.2| Drosophila melanogaster chromosome 2R, section 68... 40 6.1
23emb|AL773525.5| Mouse DNA sequence from clone RP23-169L4 on chro... 40 6.1
24gb|M10594.1|SOYNOD35G Soybean nodulin-35 (N-35) gene encoding a ... 40 6.1
25dbj|AB002809.1| Glycine max mRNA for nodulin 35, complete cds 40 6.1

>ref|NM_187173.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2688

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                             
Query: 399  gcctgttttaaggagcttttaagatgcatctcagctgacaataattctc 447
            ||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 2606 gcctgttttaaggagcttttaaggtgcatctcagctgaaaataactctc 2558



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                                
Query: 400      cctgttttaaggagcttttaagatgcatctcagctgacaataattctc 447
                |||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 15716671 cctgttttaaggagcttttaaggtgcatctcagctgaaaataactctc 15716718



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>dbj|AP005752.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0075N02
          Length = 186945

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                              
Query: 400    cctgttttaaggagcttttaagatgcatctcagctgacaataattctc 447
              |||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 114528 cctgttttaaggagcttttaaggtgcatctcagctgaaaataactctc 114575



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>gb|AC163498.3| Mus musculus chromosome 1, clone RP23-86J11, complete sequence
          Length = 192061

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 50    ttcccaaatacagtctgggatt 71
             ||||||||||||||||||||||
Sbjct: 79433 ttcccaaatacagtctgggatt 79454



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>gb|AC025116.14| Mus musculus chromosome 1, clone RP23-124O19, complete sequence
          Length = 233298

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 50    ttcccaaatacagtctgggatt 71
             ||||||||||||||||||||||
Sbjct: 53201 ttcccaaatacagtctgggatt 53180



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>gb|AC146522.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0039A07 map near 50283S, complete sequence
          Length = 158158

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 149   acatgaataacagaacaagag 169
             |||||||||||||||||||||
Sbjct: 28623 acatgaataacagaacaagag 28643



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>emb|BX936312.12| Zebrafish DNA sequence from clone DKEY-204O5 in linkage group 7, complete
              sequence
          Length = 158510

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 131    acattcagcaaacgaccaacatgaa 155
              ||||||||||||| |||||||||||
Sbjct: 105223 acattcagcaaactaccaacatgaa 105199



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 131    acattcagcaaacgaccaacatgaa 155
              ||||||||||||| |||||||||||
Sbjct: 104779 acattcagcaaactaccaacatgaa 104755



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>gb|AC102561.4| Mus musculus chromosome 7, clone RP23-201O19, complete sequence
          Length = 195549

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 31     aggcaatagtacaaatacttt 51
              |||||||||||||||||||||
Sbjct: 125157 aggcaatagtacaaatacttt 125177



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 149      acatgaataacagaacaagag 169
                |||||||||||||||||||||
Sbjct: 14283011 acatgaataacagaacaagag 14283031



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>emb|AL935276.16| Zebrafish DNA sequence from clone CH211-273J2, complete sequence
          Length = 164481

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 131   acattcagcaaacgaccaacatgaa 155
             ||||||||||||| |||||||||||
Sbjct: 49711 acattcagcaaactaccaacatgaa 49687



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 131   acattcagcaaacgaccaacatgaa 155
             ||||||||||||| |||||||||||
Sbjct: 49271 acattcagcaaactaccaacatgaa 49247



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>emb|BX511140.4| Zebrafish DNA sequence from clone DKEY-264G21 in linkage group 20,
             complete sequence
          Length = 166153

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 154   aataacagaacaagagtaaat 174
             |||||||||||||||||||||
Sbjct: 90984 aataacagaacaagagtaaat 90964



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 149      acatgaataacagaacaagag 169
                |||||||||||||||||||||
Sbjct: 14365013 acatgaataacagaacaagag 14365033



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>gb|AC145944.3| Gallus gallus chromosome UNK clone CH261-22N7, complete sequence
          Length = 215147

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 156   taacagaacaagagtaaataaagg 179
             |||| |||||||||||||||||||
Sbjct: 76240 taacggaacaagagtaaataaagg 76263



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>gb|AC110269.8| Mus musculus chromosome 1, clone RP23-322P13, complete sequence
          Length = 251855

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     tttcattcaaacagaggcaa 36
              ||||||||||||||||||||
Sbjct: 100346 tttcattcaaacagaggcaa 100365



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>emb|AL445465.10| Human DNA sequence from clone RP11-415D17 on chromosome 6 Contains
            two novel genes, part of a novel gene, a
            ubiquitin-conjugating enzyme E2 family pseudogene and a
            CpG island, complete sequence
          Length = 126388

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  agtcattaagtgatttatac 374
            ||||||||||||||||||||
Sbjct: 1029 agtcattaagtgatttatac 1048



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>dbj|AB192509.2| Sus scrofa genomic DNA, chromosome 7, BAC clone: L139G16, complete
              sequence
          Length = 157870

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 343    attggtcaaggcagtcatta 362
              ||||||||||||||||||||
Sbjct: 113352 attggtcaaggcagtcatta 113333



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>gb|AC099036.1| Drosophila melanogaster, chromosome 2R, region 59C-59D, BAC clone
             BACR34K16, complete sequence
          Length = 180361

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   aagtgatttatactcctccg 381
             ||||||||||||||||||||
Sbjct: 32383 aagtgatttatactcctccg 32402



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>gb|AC021105.13| Homo sapiens BAC clone RP11-163O17 from 4, complete sequence
          Length = 187360

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   gaccaacatgaataacagaa 163
             ||||||||||||||||||||
Sbjct: 69584 gaccaacatgaataacagaa 69565



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>gb|AC008304.3|AC008304 Drosophila melanogaster, chromosome 2R, region 59D2-59D3, BAC clone
             BACR04G19, complete sequence
          Length = 181955

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   aagtgatttatactcctccg 381
             ||||||||||||||||||||
Sbjct: 11941 aagtgatttatactcctccg 11922



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>emb|BX927177.12| Zebrafish DNA sequence from clone DKEY-78D16 in linkage group 19,
             complete sequence
          Length = 154891

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    ggcaatagtacaaatacttt 51
             ||||||||||||||||||||
Sbjct: 94106 ggcaatagtacaaatacttt 94125



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>gb|AC006935.2|AC006935 Drosophila melanogaster, chromosome 2R, region 59D2-59D3, P1 clone
           DS06017, complete sequence
          Length = 85966

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 362 aagtgatttatactcctccg 381
           ||||||||||||||||||||
Sbjct: 188 aagtgatttatactcctccg 207



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>gb|AE003460.2| Drosophila melanogaster chromosome 2R, section 68 of 73 of the complete
             sequence
          Length = 299331

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   aagtgatttatactcctccg 381
             ||||||||||||||||||||
Sbjct: 64418 aagtgatttatactcctccg 64399



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>emb|AL773525.5| Mouse DNA sequence from clone RP23-169L4 on chromosome 2, complete
              sequence
          Length = 188772

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 244    tgtcatttataaagggtctg 263
              ||||||||||||||||||||
Sbjct: 111132 tgtcatttataaagggtctg 111151



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>gb|M10594.1|SOYNOD35G Soybean nodulin-35 (N-35) gene encoding a subunit of uricase II,
            complete cds
          Length = 4783

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 26   aacagaggcaatagtacaaa 45
            ||||||||||||||||||||
Sbjct: 2445 aacagaggcaatagtacaaa 2464



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>dbj|AB002809.1| Glycine max mRNA for nodulin 35, complete cds
          Length = 1220

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 26  aacagaggcaatagtacaaa 45
           ||||||||||||||||||||
Sbjct: 448 aacagaggcaatagtacaaa 467


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,736,305
Number of Sequences: 3902068
Number of extensions: 4736305
Number of successful extensions: 73659
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73500
Number of HSP's gapped (non-prelim): 159
length of query: 454
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 432
effective length of database: 17,147,199,772
effective search space: 7407590301504
effective search space used: 7407590301504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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