ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl04e03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY111352.1| Zea mays CL21401_1 mRNA sequence Length = 1282 Score = 77.8 bits (39), Expect = 2e-11 Identities = 120/147 (81%) Strand = Plus / Minus Query: 196 tcaaacgtctctagccgtgccgtgtcggcggtggcggtctccaccacctccctcttgagg 255 ||||||| ||||| ||| | |||||| ||| ||| | |||| ||||||||||||| || Sbjct: 1234 tcaaacggctctaaccgagtcgtgtcagcgctgggtgcctccgccacctccctctttagt 1175 Query: 256 atcatctccagcagaaggttcctctcaatgacttcgccgggcggatacttgtcgagtatc 315 |||||||||||||| || || || ||||| |||| ||||| || |||| || || ||| Sbjct: 1174 atcatctccagcaggagatttctttcaatagcttcaccgggaggggacttctcaaggatc 1115 Query: 316 gaccagttccttatgacccgccagatt 342 ||||||||||| |||||||||||||| Sbjct: 1114 gaccagttcctattgacccgccagatt 1088
>ref|XM_507047.1| PREDICTED Oryza sativa (japonica cultivar-group), P0643F09.17 mRNA Length = 3579 Score = 73.8 bits (37), Expect = 3e-10 Identities = 88/105 (83%) Strand = Plus / Minus Query: 234 ctccaccacctccctcttgaggatcatctccagcagaaggttcctctcaatgacttcgcc 293 ||||| |||||| ||||| || ||||| |||| ||| ||||| || ||||| ||| || Sbjct: 3331 ctccaacacctctctcttcagtatcatttccaccaggaggtttctttcaatagtttctcc 3272 Query: 294 gggcggatacttgtcgagtatcgaccagttccttatgacccgcca 338 ||| ||||||||||| || |||||||||||||||||||| ||||| Sbjct: 3271 gggtggatacttgtcaagaatcgaccagttccttatgactcgcca 3227
>ref|XM_468396.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3363 Score = 73.8 bits (37), Expect = 3e-10 Identities = 88/105 (83%) Strand = Plus / Minus Query: 234 ctccaccacctccctcttgaggatcatctccagcagaaggttcctctcaatgacttcgcc 293 ||||| |||||| ||||| || ||||| |||| ||| ||||| || ||||| ||| || Sbjct: 3099 ctccaacacctctctcttcagtatcatttccaccaggaggtttctttcaatagtttctcc 3040 Query: 294 gggcggatacttgtcgagtatcgaccagttccttatgacccgcca 338 ||| ||||||||||| || |||||||||||||||||||| ||||| Sbjct: 3039 gggtggatacttgtcaagaatcgaccagttccttatgactcgcca 2995
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 73.8 bits (37), Expect = 3e-10 Identities = 88/105 (83%) Strand = Plus / Minus Query: 234 ctccaccacctccctcttgaggatcatctccagcagaaggttcctctcaatgacttcgcc 293 ||||| |||||| ||||| || ||||| |||| ||| ||||| || ||||| ||| || Sbjct: 35014690 ctccaacacctctctcttcagtatcatttccaccaggaggtttctttcaatagtttctcc 35014631 Query: 294 gggcggatacttgtcgagtatcgaccagttccttatgacccgcca 338 ||| ||||||||||| || |||||||||||||||||||| ||||| Sbjct: 35014630 gggtggatacttgtcaagaatcgaccagttccttatgactcgcca 35014586
>dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643F09 Length = 161001 Score = 73.8 bits (37), Expect = 3e-10 Identities = 88/105 (83%) Strand = Plus / Minus Query: 234 ctccaccacctccctcttgaggatcatctccagcagaaggttcctctcaatgacttcgcc 293 ||||| |||||| ||||| || ||||| |||| ||| ||||| || ||||| ||| || Sbjct: 75031 ctccaacacctctctcttcagtatcatttccaccaggaggtttctttcaatagtttctcc 74972 Query: 294 gggcggatacttgtcgagtatcgaccagttccttatgacccgcca 338 ||| ||||||||||| || |||||||||||||||||||| ||||| Sbjct: 74971 gggtggatacttgtcaagaatcgaccagttccttatgactcgcca 74927
>dbj|AK101167.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028I16, full insert sequence Length = 3363 Score = 73.8 bits (37), Expect = 3e-10 Identities = 88/105 (83%) Strand = Plus / Minus Query: 234 ctccaccacctccctcttgaggatcatctccagcagaaggttcctctcaatgacttcgcc 293 ||||| |||||| ||||| || ||||| |||| ||| ||||| || ||||| ||| || Sbjct: 3099 ctccaacacctctctcttcagtatcatttccaccaggaggtttctttcaatagtttctcc 3040 Query: 294 gggcggatacttgtcgagtatcgaccagttccttatgacccgcca 338 ||| ||||||||||| || |||||||||||||||||||| ||||| Sbjct: 3039 gggtggatacttgtcaagaatcgaccagttccttatgactcgcca 2995
>dbj|AK100544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102M09, full insert sequence Length = 3578 Score = 73.8 bits (37), Expect = 3e-10 Identities = 88/105 (83%) Strand = Plus / Minus Query: 234 ctccaccacctccctcttgaggatcatctccagcagaaggttcctctcaatgacttcgcc 293 ||||| |||||| ||||| || ||||| |||| ||| ||||| || ||||| ||| || Sbjct: 3330 ctccaacacctctctcttcagtatcatttccaccaggaggtttctttcaatagtttctcc 3271 Query: 294 gggcggatacttgtcgagtatcgaccagttccttatgacccgcca 338 ||| ||||||||||| || |||||||||||||||||||| ||||| Sbjct: 3270 gggtggatacttgtcaagaatcgaccagttccttatgactcgcca 3226
>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome Length = 195859 Score = 48.1 bits (24), Expect = 0.019 Identities = 24/24 (100%) Strand = Plus / Plus Query: 209 gccgtgccgtgtcggcggtggcgg 232 |||||||||||||||||||||||| Sbjct: 173258 gccgtgccgtgtcggcggtggcgg 173281
>ref|XM_532665.2| PREDICTED: Canis familiaris similar to Down-regulated in metastasis protein (Key-1A6 protein) (Novel nucleolar protein 73) (NNP73) (LOC475441), mRNA Length = 8529 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 256 atcatctccagcagaaggttcctct 280 |||||||||||||| |||||||||| Sbjct: 2664 atcatctccagcagcaggttcctct 2640
>gb|AC164955.2| Mus musculus BAC clone RP24-233H9 from chromosome 9, complete sequence Length = 221907 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 gataaatagagcagtgttaca 33 ||||||||||||||||||||| Sbjct: 51658 gataaatagagcagtgttaca 51638
>gb|AC102136.6| Mus musculus chromosome 3, clone RP23-269G19, complete sequence Length = 186659 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ggggtggggggagaggcaaa 87 |||||||||||||||||||| Sbjct: 82867 ggggtggggggagaggcaaa 82848
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 cggcggtggcggtctccacc 240 |||||||||||||||||||| Sbjct: 3742364 cggcggtggcggtctccacc 3742345
>gb|U81261.1|PAU81261 Pseudomonas aeruginosa glutamate synthase large subunit (gltB) and glutamate synthase small subunit (gltD) genes, complete cds; HemE-like protein (hemE) gene, partial cds; and unknown gene Length = 7432 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 ggcggtggcggtctccacca 241 |||||||||||||||||||| Sbjct: 2429 ggcggtggcggtctccacca 2410
>gb|AC147238.3| Mus musculus BAC clone RP23-377L7 from chromosome 10, complete sequence Length = 176876 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ggggtggggggagaggcaaa 87 |||||||||||||||||||| Sbjct: 73980 ggggtggggggagaggcaaa 73961
>gb|AC158583.3| Mus musculus chromosome 3, clone RP24-318B11, complete sequence Length = 168986 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ggggtggggggagaggcaaa 87 |||||||||||||||||||| Sbjct: 100791 ggggtggggggagaggcaaa 100772
>ref|XM_386173.1| Gibberella zeae PH-1 chromosome 3 conserved hypothetical protein (FG05997.1) partial mRNA Length = 1551 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 agggcctcctcaagcaggtcctcc 165 ||||| |||||||||||||||||| Sbjct: 1274 agggcgtcctcaagcaggtcctcc 1297
>ref|NM_001354.4| Homo sapiens aldo-keto reductase family 1, member C2 (dihydrodiol dehydrogenase 2; bile acid binding protein; 3-alpha hydroxysteroid dehydrogenase, type III) (AKR1C2), transcript variant 1, mRNA Length = 1663 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ttgaggatcatctccagcag 269 |||||||||||||||||||| Sbjct: 928 ttgaggatcatctccagcag 909
>ref|NM_205845.1| Homo sapiens aldo-keto reductase family 1, member C2 (dihydrodiol dehydrogenase 2; bile acid binding protein; 3-alpha hydroxysteroid dehydrogenase, type III) (AKR1C2), transcript variant 2, mRNA Length = 1563 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ttgaggatcatctccagcag 269 |||||||||||||||||||| Sbjct: 828 ttgaggatcatctccagcag 809
>gb|AC123035.2| Mus musculus BAC clone RP24-497E22 from 10, complete sequence Length = 166009 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ggggtggggggagaggcaaa 87 |||||||||||||||||||| Sbjct: 54580 ggggtggggggagaggcaaa 54561
>emb|AL391427.9| Human DNA sequence from clone RP11-499O7 on chromosome 10 Contains the 5' end of the AKR1C2 gene for aldo-keto reductase family 1 member C2, a novel gene, the AKR1C3 gene for aldo-keto reductase family 1 member C3, two aldo-keto reductase pseudogenes and the 3' end of the gene for a novel protein similar to aldo-keto reductase, complete sequence Length = 166974 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 ttgaggatcatctccagcag 269 |||||||||||||||||||| Sbjct: 4929 ttgaggatcatctccagcag 4948
>gb|BC063574.1| Homo sapiens aldo-keto reductase family 1, member C2 (dihydrodiol dehydrogenase 2; bile acid binding protein; 3-alpha hydroxysteroid dehydrogenase, type III), transcript variant 2, mRNA (cDNA clone MGC:70847 IMAGE:3877666), complete cds Length = 1543 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ttgaggatcatctccagcag 269 |||||||||||||||||||| Sbjct: 813 ttgaggatcatctccagcag 794
>emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24, complete sequence Length = 121056 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 ccgtgccgtgtcggcggtggcggt 233 |||||||||| ||||||||||||| Sbjct: 64948 ccgtgccgtgccggcggtggcggt 64971
>gb|BC007024.1| Homo sapiens aldo-keto reductase family 1, member C2 (dihydrodiol dehydrogenase 2; bile acid binding protein; 3-alpha hydroxysteroid dehydrogenase, type III), transcript variant 1, mRNA (cDNA clone MGC:12374 IMAGE:3681970), complete cds Length = 1290 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ttgaggatcatctccagcag 269 |||||||||||||||||||| Sbjct: 555 ttgaggatcatctccagcag 536
>gb|BT008079.1| Synthetic construct Homo sapiens aldo-keto reductase family 1, member C2 (dihydrodiol dehydrogenase 2; bile acid binding protein; 3-alpha hydroxysteroid dehydrogenase, type III) mRNA, partial cds Length = 972 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ttgaggatcatctccagcag 269 |||||||||||||||||||| Sbjct: 533 ttgaggatcatctccagcag 514
>gb|BT006653.1| Homo sapiens aldo-keto reductase family 1, member C2 (dihydrodiol dehydrogenase 2; bile acid binding protein; 3-alpha hydroxysteroid dehydrogenase, type III) mRNA, complete cds Length = 972 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ttgaggatcatctccagcag 269 |||||||||||||||||||| Sbjct: 533 ttgaggatcatctccagcag 514
>dbj|AK091194.1| Homo sapiens cDNA FLJ33875 fis, clone CTONG2007007, highly similar to PROBABLE TRANS-1,2-DIHYDROBENZENE-1,2-DIOL DEHYDROGENASE (EC 1.3.1.20) Length = 2846 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ttgaggatcatctccagcag 269 |||||||||||||||||||| Sbjct: 2200 ttgaggatcatctccagcag 2181
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 ggtggcggtctccaccacct 244 |||||||||||||||||||| Sbjct: 3713678 ggtggcggtctccaccacct 3713697
>gb|S68330.1| chlordecone reductase homolog {clone HAKRd} [human, liver, mRNA, 1194 nt] Length = 1194 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ttgaggatcatctccagcag 269 |||||||||||||||||||| Sbjct: 539 ttgaggatcatctccagcag 520
>ref|XM_623509.1| PREDICTED: Apis mellifera similar to ENSANGP00000013138 (LOC551113), mRNA Length = 2774 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 tcgccgggcggatacttgtc 308 |||||||||||||||||||| Sbjct: 2365 tcgccgggcggatacttgtc 2346
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 ccgtgccgtgtcggcggtggcggt 233 |||||||||| ||||||||||||| Sbjct: 26625390 ccgtgccgtgccggcggtggcggt 26625413
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 cggcggtggcggtctccacc 240 |||||||||||||||||||| Sbjct: 18827834 cggcggtggcggtctccacc 18827815
>dbj|AB032153.2| Homo sapiens BABP gene for bile acid-binding protein, complete cds Length = 15677 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ttgaggatcatctccagcag 269 |||||||||||||||||||| Sbjct: 8352 ttgaggatcatctccagcag 8333
>gb|AE004916.1| Pseudomonas aeruginosa PAO1, section 477 of 529 of the complete genome Length = 14789 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 ggcggtggcggtctccacca 241 |||||||||||||||||||| Sbjct: 12683 ggcggtggcggtctccacca 12702
>dbj|AP004357.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1074C08 Length = 165701 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 cggcggtggcggtctccacc 240 |||||||||||||||||||| Sbjct: 224 cggcggtggcggtctccacc 205
>dbj|AP004641.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1147B04 Length = 142956 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 cggcggtggcggtctccacc 240 |||||||||||||||||||| Sbjct: 34845 cggcggtggcggtctccacc 34826
>gb|AY892483.1| Synthetic construct Homo sapiens clone FLH022886.01L aldo-keto reductase family 1 member C2 (AKR1C2) mRNA, partial cds Length = 972 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ttgaggatcatctccagcag 269 |||||||||||||||||||| Sbjct: 533 ttgaggatcatctccagcag 514
>gb|AY892482.1| Synthetic construct Homo sapiens clone FLH022885.01L aldo-keto reductase family 1 member C2 (AKR1C2) mRNA, partial cds Length = 972 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ttgaggatcatctccagcag 269 |||||||||||||||||||| Sbjct: 533 ttgaggatcatctccagcag 514
>gb|AY889996.1| Synthetic construct Homo sapiens clone FLH022890.01X aldo-keto reductase family 1 member C2 (AKR1C2) mRNA, complete cds Length = 972 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ttgaggatcatctccagcag 269 |||||||||||||||||||| Sbjct: 533 ttgaggatcatctccagcag 514
>gb|AY889995.1| Synthetic construct Homo sapiens clone FLH022889.01X aldo-keto reductase family 1 member C2 (AKR1C2) mRNA, complete cds Length = 972 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ttgaggatcatctccagcag 269 |||||||||||||||||||| Sbjct: 533 ttgaggatcatctccagcag 514
>dbj|AB209017.1| Homo sapiens mRNA for aldo-keto reductase family 1, member C2 variant protein Length = 1550 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ttgaggatcatctccagcag 269 |||||||||||||||||||| Sbjct: 600 ttgaggatcatctccagcag 581
>gb|L32592.1|HUMDIHYBIL Human dihydrodiol dehydrogenase/bile acid binding protein gene, complete cds Length = 17569 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ttgaggatcatctccagcag 269 |||||||||||||||||||| Sbjct: 8804 ttgaggatcatctccagcag 8785
>gb|M33376.1|HUMMCDR2 Human pseudo-chlordecone reductase mRNA, complete cds Length = 990 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ttgaggatcatctccagcag 269 |||||||||||||||||||| Sbjct: 488 ttgaggatcatctccagcag 469
>gb|U05598.1|HSU05598 Human dihydrodiol dehydrogenase mRNA, complete cds Length = 1219 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ttgaggatcatctccagcag 269 |||||||||||||||||||| Sbjct: 556 ttgaggatcatctccagcag 537
>dbj|AB021654.1| Homo sapiens mRNA for DD2/bile acid-binding protein/AKR1C2/3alpha-hydroxysteroid dehydrogenase type 3, complete cds Length = 972 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ttgaggatcatctccagcag 269 |||||||||||||||||||| Sbjct: 533 ttgaggatcatctccagcag 514
>dbj|AB031084.1| Homo sapiens mRNA for bile acid-binding protein, complete cds Length = 972 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ttgaggatcatctccagcag 269 |||||||||||||||||||| Sbjct: 533 ttgaggatcatctccagcag 514 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,442,090 Number of Sequences: 3902068 Number of extensions: 2442090 Number of successful extensions: 51898 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51718 Number of HSP's gapped (non-prelim): 180 length of query: 342 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 320 effective length of database: 17,147,199,772 effective search space: 5487103927040 effective search space used: 5487103927040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
