ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DEGP7_ARATH (Q8RY22) Protease Do-like 7 (EC 3.4.21.-) 95 1e-19
2YIFC_SCHPO (Q9P7S1) Hypothetical protein C23G3.12c in chromosome I 37 0.033
3YNM3_YEAST (P53920) Hypothetical 110.9 kDa protein in SPC98-TOM7... 35 0.095
4CSD_PSEPK (Q9Z408) Probable cysteine desulfurase (EC 2.8.1.7) 31 1.4
5PGK_NITEU (Q82XE8) Phosphoglycerate kinase (EC 2.7.2.3) 29 5.2
6METX_YEAST (Q04533) Putative cystathionine gamma-synthase YML082... 28 8.9

>DEGP7_ARATH (Q8RY22) Protease Do-like 7 (EC 3.4.21.-)|
          Length = 1097

 Score = 94.7 bits (234), Expect = 1e-19
 Identities = 41/55 (74%), Positives = 47/55 (85%)
 Frame = -2

Query: 458  KGLEDREFVRVKTVHLNGKPRVLTLKQDLHYWPTWELTFEPETDTWKRRTIKALQ 294
            K LE  +FVR++TVHLNGKPRVLTLKQDLHYWPTWEL F+PET  W+R  +KALQ
Sbjct: 1043 KELEHGQFVRIRTVHLNGKPRVLTLKQDLHYWPTWELRFDPETALWRRNILKALQ 1097



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>YIFC_SCHPO (Q9P7S1) Hypothetical protein C23G3.12c in chromosome I|
          Length = 996

 Score = 36.6 bits (83), Expect = 0.033
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -2

Query: 461  VKGLEDREFVRVKTVHLNGKPRVLTLKQDLHYWPTWELTFEPETDT-WK 318
            ++ ++D  +VRV T   +  P VLT+K + HY+PT +L  + + +  W+
Sbjct: 913  IRKIDDNSYVRVSTSTFDKVPVVLTIKMNKHYFPTIDLVQDAKAENGWR 961



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>YNM3_YEAST (P53920) Hypothetical 110.9 kDa protein in SPC98-TOM70 intergenic|
            region
          Length = 997

 Score = 35.0 bits (79), Expect = 0.095
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -2

Query: 467  QVVKGLEDREFVRVKTVHLNGKPRVLTLKQDLHYWPTWELTFEPETDTW 321
            +VVK + D  + +++ +  +  P  ++LK + HY+PT EL  +  T  W
Sbjct: 936  KVVKTIPDNSYCKMRLMTFDNVPFAISLKTNYHYFPTAELKRDNITHKW 984



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>CSD_PSEPK (Q9Z408) Probable cysteine desulfurase (EC 2.8.1.7)|
          Length = 401

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +1

Query: 106 QLSTGNEILMSSIELHYILVPTLTLAHRHRQHFRVPRLSMLG 231
           +L  G+EI +S++E H  L+P   LAHR   H  V  L   G
Sbjct: 106 RLEAGDEIAISALEHHANLLPWQQLAHRRNLHLVVLPLDAHG 147



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>PGK_NITEU (Q82XE8) Phosphoglycerate kinase (EC 2.7.2.3)|
          Length = 392

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = +3

Query: 267 RQNKSSHGWLQRFYCSPLPCVGLRFKSELPGRPIVKVLFQSEHPWFPVQMDGLHPNKLTV 446
           R   S+HG  +    +P+ C G+    EL    + K L Q  HP   +        KLTV
Sbjct: 147 RAEASTHGIAKY---APIACAGILLTEELDA--LTKALHQPAHPLVAIVGGSKVSTKLTV 201

Query: 447 FQSL 458
            +SL
Sbjct: 202 LESL 205



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>METX_YEAST (Q04533) Putative cystathionine gamma-synthase YML082W (EC|
           2.5.1.48) (O-succinylhomoserine (thiol)-lyase)
          Length = 649

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = -2

Query: 443 REFVRVKTVHLNGKPRVLTLKQDLHYWPTWELTFEPETDTWKR 315
           RE+VR K  H NGK R+L L                E  TWKR
Sbjct: 90  REYVRRKCAHRNGKVRILQL--------ATAKPINEEQKTWKR 124


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,547,473
Number of Sequences: 219361
Number of extensions: 1371834
Number of successful extensions: 3399
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3399
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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