>US17_HCMVA (P09716) Hypothetical protein HVLF1|
          Length = 293

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
 Frame = -2

Query: 409 LVSSVIFSLLHG*EVAGASSSGWSPGLLILERLLACLVDI-------DIVIEFGSVSMLR 251
           +V ++  +LLHG    G+ +S  SPGLL +  +L  L  I         ++ F   S L 
Sbjct: 86  MVPTICLALLHGKRDEGSFTSPPSPGLLTIYSVLTTLSVIVASACSSSTLVTF---SGLL 142

Query: 250 SCVLFSL 230
           +CVLFSL
Sbjct: 143 ACVLFSL 149

>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)|
          Length = 2469

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
 Frame = +3

Query: 78   KSGTCQEKTTIKGCSRQALVCASRRPDPQRPDIPKRNRKKKSNPXXXXXXXRENNTQDLN 257
            +S T ++K  + G +R   V +  R  P  PD P R  +K++ P        + N+Q  N
Sbjct: 2328 ESSTKRKKGQVPGPARSESVGSFGRA-PSAPDKPPRTPRKQATPSRVLPTKPKPNSQ--N 2384

Query: 258  ILTDPNSITISISTRHANRRSRISK--PGDQPLELAP 362
                P S        H  R+ R+ K  P  +PL   P
Sbjct: 2385 KPRPPPSEQRKAEPGHTQRKDRLGKAFPQGRPLLRPP 2421

>VGNB_APMV (Q02941) Genome polyprotein B (RNA1 polyprotein) [Contains:|
           Picornain 3C-like protease (EC 3.4.22.-) (3C-like
           protease) (24 kDa protein); RNA-directed RNA polymerase
           (EC 2.7.7.48) (87 kDa protein)] (Fragment)
          Length = 729

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 322 GSANLETSRWSWRLQLLSHEAV-KK*HWTLEQPKKPVWCGYNG 447
           G   L T+ W     LL    V KK HW + + KK ++C   G
Sbjct: 639 GRGGLPTAHWLRTCMLLEKGNVRKKLHWAMAEKKKIIFCAKGG 681

>YO83_CAEEL (P34619) Hypothetical protein ZK1236.3|
          Length = 1000

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 42  VANITVLYNMP--EKSGTCQEKTTIKGCSRQALVCASRRPDP 161
           + N  + ++ P  EKSG      TIK  +   L+C SR+ DP
Sbjct: 792 LTNSIIPWHFPPYEKSGRLNVSNTIKAINEYRLLCNSRQADP 833

>BRC4_DROME (Q24206) Broad-complex core-protein isoform 6|
          Length = 880

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 122 PPGSSMRLATARSPKTRHS*EEPQEKKQPYMTPHTH*REQHTGPQHTDRPKL 277
           P GS    + + S    ++    Q+K +   +PH   ++QH    HT+ P+L
Sbjct: 445 PGGSGGTPSNSSSNNNNNNSNNQQQKVEQQSSPHQLLQQQHHSTPHTNSPQL 496

>NOTC3_HUMAN (Q9UM47) Neurogenic locus notch homolog protein 3 precursor (Notch 3)|
            [Contains: Notch 3 extracellular truncation; Notch 3
            intracellular domain]
          Length = 2321

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +2

Query: 122  PPGSSMRLATARSPKTRH--S*EEPQEKKQPYMTPHTH*REQHTGPQHTDRPK 274
            PPG S  L  A  P+  +  +   PQE+  PY+    H  E      H+  PK
Sbjct: 2180 PPGPSFLLPLAPGPQLLNPGTPVSPQERPPPYLAVPGHGEEYPVAGAHSSPPK 2232

>XRN1_HUMAN (Q8IZH2) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Strand-exchange|
            protein 1 homolog)
          Length = 1706

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 21/82 (25%), Positives = 33/82 (40%)
 Frame = +3

Query: 81   SGTCQEKTTIKGCSRQALVCASRRPDPQRPDIPKRNRKKKSNPXXXXXXXRENNTQDLNI 260
            S T   K  IK  + +  V ++RR +   P  PK+N+K  S           +N Q ++ 
Sbjct: 1368 SNTVDHKNEIKQIANEIPVSSNRRDEYGLPSQPKQNKKLASYMNKPHSANEYHNVQSMDN 1427

Query: 261  LTDPNSITISISTRHANRRSRI 326
            +  P    I   +      SRI
Sbjct: 1428 MCWPAPSQIPPVSTPVTELSRI 1449

>RHP41_SCHPO (Q10445) DNA repair protein rhp41|
          Length = 638

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +3

Query: 180 KRNRKKKSNPXXXXXXXRENNTQDLNILTDPNSITISISTRHANRRSRISKPGDQPLE 353
           +R+ KK           R N    + ++     ++   S  H  R+ RI KPG QPL+
Sbjct: 436 ERHLKKNQAIKTGKSCGRINTKNGVELVYPRKYVSNGFSAEHWYRKGRIIKPGAQPLK 493

>NINJ1_HUMAN (Q92982) Ninjurin-1 (Nerve injury-induced protein 1)|
          Length = 152

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 304 MPTGVPGSANLETSRWSWR 360
           +P G PGS +   +RW WR
Sbjct: 14  LPPGTPGSPDASPARWGWR 32


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,660,146
Number of Sequences: 219361
Number of extensions: 1242248
Number of successful extensions: 2987
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2987
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)