Clone Name | rbastl04d10 |
---|---|
Clone Library Name | barley_pub |
>gb|AC136786.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0027P09, complete sequence Length = 171861 Score = 97.6 bits (49), Expect = 3e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 282 taactcttctgtagaacagcacgtaagctgcacctgacttcacttcttcctcattgatgg 341 ||||||||||||| || ||||| || ||||||||||| || || ||||| |||||||||| Sbjct: 150420 taactcttctgtaaaagagcacataggctgcacctgattttacatcttcttcattgatgg 150361 Query: 342 cagaaacatgactatcatcaaaatt 366 |||||||||| |||||||||||||| Sbjct: 150360 cagaaacatggctatcatcaaaatt 150336 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 391 ctttatgtaagcggtatattgcccactcgccatgctaccataatgattgctaacag 446 ||||||||| || ||||| || ||||| |||||||| |||||||||||||| |||| Sbjct: 150101 ctttatgtatgctgtataatgtccacttgccatgctgccataatgattgctcacag 150046
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 97.6 bits (49), Expect = 3e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 282 taactcttctgtagaacagcacgtaagctgcacctgacttcacttcttcctcattgatgg 341 ||||||||||||| || ||||| || ||||||||||| || || ||||| |||||||||| Sbjct: 15740739 taactcttctgtaaaagagcacataggctgcacctgattttacatcttcttcattgatgg 15740680 Query: 342 cagaaacatgactatcatcaaaatt 366 |||||||||| |||||||||||||| Sbjct: 15740679 cagaaacatggctatcatcaaaatt 15740655 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 391 ctttatgtaagcggtatattgcccactcgccatgctaccataatgattgctaacag 446 ||||||||| || ||||| || ||||| |||||||| |||||||||||||| |||| Sbjct: 15740420 ctttatgtatgctgtataatgtccacttgccatgctgccataatgattgctcacag 15740365
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 97.6 bits (49), Expect = 3e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 282 taactcttctgtagaacagcacgtaagctgcacctgacttcacttcttcctcattgatgg 341 ||||||||||||| || ||||| || ||||||||||| || || ||||| |||||||||| Sbjct: 15828116 taactcttctgtaaaagagcacataggctgcacctgattttacatcttcttcattgatgg 15828057 Query: 342 cagaaacatgactatcatcaaaatt 366 |||||||||| |||||||||||||| Sbjct: 15828056 cagaaacatggctatcatcaaaatt 15828032 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 391 ctttatgtaagcggtatattgcccactcgccatgctaccataatgattgctaacag 446 ||||||||| || ||||| || ||||| |||||||| |||||||||||||| |||| Sbjct: 15827797 ctttatgtatgctgtataatgtccacttgccatgctgccataatgattgctcacag 15827742
>ref|XM_866609.1| PREDICTED: Bos taurus similar to ubiquitin specific protease, proto-oncogene isoform a, transcript variant 3 (LOC508042), mRNA Length = 4634 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 292 gtagaacagcacgtaagctgc 312 ||||||||||||||||||||| Sbjct: 3384 gtagaacagcacgtaagctgc 3364
>ref|XM_584767.2| PREDICTED: Bos taurus similar to ubiquitin specific protease, proto-oncogene isoform a, transcript variant 1 (LOC508042), mRNA Length = 2573 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 292 gtagaacagcacgtaagctgc 312 ||||||||||||||||||||| Sbjct: 1323 gtagaacagcacgtaagctgc 1303
>emb|Z49067.1|CEC44F1 Caenorhabditis elegans Cosmid C44F1, complete sequence Length = 19201 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 caattccacacacaaaaagga 161 ||||||||||||||||||||| Sbjct: 18804 caattccacacacaaaaagga 18824
>gb|AC151907.5| Mus musculus BAC clone RP23-163E23 from chromosome 15, complete sequence Length = 197165 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 aattggaccacctgttctcat 383 ||||||||||||||||||||| Sbjct: 61825 aattggaccacctgttctcat 61805
>ref|NM_065364.2| Caenorhabditis elegans Adenylyl CYclase family member (acy-3) (acy-3) mRNA, complete cds Length = 3608 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 141 caattccacacacaaaaagga 161 ||||||||||||||||||||| Sbjct: 1294 caattccacacacaaaaagga 1274
>gb|AC135113.4| Mus musculus BAC clone RP24-63N7 from 15, complete sequence Length = 173656 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 363 aattggaccacctgttctcat 383 ||||||||||||||||||||| Sbjct: 69069 aattggaccacctgttctcat 69089
>gb|AC004495.1| Homo sapiens chromosome 16, cosmid clone 400H11 (LANL), complete sequence Length = 35528 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 acacacaaaaaggaaccaaa 167 |||||||||||||||||||| Sbjct: 20034 acacacaaaaaggaaccaaa 20015
>gb|AY129336.1| Mycobacteriophage Che9d, complete genome Length = 56276 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 tgcttgctgctccatctgct 277 |||||||||||||||||||| Sbjct: 12404 tgcttgctgctccatctgct 12385
>gb|AC124413.2| Mus musculus BAC clone RP24-280K5 from chromosome 10, complete sequence Length = 178858 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 tgctgctccatctgcttctg 281 |||||||||||||||||||| Sbjct: 149175 tgctgctccatctgcttctg 149194
>ref|XM_844514.1| PREDICTED: Canis familiaris similar to G protein pathway suppressor 2 (LOC607730), mRNA Length = 1084 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 tgctccatctgcttctgtaa 284 |||||||||||||||||||| Sbjct: 858 tgctccatctgcttctgtaa 839
>gb|AC115440.6| Rattus norvegicus 4 BAC CH230-183D1 (Children's Hospital Oakland Research Institute) complete sequence Length = 143322 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 tcattgatggcagaaacatg 351 |||||||||||||||||||| Sbjct: 24211 tcattgatggcagaaacatg 24230
>gb|AC022022.10| Homo sapiens chromosome 10 clone RP11-351O1, complete sequence Length = 183604 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 attccacacacaaaaaggaa 162 |||||||||||||||||||| Sbjct: 50939 attccacacacaaaaaggaa 50920
>gb|AC164653.3| Gallus gallus BAC clone CH261-187D17 from chromosome unknown, complete sequence Length = 224272 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 gcacctgacttcacttcttc 330 |||||||||||||||||||| Sbjct: 59431 gcacctgacttcacttcttc 59450
>emb|CR352917.1| Gallus gallus finished cDNA, clone ChEST402f19 Length = 794 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 ttccattgcttgctgctcca 271 |||||||||||||||||||| Sbjct: 501 ttccattgcttgctgctcca 482
>gb|AC007151.2|AC007151 Homo sapiens clone RPCI-11_95J11, complete sequence Length = 165196 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 acacacaaaaaggaaccaaa 167 |||||||||||||||||||| Sbjct: 8427 acacacaaaaaggaaccaaa 8446
>dbj|AK130579.1| Homo sapiens cDNA FLJ27069 fis, clone SPL01503 Length = 2632 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 acacacaaaaaggaaccaaa 167 |||||||||||||||||||| Sbjct: 2177 acacacaaaaaggaaccaaa 2158
>dbj|AP004373.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-652L13, complete sequences Length = 96727 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 gtttcacacatgactgggtt 253 |||||||||||||||||||| Sbjct: 5216 gtttcacacatgactgggtt 5235 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,878,531 Number of Sequences: 3902068 Number of extensions: 3878531 Number of successful extensions: 78539 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78461 Number of HSP's gapped (non-prelim): 78 length of query: 446 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 424 effective length of database: 17,147,199,772 effective search space: 7270412703328 effective search space used: 7270412703328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)