ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl04d07 |
|---|---|
| Clone Library Name | barley_pub |
>CYB_SPIPN (Q950S3) Cytochrome b| Length = 396 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = -1 Query: 274 WTRDHVGEGGVYVGWLNHRDGHAIGVIWLTGIVVFTLVMA 155 W H+G Y + + R G++W G+V+F L+MA Sbjct: 92 WVYLHIGRNLYYGSYRSPR-----GLLWSIGVVIFILMMA 126
>CYB_ACRTE (Q8SJB6) Cytochrome b| Length = 384 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = -1 Query: 262 HVGEGGVYVGWLNHRDGHAIGVIWLTGIVVFTLVMA 155 H+G Y G+L G +W GIV+F L MA Sbjct: 95 HIGRSLYYGGYLK-------GPVWRVGIVIFLLTMA 123
>SYD_BORPE (Q7W001) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 596 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -1 Query: 268 RDHVGEGGVYVGWLNHRDGHAIGVIWL 188 RDH+G+ GW+N R H GVI++ Sbjct: 11 RDHLGQTVTLYGWVNRRRDHG-GVIFI 36
>SYD_BORPA (Q7W275) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 596 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -1 Query: 268 RDHVGEGGVYVGWLNHRDGHAIGVIWL 188 RDH+G+ GW+N R H GVI++ Sbjct: 11 RDHLGQTVTLYGWVNRRRDHG-GVIFI 36
>SYD_BORBR (Q7WR42) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 596 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -1 Query: 268 RDHVGEGGVYVGWLNHRDGHAIGVIWL 188 RDH+G+ GW+N R H GVI++ Sbjct: 11 RDHLGQTVTLYGWVNRRRDHG-GVIFI 36
>SYD_BORA1 (Q2L1K6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 596 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -1 Query: 268 RDHVGEGGVYVGWLNHRDGHAIGVIWL 188 RDH+G+ GW+N R H GVI++ Sbjct: 11 RDHLGQTVTLYGWVNRRRDHG-GVIFI 36
>MEIS3_MOUSE (P97368) Homeobox protein Meis3 (Meis1-related protein 2)| Length = 378 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -1 Query: 322 WARSYPMLPRQMSLWTWTRDHVGEGGVYVG 233 + S P LP Q + TW RDH G V++G Sbjct: 192 YTASCPSLPDQNT--TWIRDHEDSGSVHLG 219
>AAPK1_RAT (P54645) 5'-AMP-activated protein kinase catalytic subunit alpha-1| (EC 2.7.11.1) (AMPK alpha-1 chain) Length = 548 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +2 Query: 173 NYYSSQPNNSDCMAITMIQPAYINASLSDMITSPCPQAHLPGQHRI 310 NY S Q ++SD A + +S++ + +SP A PG H I Sbjct: 488 NYRSCQRSDSDAEAQGKPSEVSLTSSVTSLDSSPVDVAPRPGSHTI 533
>AAPK1_MOUSE (Q5EG47) 5'-AMP-activated protein kinase catalytic subunit alpha-1| (EC 2.7.11.1) (AMPK alpha-1 chain) Length = 548 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +2 Query: 173 NYYSSQPNNSDCMAITMIQPAYINASLSDMITSPCPQAHLPGQHRI 310 NY S Q ++SD A + +S++ + +SP A PG H I Sbjct: 488 NYRSCQRSDSDAEAQGKPSDVSLTSSVTSLDSSPVDVAPRPGSHTI 533 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,242,174 Number of Sequences: 219361 Number of extensions: 723432 Number of successful extensions: 1958 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1912 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1958 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
