ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl04d07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187605.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3744 Score = 46.1 bits (23), Expect = 0.083 Identities = 62/75 (82%) Strand = Plus / Minus Query: 309 tagctccttgcccatcaccaccgccgtcatcatcagcttaccggcgtccggaaaagtgtc 368 ||||||||||||||| | |||||| |||||||||| ||||| || || || ||| | Sbjct: 3699 tagctccttgcccattatcaccgcggtcatcatcaatttacccgcatcagggaaatcctt 3640 Query: 369 gtgctgcatcagcac 383 ||||||||||||||| Sbjct: 3639 gtgctgcatcagcac 3625
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.083 Identities = 62/75 (82%) Strand = Plus / Minus Query: 309 tagctccttgcccatcaccaccgccgtcatcatcagcttaccggcgtccggaaaagtgtc 368 ||||||||||||||| | |||||| |||||||||| ||||| || || || ||| | Sbjct: 6548638 tagctccttgcccattatcaccgcggtcatcatcaatttacccgcatcagggaaatcctt 6548579 Query: 369 gtgctgcatcagcac 383 ||||||||||||||| Sbjct: 6548578 gtgctgcatcagcac 6548564
>gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0081P02, complete sequence Length = 162425 Score = 46.1 bits (23), Expect = 0.083 Identities = 62/75 (82%) Strand = Plus / Minus Query: 309 tagctccttgcccatcaccaccgccgtcatcatcagcttaccggcgtccggaaaagtgtc 368 ||||||||||||||| | |||||| |||||||||| ||||| || || || ||| | Sbjct: 91400 tagctccttgcccattatcaccgcggtcatcatcaatttacccgcatcagggaaatcctt 91341 Query: 369 gtgctgcatcagcac 383 ||||||||||||||| Sbjct: 91340 gtgctgcatcagcac 91326
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.083 Identities = 62/75 (82%) Strand = Plus / Minus Query: 309 tagctccttgcccatcaccaccgccgtcatcatcagcttaccggcgtccggaaaagtgtc 368 ||||||||||||||| | |||||| |||||||||| ||||| || || || ||| | Sbjct: 6547851 tagctccttgcccattatcaccgcggtcatcatcaatttacccgcatcagggaaatcctt 6547792 Query: 369 gtgctgcatcagcac 383 ||||||||||||||| Sbjct: 6547791 gtgctgcatcagcac 6547777
>dbj|AK073981.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076C04, full insert sequence Length = 4184 Score = 46.1 bits (23), Expect = 0.083 Identities = 62/75 (82%) Strand = Plus / Minus Query: 309 tagctccttgcccatcaccaccgccgtcatcatcagcttaccggcgtccggaaaagtgtc 368 ||||||||||||||| | |||||| |||||||||| ||||| || || || ||| | Sbjct: 3931 tagctccttgcccattatcaccgcggtcatcatcaatttacccgcatcagggaaatcctt 3872 Query: 369 gtgctgcatcagcac 383 ||||||||||||||| Sbjct: 3871 gtgctgcatcagcac 3857
>gb|AC107079.6| Homo sapiens BAC clone RP11-585E12 from 2, complete sequence Length = 133304 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 24 atatttcaattttcaaaacaca 45 |||||||||||||||||||||| Sbjct: 33735 atatttcaattttcaaaacaca 33756
>gb|AC158537.2| Mus musculus BAC clone RP23-2H7 from chromosome 14, complete sequence Length = 204554 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 52 gctaaaagaaaaaaggcaaga 72 ||||||||||||||||||||| Sbjct: 149916 gctaaaagaaaaaaggcaaga 149896
>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence Length = 1653225 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 321 catcaccaccgccgtcatcat 341 ||||||||||||||||||||| Sbjct: 1531998 catcaccaccgccgtcatcat 1531978
>gb|AC093543.8| Trypanosoma brucei chromosome 3 clone RPCI93-5L5, complete sequence Length = 148711 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 321 catcaccaccgccgtcatcat 341 ||||||||||||||||||||| Sbjct: 106210 catcaccaccgccgtcatcat 106190
>ref|XM_821830.1| Trypanosoma brucei TREU927 clone RPCI93-5L5 hypothetical protein (Tb927.3.5470) partial mRNA Length = 528 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 321 catcaccaccgccgtcatcat 341 ||||||||||||||||||||| Sbjct: 178 catcaccaccgccgtcatcat 158
>gb|AC112520.5| Mus musculus BAC clone RP23-2N4 from 12, complete sequence Length = 233153 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 aaaagaaaaaaggcaagagct 75 ||||||||||||||||||||| Sbjct: 51198 aaaagaaaaaaggcaagagct 51218
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 accaccgccgtcatcatcagc 345 ||||||||||||||||||||| Sbjct: 4915814 accaccgccgtcatcatcagc 4915834
>gb|AC154105.2| Mus musculus BAC clone RP24-457N12 from chromosome 12, complete sequence Length = 237236 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 aaaagaaaaaaggcaagagct 75 ||||||||||||||||||||| Sbjct: 225307 aaaagaaaaaaggcaagagct 225327
>gb|AC155885.2| Medicago truncatula chromosome 7 BAC clone mth2-10p23, complete sequence Length = 116747 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 cagtacatcatagagtaaaaa 142 ||||||||||||||||||||| Sbjct: 103321 cagtacatcatagagtaaaaa 103301
>emb|AL935209.14| Zebrafish DNA sequence from clone DKEY-61N16, complete sequence Length = 162012 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 gccgacaatggacatcagtacatca 131 |||||||||||||| |||||||||| Sbjct: 90169 gccgacaatggacaacagtacatca 90145
>gb|AC159440.1| Trypanosoma brucei chromosome 3 clone RPCI93-2H15, complete sequence Length = 152294 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 atcaccaccgccgtcatcat 341 |||||||||||||||||||| Sbjct: 31420 atcaccaccgccgtcatcat 31401
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 cttgcccatcaccaccgccg 334 |||||||||||||||||||| Sbjct: 3495537 cttgcccatcaccaccgccg 3495556
>gb|AC102622.7| Mus musculus chromosome 3, clone RP23-434O10, complete sequence Length = 237899 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 ccatcaccaccgccgtcatcatca 343 ||||||||||| |||||||||||| Sbjct: 223315 ccatcaccaccaccgtcatcatca 223338
>gb|AC121121.13| Mus musculus chromosome 9, clone RP23-401G21, complete sequence Length = 226672 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gctaaaagaaaaaaggcaag 71 |||||||||||||||||||| Sbjct: 89405 gctaaaagaaaaaaggcaag 89386
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold Length = 1996640 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ctaaaagaaaaaaggcaaga 72 |||||||||||||||||||| Sbjct: 250549 ctaaaagaaaaaaggcaaga 250568
>gb|AC183773.2| Pan troglodytes BAC clone CH251-2N7 from chromosome 7, complete sequence Length = 168126 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 aaaaggcaagagctgacaac 81 |||||||||||||||||||| Sbjct: 25652 aaaaggcaagagctgacaac 25633
>ref|XM_544643.2| PREDICTED: Canis familiaris similar to StAR-related lipid transfer protein 9 (StARD9) (START domain-containing protein 9) (LOC487519), mRNA Length = 13338 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 atcagtacatcatagagtaa 139 |||||||||||||||||||| Sbjct: 5061 atcagtacatcatagagtaa 5080
>emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4, left end Length = 225394 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 caccaccgccgtcatcatca 343 |||||||||||||||||||| Sbjct: 202016 caccaccgccgtcatcatca 201997
>emb|Z81556.1|CEF58G1 Caenorhabditis elegans Cosmid F58G1, complete sequence Length = 37666 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 ccatcaccaccgccgtcatc 339 |||||||||||||||||||| Sbjct: 24617 ccatcaccaccgccgtcatc 24636
>gb|AC121580.3| Mus musculus BAC clone RP23-255J21 from 9, complete sequence Length = 200282 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gctaaaagaaaaaaggcaag 71 |||||||||||||||||||| Sbjct: 18586 gctaaaagaaaaaaggcaag 18605
>emb|CR731756.2|CNS0GRKH Tetraodon nigroviridis full-length cDNA Length = 1219 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 318 gcccatcaccaccgccgtcatcatcagc 345 ||||| |||||||||||| ||||||||| Sbjct: 349 gcccagcaccaccgccgtgatcatcagc 322
>gb|AC092648.3| Homo sapiens BAC clone RP11-421N10 from 7, complete sequence Length = 171881 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 aaaaggcaagagctgacaac 81 |||||||||||||||||||| Sbjct: 77893 aaaaggcaagagctgacaac 77912
>gb|AC150706.4| Medicago truncatula clone mth2-132l18, complete sequence Length = 105472 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 atttcaattttcaaaacaca 45 |||||||||||||||||||| Sbjct: 57512 atttcaattttcaaaacaca 57493
>emb|AL591069.5| Human DNA sequence from clone RP11-72O9 on chromosome 6q25.2-26 Contains the 3' end of the SSLC22A3 gene for solute carrier family 22 (extraneuronal monoamine transporter), member 3 (extraneuronal monoamine transporter solute carrier family 22 (organic cation transporter), member 3(EMT, EMTh, OCT3)), the APOARGC gene for apolipoprotein (a) related gene C and a plasminogen (PLG) pseudogene, complete sequence Length = 162083 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 ccatcaccaccgccgtcatcatca 343 |||||||||||||| ||||||||| Sbjct: 104974 ccatcaccaccgccatcatcatca 104951
>emb|AL445438.27| Human DNA sequence from clone RP11-427B20 on chromosome 1 Contains two CpG islands, complete sequence Length = 108271 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 tggccatcacaagagtaaaa 173 |||||||||||||||||||| Sbjct: 98473 tggccatcacaagagtaaaa 98492
>emb|CR936848.6| Mouse DNA sequence from clone DN-315E9 on chromosome 3, complete sequence Length = 144824 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 ccatcaccaccgccgtcatcatca 343 ||||||||||| |||||||||||| Sbjct: 90119 ccatcaccaccaccgtcatcatca 90096
>gb|AC119414.51| Medicago truncatula clone mth2-23d7, complete sequence Length = 159149 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 atatttcaattttcaaaaca 43 |||||||||||||||||||| Sbjct: 62881 atatttcaattttcaaaaca 62900
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 gacaatggacatcagtacat 129 |||||||||||||||||||| Sbjct: 2027583 gacaatggacatcagtacat 2027602
>gb|AC010633.8| Homo sapiens chromosome 5 clone CTD-2317K6, complete sequence Length = 195931 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 attcagccagcctacataaa 243 |||||||||||||||||||| Sbjct: 122946 attcagccagcctacataaa 122927
>gb|AC008964.6|AC008964 Homo sapiens chromosome 5 clone CTD-2360A17, complete sequence Length = 143841 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 attcagccagcctacataaa 243 |||||||||||||||||||| Sbjct: 35994 attcagccagcctacataaa 35975
>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome Length = 143461 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 314 ccttgcccatcaccaccgccgtca 337 ||||||||||||||| |||||||| Sbjct: 67677 ccttgcccatcaccagcgccgtca 67654
>gb|AC161625.5| Pan troglodytes BAC clone CH251-98N20 from chromosome unknown, complete sequence Length = 179977 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 ccatcaccaccgccgtcatcatca 343 ||||||||||| |||||||||||| Sbjct: 31808 ccatcaccaccaccgtcatcatca 31785
>gb|AC105312.2| Homo sapiens BAC clone RP11-17C4 from 4, complete sequence Length = 127437 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 269 agtccatgtccacaggctcatctg 292 |||||||||||| ||||||||||| Sbjct: 105300 agtccatgtccaaaggctcatctg 105277
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 gcccatcaccaccgccgtca 337 |||||||||||||||||||| Sbjct: 8218664 gcccatcaccaccgccgtca 8218683
>gb|AC145408.3| Macropus eugenii clone ME_KBa-210L14, complete sequence Length = 175088 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ctaaaagaaaaaaggcaaga 72 |||||||||||||||||||| Sbjct: 11248 ctaaaagaaaaaaggcaaga 11267
>gb|AC145407.3| Macropus eugenii clone ME_KBa-169G7, complete sequence Length = 129708 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ctaaaagaaaaaaggcaaga 72 |||||||||||||||||||| Sbjct: 116233 ctaaaagaaaaaaggcaaga 116252
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 aaccaaataactccgattgcatgg 212 ||||||| |||||||||||||||| Sbjct: 4460831 aaccaaacaactccgattgcatgg 4460808
>gb|AC131790.4| Mus musculus BAC clone RP24-447L18 from 3, complete sequence Length = 170634 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 catgtccacaggctcatctg 292 |||||||||||||||||||| Sbjct: 96423 catgtccacaggctcatctg 96404
>gb|DQ176432.1| Potamon ibericum prepro crustacean hyperglycemic hormone pericardial organ isoform mRNA, complete cds Length = 1873 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 ccatcaccaccgccgtcatc 339 |||||||||||||||||||| Sbjct: 111 ccatcaccaccgccgtcatc 92
>gb|DQ176431.1| Potamon ibericum prepro crustacean hyperglycemic hormone X organ isoform mRNA, complete cds Length = 1768 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 ccatcaccaccgccgtcatc 339 |||||||||||||||||||| Sbjct: 111 ccatcaccaccgccgtcatc 92
>gb|AC161433.5| Mus musculus chromosome 8, clone RP23-50F12, complete sequence Length = 253440 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 ccatcaccaccgccgtcatcatca 343 ||||||||||| |||||||||||| Sbjct: 64055 ccatcaccaccaccgtcatcatca 64078 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 ccatcaccaccgccgtcatcatca 343 ||||||||||| |||||||||||| Sbjct: 63992 ccatcaccaccaccgtcatcatca 64015
>emb|AL683824.8| Mouse DNA sequence from clone RP23-90O18 on chromosome 3, complete sequence Length = 233589 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 ccatcaccaccgccgtcatcatca 343 ||||||||||| |||||||||||| Sbjct: 56122 ccatcaccaccaccgtcatcatca 56099
>gb|AC120785.13| Mus musculus chromosome 8, clone RP23-336P3, complete sequence Length = 238405 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 ccatcaccaccgccgtcatcatca 343 ||||||||||| |||||||||||| Sbjct: 95914 ccatcaccaccaccgtcatcatca 95891 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 ccatcaccaccgccgtcatcatca 343 ||||||||||| |||||||||||| Sbjct: 95851 ccatcaccaccaccgtcatcatca 95828
>gb|L00676.1|SH1ULGNS Pseudorabies virus (Suid herpesvirus 1) UL18 through UL21 genes, complete cds and UL15 gene, 3' end Length = 9382 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 314 ccttgcccatcaccaccgccgtca 337 ||||||||||||||| |||||||| Sbjct: 3945 ccttgcccatcaccagcgccgtca 3922
>emb|AL732606.5| Mouse DNA sequence from clone RP23-271B17 on chromosome 11, complete sequence Length = 113285 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 catatttcaattttcaaaac 42 |||||||||||||||||||| Sbjct: 91341 catatttcaattttcaaaac 91322 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,282,441 Number of Sequences: 3902068 Number of extensions: 4282441 Number of successful extensions: 71679 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71436 Number of HSP's gapped (non-prelim): 243 length of query: 385 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 363 effective length of database: 17,147,199,772 effective search space: 6224433517236 effective search space used: 6224433517236 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
