ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRUM1_MOUSE (Q8VHS2) Crumbs homolog 1 precursor 29 3.1
2CFTR_CARPS (Q2QLC5) Cystic fibrosis transmembrane conductance re... 28 4.0
3HXA9_HETFR (Q9IA26) Homeobox protein Hox-A9 28 6.9
4MTH10_DROME (Q9W0R5) Probable G-protein coupled receptor Mth-lik... 28 6.9
5MTH2_DROSI (Q95NQ0) G-protein coupled receptor Mth2 precursor (P... 28 6.9
6FTSK_LISMO (Q8Y7A3) DNA translocase ftsK 27 9.0

>CRUM1_MOUSE (Q8VHS2) Crumbs homolog 1 precursor|
          Length = 1405

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 318 HSKAICEHKAIMYICHCPTPYT 383
           H+ A CE     YICHC   YT
Sbjct: 310 HNDATCEDTVDSYICHCRPGYT 331



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>CFTR_CARPS (Q2QLC5) Cystic fibrosis transmembrane conductance regulator (CFTR)|
            (cAMP-dependent chloride channel) (ATP-binding cassette
            transporter sub-family C member 7)
          Length = 1482

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 210  MVHILLTTSNLLHHRSSTSLVLHNLLH 290
            +VH L+T S +LHH+     +LH++LH
Sbjct: 938  LVHSLITVSKILHHK-----MLHSVLH 959



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>HXA9_HETFR (Q9IA26) Homeobox protein Hox-A9|
          Length = 260

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 109 FVSKSSYVVTSWSAKMARTKGNVPLQTHP 195
           F SK++   TSWS   A++  N+P   HP
Sbjct: 53  FQSKATVFSTSWSPVHAQSSANMPTVYHP 81



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>MTH10_DROME (Q9W0R5) Probable G-protein coupled receptor Mth-like 10 precursor|
           (Protein methuselah-like 10)
          Length = 575

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 15  LPCNLYIMINTRHHNLWFS*SYNFYLYTLP 104
           +PCN Y  +N   H L+ + SY++Y   +P
Sbjct: 54  VPCNFYDTVNLTGHRLFPNGSYDYYGTIVP 83



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>MTH2_DROSI (Q95NQ0) G-protein coupled receptor Mth2 precursor (Protein|
           methuselah-2)
          Length = 536

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 15  LPCNLYIMINTRHHNLWFS*SYNFYLYTLP 104
           +PCN Y  +N   H L+ + SY++Y   +P
Sbjct: 15  VPCNFYDTVNLTGHRLFPNGSYDYYGTIVP 44



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>FTSK_LISMO (Q8Y7A3) DNA translocase ftsK|
          Length = 757

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 235 LVVKRICTIYQIIRGVSVMVHYLWFLPSLPTKMSPHSLTWRQTFGRVYK 89
           L  KR+  IY I+ G    +H  + + +L    S  S TW+     +++
Sbjct: 88  LFSKRLVGIYLIVLGFLTYIHMYFIIHNLGANASVVSSTWKLVLENLFR 136


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,204,375
Number of Sequences: 219361
Number of extensions: 1259849
Number of successful extensions: 3700
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3700
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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