Clone Information

BLAST Search Result

Clone Name	rbastl04d04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|DQ201163.1\| Hordeum vulgare subsp. vulgare cultivar CI6155 cr...	773	0.0
2	gb\|DQ201162.1\| Hordeum vulgare subsp. vulgare cultivar Morex cry...	773	0.0
3	gb\|DQ201151.1\| Hordeum vulgare subsp. vulgare cultivar Kompolti ...	759	0.0
4	gb\|DQ201150.1\| Hordeum vulgare subsp. vulgare cultivar Morex cry...	759	0.0
5	gb\|DQ201149.1\| Hordeum vulgare subsp. vulgare cultivar Dicktoo c...	759	0.0
6	ref\|XM_466372.1\| Oryza sativa (japonica cultivar-group), mRNA	52	0.001
7	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.001
8	dbj\|AP005699.3\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.001
9	dbj\|AK064910.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.001
10	dbj\|AB073546.1\| Oryza sativa (japonica cultivar-group) OsCRY1a m...	52	0.001
11	dbj\|AB024337.1\| Oryza sativa (japonica cultivar-group) mRNA for ...	52	0.001
12	gb\|AC073881.3\|AC073881 Homo sapiens chromosome 15 clone CTD-2169...	44	0.34
13	gb\|AC116657.3\| Mus musculus BAC clone RP23-289E18 from 15, compl...	42	1.3
14	emb\|AL591521.8\| Human DNA sequence from clone RP5-965F6 on chrom...	42	1.3
15	emb\|AL691509.6\| Mouse DNA sequence from clone RP23-222A18 on chr...	42	1.3
16	ref\|NM_130382.1\| Arabidopsis thaliana ATGPX4 (GLUTATHIONE PEROXI...	40	5.3
17	ref\|XM_632878.1\| Dictyostelium discoideum hypothetical protein (...	40	5.3
18	gb\|AC157569.12\| Mus musculus chromosome 3, clone RP23-434M21, co...	40	5.3
19	gb\|AC162527.5\| Mus musculus BAC clone RP23-30M17 from chromosome...	40	5.3
20	gb\|AC123985.10\| Mus musculus chromosome 14, clone RP23-154G18, c...	40	5.3
21	gb\|AC069444.17\| Homo sapiens 3 BAC RP11-169N13 (Roswell Park Can...	40	5.3
22	gb\|AF364606.1\| Homo sapiens orphan nuclear receptors (NR1I2) gen...	40	5.3
23	gb\|AC007656.2\| Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Par...	40	5.3
24	gb\|AC158515.2\| Mus musculus BAC clone RP24-487D11 from chromosom...	40	5.3
25	gb\|AC154592.2\| Mus musculus BAC clone RP23-249J17 from chromosom...	40	5.3
26	gb\|BT003735.1\| Arabidopsis thaliana At2g48150 mRNA, complete cds	40	5.3
27	gb\|AC129909.4\| Branchiostoma floridae, clone -15I20, complete se...	40	5.3
28	gb\|AY088692.1\| Arabidopsis thaliana clone 92074 mRNA, complete s...	40	5.3
29	gb\|AC009299.5\| Homo sapiens BAC clone RP11-26B22 from 2, complet...	40	5.3
30	dbj\|AK118448.1\| Arabidopsis thaliana At2g48150 mRNA for putative...	40	5.3
31	gb\|AC156025.2\| Mus musculus BAC clone RP23-71L21 from 14, comple...	40	5.3
32	emb\|CT010509.10\| Mouse DNA sequence from clone RP23-63E8 on chro...	40	5.3
33	emb\|AL845291.5\| Mouse DNA sequence from clone RP23-1O11 on chrom...	40	5.3

>gb|DQ201163.1| Hordeum vulgare subsp. vulgare cultivar CI6155 cryptochrome 1a mRNA,
            partial cds
          Length = 1400

 Score =  773 bits (390), Expect = 0.0
 Identities = 393/394 (99%)
 Strand = Plus / Minus

                                                                        
Query: 3    atggaaaggactctgccttgtaacctctatataatgatcaatacaaggcaccacaacctg 62
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1374 atggaaaggactctgccttgtaacctctatataatgatcaatacaaggcaccacaacctg 1315

                                                                        
Query: 63   tggttttcctaatcttacaatttttatttgtacactctgccaaaggtttgtctccaagtc 122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1314 tggttttcctaatcttacaatttttatttgtacactctgccaaaggtttgtctccaagtc 1255

                                                                        
Query: 123  aagctatgtggtgacatcttggtcggcaaagatggcaagaaccaaaggtaatgtaccatt 182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1254 aagctatgtggtgacatcttggtcggcaaagatggcaagaaccaaaggtaatgtaccatt 1195

                                                                        
Query: 183  acagacacaccccttataatctgataaatggtgcatatccttttgacaactagcaatcta 242
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1194 acagacataccccttataatctgataaatggtgcatatccttttgacaactagcaatcta 1135

                                                                        
Query: 243  ctacaccacagaagttctacaagtctagttttacacaacttattgcacccatgaagctgc 302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1134 ctacaccacagaagttctacaagtctagttttacacaacttattgcacccatgaagctgc 1075

                                                                        
Query: 303  atcacttgattcctgcatagcaaggctatatgtgaacataaggcgataatgtacatatgt 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 atcacttgattcctgcatagcaaggctatatgtgaacataaggcgataatgtacatatgt 1015

                                              
Query: 363  cactgtccaacgccctacacaattaaattcgtta 396
            ||||||||||||||||||||||||||||||||||
Sbjct: 1014 cactgtccaacgccctacacaattaaattcgtta 981

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>gb|DQ201162.1| Hordeum vulgare subsp. vulgare cultivar Morex cryptochrome 1a mRNA,
            partial cds
          Length = 1415

 Score =  773 bits (390), Expect = 0.0
 Identities = 393/394 (99%)
 Strand = Plus / Minus

                                                                        
Query: 3    atggaaaggactctgccttgtaacctctatataatgatcaatacaaggcaccacaacctg 62
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1365 atggaaaggactctgccttgtaacctctatataatgatcaatacaaggcaccacaacctg 1306

                                                                        
Query: 63   tggttttcctaatcttacaatttttatttgtacactctgccaaaggtttgtctccaagtc 122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1305 tggttttcctaatcttacaatttttatttgtacactctgccaaaggtttgtctccaagtc 1246

                                                                        
Query: 123  aagctatgtggtgacatcttggtcggcaaagatggcaagaaccaaaggtaatgtaccatt 182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1245 aagctatgtggtgacatcttggtcggcaaagatggcaagaaccaaaggtaatgtaccatt 1186

                                                                        
Query: 183  acagacacaccccttataatctgataaatggtgcatatccttttgacaactagcaatcta 242
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1185 acagacataccccttataatctgataaatggtgcatatccttttgacaactagcaatcta 1126

                                                                        
Query: 243  ctacaccacagaagttctacaagtctagttttacacaacttattgcacccatgaagctgc 302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 ctacaccacagaagttctacaagtctagttttacacaacttattgcacccatgaagctgc 1066

                                                                        
Query: 303  atcacttgattcctgcatagcaaggctatatgtgaacataaggcgataatgtacatatgt 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 atcacttgattcctgcatagcaaggctatatgtgaacataaggcgataatgtacatatgt 1006

                                              
Query: 363  cactgtccaacgccctacacaattaaattcgtta 396
            ||||||||||||||||||||||||||||||||||
Sbjct: 1005 cactgtccaacgccctacacaattaaattcgtta 972

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>gb|DQ201151.1| Hordeum vulgare subsp. vulgare cultivar Kompolti korai cryptochrome
            1a (Cry1a) gene, complete cds
          Length = 3808

 Score =  759 bits (383), Expect = 0.0
 Identities = 386/387 (99%)
 Strand = Plus / Minus

                                                                        
Query: 10   ggactctgccttgtaacctctatataatgatcaatacaaggcaccacaacctgtggtttt 69
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3808 ggactctgccttgtaacctctatataatgatcaatacaaggcaccacaacctgtggtttt 3749

                                                                        
Query: 70   cctaatcttacaatttttatttgtacactctgccaaaggtttgtctccaagtcaagctat 129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3748 cctaatcttacaatttttatttgtacactctgccaaaggtttgtctccaagtcaagctat 3689

                                                                        
Query: 130  gtggtgacatcttggtcggcaaagatggcaagaaccaaaggtaatgtaccattacagaca 189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3688 gtggtgacatcttggtcggcaaagatggcaagaaccaaaggtaatgtaccattacagaca 3629

                                                                        
Query: 190  caccccttataatctgataaatggtgcatatccttttgacaactagcaatctactacacc 249
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3628 taccccttataatctgataaatggtgcatatccttttgacaactagcaatctactacacc 3569

                                                                        
Query: 250  acagaagttctacaagtctagttttacacaacttattgcacccatgaagctgcatcactt 309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3568 acagaagttctacaagtctagttttacacaacttattgcacccatgaagctgcatcactt 3509

                                                                        
Query: 310  gattcctgcatagcaaggctatatgtgaacataaggcgataatgtacatatgtcactgtc 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3508 gattcctgcatagcaaggctatatgtgaacataaggcgataatgtacatatgtcactgtc 3449

                                       
Query: 370  caacgccctacacaattaaattcgtta 396
            |||||||||||||||||||||||||||
Sbjct: 3448 caacgccctacacaattaaattcgtta 3422

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>gb|DQ201150.1| Hordeum vulgare subsp. vulgare cultivar Morex cryptochrome 1a (Cry1a)
            gene, complete cds
          Length = 3808

 Score =  759 bits (383), Expect = 0.0
 Identities = 386/387 (99%)
 Strand = Plus / Minus

                                                                        
Query: 10   ggactctgccttgtaacctctatataatgatcaatacaaggcaccacaacctgtggtttt 69
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3808 ggactctgccttgtaacctctatataatgatcaatacaaggcaccacaacctgtggtttt 3749

                                                                        
Query: 70   cctaatcttacaatttttatttgtacactctgccaaaggtttgtctccaagtcaagctat 129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3748 cctaatcttacaatttttatttgtacactctgccaaaggtttgtctccaagtcaagctat 3689

                                                                        
Query: 130  gtggtgacatcttggtcggcaaagatggcaagaaccaaaggtaatgtaccattacagaca 189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3688 gtggtgacatcttggtcggcaaagatggcaagaaccaaaggtaatgtaccattacagaca 3629

                                                                        
Query: 190  caccccttataatctgataaatggtgcatatccttttgacaactagcaatctactacacc 249
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3628 taccccttataatctgataaatggtgcatatccttttgacaactagcaatctactacacc 3569

                                                                        
Query: 250  acagaagttctacaagtctagttttacacaacttattgcacccatgaagctgcatcactt 309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3568 acagaagttctacaagtctagttttacacaacttattgcacccatgaagctgcatcactt 3509

                                                                        
Query: 310  gattcctgcatagcaaggctatatgtgaacataaggcgataatgtacatatgtcactgtc 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3508 gattcctgcatagcaaggctatatgtgaacataaggcgataatgtacatatgtcactgtc 3449

                                       
Query: 370  caacgccctacacaattaaattcgtta 396
            |||||||||||||||||||||||||||
Sbjct: 3448 caacgccctacacaattaaattcgtta 3422

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>gb|DQ201149.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo cryptochrome 1a
            (Cry1a) gene, complete cds
          Length = 3808

 Score =  759 bits (383), Expect = 0.0
 Identities = 386/387 (99%)
 Strand = Plus / Minus

                                                                        
Query: 10   ggactctgccttgtaacctctatataatgatcaatacaaggcaccacaacctgtggtttt 69
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3808 ggactctgccttgtaacctctatataatgatcaatacaaggcaccacaacctgtggtttt 3749

                                                                        
Query: 70   cctaatcttacaatttttatttgtacactctgccaaaggtttgtctccaagtcaagctat 129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3748 cctaatcttacaatttttatttgtacactctgccaaaggtttgtctccaagtcaagctat 3689

                                                                        
Query: 130  gtggtgacatcttggtcggcaaagatggcaagaaccaaaggtaatgtaccattacagaca 189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3688 gtggtgacatcttggtcggcaaagatggcaagaaccaaaggtaatgtaccattacagaca 3629

                                                                        
Query: 190  caccccttataatctgataaatggtgcatatccttttgacaactagcaatctactacacc 249
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3628 taccccttataatctgataaatggtgcatatccttttgacaactagcaatctactacacc 3569

                                                                        
Query: 250  acagaagttctacaagtctagttttacacaacttattgcacccatgaagctgcatcactt 309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3568 acagaagttctacaagtctagttttacacaacttattgcacccatgaagctgcatcactt 3509

                                                                        
Query: 310  gattcctgcatagcaaggctatatgtgaacataaggcgataatgtacatatgtcactgtc 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3508 gattcctgcatagcaaggctatatgtgaacataaggcgataatgtacatatgtcactgtc 3449

                                       
Query: 370  caacgccctacacaattaaattcgtta 396
            |||||||||||||||||||||||||||
Sbjct: 3448 caacgccctacacaattaaattcgtta 3422

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>ref|XM_466372.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2832

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 119/148 (80%), Gaps = 4/148 (2%)
 Strand = Plus / Minus

                                                                        
Query: 216  catatccttttgacaactagcaatctactacaccacagaagttctacaagtctagtttta 275
            ||||||||||||||||||||||| |  ||| |||||| | |||||  ||  |||| ||||
Sbjct: 2740 catatccttttgacaactagcaaac--ctataccacaaatgttctgtaaaactagcttta 2683

                                                                        
Query: 276  cacaac--ttattgcacccatgaagctgcatcacttgattcctgcatagcaaggctatat 333
            || ||   |||||||| | | |||||| ||||||||||||| |||| | |||||||||| 
Sbjct: 2682 cataatcattattgcatcaaggaagcttcatcacttgattcatgcacaccaaggctatag 2623

                                        
Query: 334  gtgaacataaggcgataatgtacatatg 361
               |||| |||| |||||| ||||||||
Sbjct: 2622 acaaacaaaaggtgataatttacatatg 2595

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 119/148 (80%), Gaps = 4/148 (2%)
 Strand = Plus / Minus

                                                                            
Query: 216      catatccttttgacaactagcaatctactacaccacagaagttctacaagtctagtttta 275
                ||||||||||||||||||||||| |  ||| |||||| | |||||  ||  |||| ||||
Sbjct: 21999575 catatccttttgacaactagcaaac--ctataccacaaatgttctgtaaaactagcttta 21999518

                                                                            
Query: 276      cacaac--ttattgcacccatgaagctgcatcacttgattcctgcatagcaaggctatat 333
                || ||   |||||||| | | |||||| ||||||||||||| |||| | |||||||||| 
Sbjct: 21999517 cataatcattattgcatcaaggaagcttcatcacttgattcatgcacaccaaggctatag 21999458

                                            
Query: 334      gtgaacataaggcgataatgtacatatg 361
                   |||| |||| |||||| ||||||||
Sbjct: 21999457 acaaacaaaaggtgataatttacatatg 21999430

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>dbj|AP005699.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0046L23
          Length = 100041

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 119/148 (80%), Gaps = 4/148 (2%)
 Strand = Plus / Minus

                                                                         
Query: 216   catatccttttgacaactagcaatctactacaccacagaagttctacaagtctagtttta 275
             ||||||||||||||||||||||| |  ||| |||||| | |||||  ||  |||| ||||
Sbjct: 48197 catatccttttgacaactagcaaac--ctataccacaaatgttctgtaaaactagcttta 48140

                                                                         
Query: 276   cacaac--ttattgcacccatgaagctgcatcacttgattcctgcatagcaaggctatat 333
             || ||   |||||||| | | |||||| ||||||||||||| |||| | |||||||||| 
Sbjct: 48139 cataatcattattgcatcaaggaagcttcatcacttgattcatgcacaccaaggctatag 48080

                                         
Query: 334   gtgaacataaggcgataatgtacatatg 361
                |||| |||| |||||| ||||||||
Sbjct: 48079 acaaacaaaaggtgataatttacatatg 48052

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>dbj|AK064910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M07, full
            insert sequence
          Length = 2833

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 119/148 (80%), Gaps = 4/148 (2%)
 Strand = Plus / Minus

                                                                        
Query: 216  catatccttttgacaactagcaatctactacaccacagaagttctacaagtctagtttta 275
            ||||||||||||||||||||||| |  ||| |||||| | |||||  ||  |||| ||||
Sbjct: 2741 catatccttttgacaactagcaaac--ctataccacaaatgttctgtaaaactagcttta 2684

                                                                        
Query: 276  cacaac--ttattgcacccatgaagctgcatcacttgattcctgcatagcaaggctatat 333
            || ||   |||||||| | | |||||| ||||||||||||| |||| | |||||||||| 
Sbjct: 2683 cataatcattattgcatcaaggaagcttcatcacttgattcatgcacaccaaggctatag 2624

                                        
Query: 334  gtgaacataaggcgataatgtacatatg 361
               |||| |||| |||||| ||||||||
Sbjct: 2623 acaaacaaaaggtgataatttacatatg 2596

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>dbj|AB073546.1| Oryza sativa (japonica cultivar-group) OsCRY1a mRNA for cryptochrome
            1a, complete cds
          Length = 2587

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 119/148 (80%), Gaps = 4/148 (2%)
 Strand = Plus / Minus

                                                                        
Query: 216  catatccttttgacaactagcaatctactacaccacagaagttctacaagtctagtttta 275
            ||||||||||||||||||||||| |  ||| |||||| | |||||  ||  |||| ||||
Sbjct: 2432 catatccttttgacaactagcaaac--ctataccacaaatgttctgtaaaactagcttta 2375

                                                                        
Query: 276  cacaac--ttattgcacccatgaagctgcatcacttgattcctgcatagcaaggctatat 333
            || ||   |||||||| | | |||||| ||||||||||||| |||| | |||||||||| 
Sbjct: 2374 cataatcattattgcatcaaggaagcttcatcacttgattcatgcacaccaaggctatag 2315

                                        
Query: 334  gtgaacataaggcgataatgtacatatg 361
               |||| |||| |||||| ||||||||
Sbjct: 2314 acaaacaaaaggtgataatttacatatg 2287

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>dbj|AB024337.1| Oryza sativa (japonica cultivar-group) mRNA for blue-light
            photoreceptor, complete cds
          Length = 2797

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 119/148 (80%), Gaps = 4/148 (2%)
 Strand = Plus / Minus

                                                                        
Query: 216  catatccttttgacaactagcaatctactacaccacagaagttctacaagtctagtttta 275
            ||||||||||||||||||||||| |  ||| |||||| | |||||  ||  |||| ||||
Sbjct: 2706 catatccttttgacaactagcaaac--ctataccacaaatgttctgtaaaactagcttta 2649

                                                                        
Query: 276  cacaac--ttattgcacccatgaagctgcatcacttgattcctgcatagcaaggctatat 333
            || ||   |||||||| | | |||||| ||||||||||||| |||| | |||||||||| 
Sbjct: 2648 cataatcattattgcatcaaggaagcttcatcacttgattcatgcacaccaaggctatag 2589

                                        
Query: 334  gtgaacataaggcgataatgtacatatg 361
               |||| |||| |||||| ||||||||
Sbjct: 2588 acaaacaaaaggtgataatttacatatg 2561

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>gb|AC073881.3|AC073881 Homo sapiens chromosome 15 clone CTD-2169K18 map 15q21.3, complete
             sequence
          Length = 125463

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 1     gaatggaaaggactctgccttg 22
             ||||||||||||||||||||||
Sbjct: 42818 gaatggaaaggactctgccttg 42839

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>gb|AC116657.3| Mus musculus BAC clone RP23-289E18 from 15, complete sequence
          Length = 184557

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 53    ccacaacctgtggttttccta 73
             |||||||||||||||||||||
Sbjct: 20828 ccacaacctgtggttttccta 20848

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>emb|AL591521.8| Human DNA sequence from clone RP5-965F6 on chromosome 1 Contains the 5'
             end of a novel gene and a thioredoxin (TXN) pseudogene,
             complete sequence
          Length = 97110

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 91    tgtacactctgccaaaggtttgtct 115
             |||||||||||||| ||||||||||
Sbjct: 75466 tgtacactctgccacaggtttgtct 75490

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>emb|AL691509.6| Mouse DNA sequence from clone RP23-222A18 on chromosome 4, complete
              sequence
          Length = 217607

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 53     ccacaacctgtggttttcctaatct 77
              |||||||||||||||| ||||||||
Sbjct: 135863 ccacaacctgtggtttacctaatct 135839

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>ref|NM_130382.1| Arabidopsis thaliana ATGPX4 (GLUTATHIONE PEROXIDASE 4); glutathione
           peroxidase AT2G48150 (ATGPX4) mRNA, complete cds
          Length = 734

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 tcttggtcggcaaagatggc 158
           ||||||||||||||||||||
Sbjct: 487 tcttggtcggcaaagatggc 506

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>ref|XM_632878.1| Dictyostelium discoideum hypothetical protein (DDB0186717), partial
           mRNA
          Length = 2679

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 77  ttacaatttttatttgtaca 96
           ||||||||||||||||||||
Sbjct: 143 ttacaatttttatttgtaca 124

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>gb|AC157569.12| Mus musculus chromosome 3, clone RP23-434M21, complete sequence
          Length = 205286

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     aatttttatttgtacactct 100
              ||||||||||||||||||||
Sbjct: 123939 aatttttatttgtacactct 123920

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>gb|AC162527.5| Mus musculus BAC clone RP23-30M17 from chromosome 14, complete sequence
          Length = 200348

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 249    cacagaagttctacaagtct 268
              ||||||||||||||||||||
Sbjct: 128812 cacagaagttctacaagtct 128831

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>gb|AC123985.10| Mus musculus chromosome 14, clone RP23-154G18, complete sequence
          Length = 229313

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 249    cacagaagttctacaagtct 268
              ||||||||||||||||||||
Sbjct: 163309 cacagaagttctacaagtct 163290

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>gb|AC069444.17| Homo sapiens 3 BAC RP11-169N13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165093

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    aaagatggcaagaaccaaag 169
              ||||||||||||||||||||
Sbjct: 125567 aaagatggcaagaaccaaag 125548

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>gb|AF364606.1| Homo sapiens orphan nuclear receptors (NR1I2) gene, complete cds,
             alternatively spliced
          Length = 86081

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   aaagatggcaagaaccaaag 169
             ||||||||||||||||||||
Sbjct: 28266 aaagatggcaagaaccaaag 28285

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>gb|AC007656.2| Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 171236

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   aaggctatatgtgaacataa 343
             ||||||||||||||||||||
Sbjct: 92582 aaggctatatgtgaacataa 92563

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>gb|AC158515.2| Mus musculus BAC clone RP24-487D11 from chromosome 9, complete sequence
          Length = 176590

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    cacaacctgtggttttccta 73
             ||||||||||||||||||||
Sbjct: 17418 cacaacctgtggttttccta 17437

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>gb|AC154592.2| Mus musculus BAC clone RP23-249J17 from chromosome 14, complete
             sequence
          Length = 211647

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     tggaaaggactctgccttgt 23
             ||||||||||||||||||||
Sbjct: 17270 tggaaaggactctgccttgt 17251

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>gb|BT003735.1| Arabidopsis thaliana At2g48150 mRNA, complete cds
          Length = 513

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 tcttggtcggcaaagatggc 158
           ||||||||||||||||||||
Sbjct: 413 tcttggtcggcaaagatggc 432

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>gb|AC129909.4| Branchiostoma floridae, clone -15I20, complete sequence
          Length = 88521

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    cctgtggttttcctaatctt 78
             ||||||||||||||||||||
Sbjct: 47653 cctgtggttttcctaatctt 47672

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>gb|AY088692.1| Arabidopsis thaliana clone 92074 mRNA, complete sequence
          Length = 734

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 tcttggtcggcaaagatggc 158
           ||||||||||||||||||||
Sbjct: 487 tcttggtcggcaaagatggc 506

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>gb|AC009299.5| Homo sapiens BAC clone RP11-26B22 from 2, complete sequence
          Length = 169697

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     atttttatttgtacactctg 101
              ||||||||||||||||||||
Sbjct: 115038 atttttatttgtacactctg 115057

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>dbj|AK118448.1| Arabidopsis thaliana At2g48150 mRNA for putative glutathione
           peroxidase, complete cds, clone: RAFL19-69-D09
          Length = 711

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 tcttggtcggcaaagatggc 158
           ||||||||||||||||||||
Sbjct: 464 tcttggtcggcaaagatggc 483

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>gb|AC156025.2| Mus musculus BAC clone RP23-71L21 from 14, complete sequence
          Length = 215610

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     tggaaaggactctgccttgt 23
             ||||||||||||||||||||
Sbjct: 53319 tggaaaggactctgccttgt 53338

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>emb|CT010509.10| Mouse DNA sequence from clone RP23-63E8 on chromosome 9, complete
              sequence
          Length = 258170

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     cacaacctgtggttttccta 73
              ||||||||||||||||||||
Sbjct: 117991 cacaacctgtggttttccta 117972

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>emb|AL845291.5| Mouse DNA sequence from clone RP23-1O11 on chromosome 2, complete
             sequence
          Length = 209914

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    atttttatttgtacactctg 101
             ||||||||||||||||||||
Sbjct: 96772 atttttatttgtacactctg 96791


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,785,709
Number of Sequences: 3902068
Number of extensions: 3785709
Number of successful extensions: 72443
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72365
Number of HSP's gapped (non-prelim): 78
length of query: 396
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 374
effective length of database: 17,147,199,772
effective search space: 6413052714728
effective search space used: 6413052714728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result