Clone Information

BLAST Search Result

Clone Name	rbastl04d01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	DRL16_ARATH (O22727) Putative disease resistance protein At1g61190	39	0.006
2	DRL17_ARATH (O64790) Putative disease resistance protein At1g61300	35	0.090
3	RPOA_WHEAT (P12073) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
4	RPOA_TAECM (Q7GED0) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
5	RPOA_SECST (P93964) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
6	RPOA_SECCE (Q6YLW2) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
7	RPOA_PSEPI (Q7H6G1) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
8	RPOA_PSAST (P93962) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
9	RPOA_PSARU (P93960) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
10	RPOA_PSAJU (Q7H6F6) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
11	RPOA_PSAFR (P92418) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
12	RPOA_HORVU (P92392) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
13	RPOA_HORMA (Q7H6J0) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
14	RPOA_HORJU (Q7H6J1) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
15	RPOA_HORBU (Q7H6J2) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
16	RPOA_HETPI (P92389) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
17	RPOA_FESSE (P93956) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
18	RPOA_FESFE (P93968) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
19	RPOA_EREDI (P93974) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
20	RPOA_ELYHY (Q8MAI8) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
21	RPOA_ELYCL (Q8MAI9) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
22	RPOA_ELYCA (Q7H6I5) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
23	RPOA_CRIDE (P92225) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
24	RPOA_BROIN (P92220) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
25	RPOA_AUSVE (P93993) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
26	RPOA_AGRCR (P92209) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
27	RPOA_AEGUN (Q8MAJ0) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
28	RPOA_AEGTA (P92429) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
29	RPOA_AEGSP (P92892) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
30	RPOA_AEGCM (Q7GED9) DNA-directed RNA polymerase alpha chain (EC ...	34	0.15
31	DRL19_ARATH (Q9C8T9) Putative disease resistance protein At1g63350	33	0.45
32	DRL1_ARATH (P60838) Probable disease resistance protein At1g12280	32	0.58
33	RPOA_THIBE (P92439) DNA-directed RNA polymerase alpha chain (EC ...	32	0.99
34	RPOA_LOPEL (Q8MAI6) DNA-directed RNA polymerase alpha chain (EC ...	32	0.99
35	DRL15_ARATH (Q940K0) Probable disease resistance protein At1g61180	31	1.7
36	BRLF1_EBV (P03209) Transcription activator BRLF1	30	2.2
37	RGA3_SOLBU (Q7XA40) Putative disease resistance protein RGA3 (RG...	30	3.8
38	RPOA_SACOF (Q6ENT2) DNA-directed RNA polymerase alpha chain (EC ...	30	3.8
39	RPOA_SACHY (Q6L370) DNA-directed RNA polymerase alpha chain (EC ...	30	3.8
40	RPOA_MAIZE (P09562) DNA-directed RNA polymerase alpha chain (EC ...	30	3.8
41	CADH4_XENLA (P79883) Cadherin-4 precursor (Maternally expressed ...	30	3.8
42	DRL18_ARATH (O64789) Putative disease resistance protein At1g61310	29	4.9
43	DRL20_ARATH (Q9SH22) Putative disease resistance protein At1g63360	29	6.4
44	DRL24_ARATH (O23317) Probable disease resistance protein At4g146...	29	6.4
45	CT075_MOUSE (P59383) Protein C20orf75 homolog precursor	29	6.4
46	RS3_RALEJ (Q46WF0) 30S ribosomal protein S3	28	8.4

>DRL16_ARATH (O22727) Putative disease resistance protein At1g61190|
          Length = 967

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 20/50 (40%), Positives = 31/50 (62%)
 Frame = -1

Query: 439 EQAAGTCKVITPFPKLKELYLHGLPRLGALSGSACMLRFPSLKSLKIVDC 290
           E+A     +ITPF KL+ L+L+GLP+L ++  S   L FP L ++ +  C
Sbjct: 785 EKAINLTSIITPFQKLERLFLYGLPKLESIYWSP--LPFPLLSNIVVKYC 832

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>DRL17_ARATH (O64790) Putative disease resistance protein At1g61300|
          Length = 766

 Score = 35.0 bits (79), Expect = 0.090
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = -1

Query: 442 DEQAAGTCKVITPFPKLKELYLHGLPRLGALSGSACMLRFPSLKSLKIVDC 290
           +++ A     ITPF KL+ L L+ LP+L ++  S   L FP L  + ++DC
Sbjct: 665 NKEKATNLTSITPFLKLERLILYNLPKLESIYWSP--LHFPRLLIIHVLDC 713

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>RPOA_WHEAT (P12073) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_TAECM (Q7GED0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_SECST (P93964) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_SECCE (Q6YLW2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_PSEPI (Q7H6G1) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_PSAST (P93962) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_PSARU (P93960) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_PSAJU (Q7H6F6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_PSAFR (P92418) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_HORVU (P92392) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_HORMA (Q7H6J0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_HORJU (Q7H6J1) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_HORBU (Q7H6J2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_HETPI (P92389) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_FESSE (P93956) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_FESFE (P93968) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_EREDI (P93974) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_ELYHY (Q8MAI8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_ELYCL (Q8MAI9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_ELYCA (Q7H6I5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_CRIDE (P92225) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_BROIN (P92220) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_AUSVE (P93993) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_AGRCR (P92209) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_AEGUN (Q8MAJ0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_AEGTA (P92429) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_AEGSP (P92892) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>RPOA_AEGCM (Q7GED9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPPLF F
Sbjct: 239 FEENKNRFTPPLFTF 253

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>DRL19_ARATH (Q9C8T9) Putative disease resistance protein At1g63350|
          Length = 898

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -1

Query: 412 ITPFPKLKELYLHGLPRLGALSGSACMLRFPSLKSLKIVDC 290
           I PFPKL EL+L+ L  L  +  S   L FP L+ + ++ C
Sbjct: 788 IVPFPKLNELHLYNLRELKNIYWSP--LPFPCLEKINVMGC 826

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>DRL1_ARATH (P60838) Probable disease resistance protein At1g12280|
          Length = 894

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = -1

Query: 442 DEQAAGTCKVITPFPKLKELYLHGLPRLGALSGSACMLRFPSLKSLKIVDC 290
           +++ A T   I PF KL+ L LH L  L ++      L FP LK++ I  C
Sbjct: 786 NQEKAMTMSGIIPFQKLESLRLHNLAMLRSIYWQP--LSFPCLKTIHITKC 834

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>RPOA_THIBE (P92439) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPP F F
Sbjct: 239 FEENKNRFTPPPFTF 253

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>RPOA_LOPEL (Q8MAI6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNRFTPP F F
Sbjct: 239 FEENKNRFTPPPFTF 253

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>DRL15_ARATH (Q940K0) Probable disease resistance protein At1g61180|
          Length = 889

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 18/51 (35%), Positives = 30/51 (58%)
 Frame = -1

Query: 442 DEQAAGTCKVITPFPKLKELYLHGLPRLGALSGSACMLRFPSLKSLKIVDC 290
           +++ A     ITPF KL+ L L+ LP+L ++  S   L FP L ++ + +C
Sbjct: 777 NKEKATNLTSITPFLKLEWLILYNLPKLESIYWSP--LPFPVLLTMDVSNC 825

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>BRLF1_EBV (P03209) Transcription activator BRLF1|
          Length = 605

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 353 AERQRMHAAVPVIEEPQDRRLSKPQEAQTRC 261
           +ER+   A  P +  P+ RR S+P   QT C
Sbjct: 342 SEREEARAEAPRLRAPKSRRTSRPNRGQTPC 372

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>RGA3_SOLBU (Q7XA40) Putative disease resistance protein RGA3 (RGA1-blb)|
           (Blight resistance protein B149)
          Length = 947

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 403 FPKLKELYLHGLPRLGALSGSACMLRFPSLKSLKIVDC 290
           FP L++L++ G   L  L       +FP L+ +KI DC
Sbjct: 787 FPSLRKLHIGGFCNLKGLQRMKGAEQFPVLEEMKISDC 824

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>RPOA_SACOF (Q6ENT2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNR TPPL  F
Sbjct: 239 FEENKNRLTPPLLTF 253

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>RPOA_SACHY (Q6L370) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNR TPPL  F
Sbjct: 239 FEENKNRLTPPLLTF 253

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>RPOA_MAIZE (P09562) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 339

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = -3

Query: 47  FEENKNRFTPPLFYF 3
           FEENKNR TPPL  F
Sbjct: 239 FEENKNRLTPPLLTF 253

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>CADH4_XENLA (P79883) Cadherin-4 precursor (Maternally expressed neural|
           cadherin) (XmN-cadherin)
          Length = 922

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 389 GTVSPWPTKARGAERQRMHAAVPVIEEPQDRRLSKPQE 276
           GT+ PW    +G  RQ+    +P +  P++ R   PQ+
Sbjct: 158 GTLLPWRQHHKGLRRQKRDWVIPPVNVPENSRGPFPQQ 195

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>DRL18_ARATH (O64789) Putative disease resistance protein At1g61310|
          Length = 925

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = -1

Query: 442 DEQAAGTCKVITPFPKLKELYLHGLPRLGALSGSACMLRFPSLKSLKIVDC 290
           +++ A     ITPF KL+ L L  LP+L ++  S   L FP L ++ + +C
Sbjct: 790 NKEKATNLTSITPFLKLERLILCYLPKLESIYWSP--LPFPLLLNIDVEEC 838

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>DRL20_ARATH (Q9SH22) Putative disease resistance protein At1g63360|
          Length = 884

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -1

Query: 448 DEDEQAAGTCKVITPFPKLKELYLHGLPRLGALSGSACMLRFPSLKSLKIVDC 290
           +E++   G    I PFP+L  L LH LP+L  +      L F  L+ + I +C
Sbjct: 780 NEEKACEGEESGILPFPELNFLTLHDLPKLKKIYWRP--LPFLCLEEINIREC 830

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>DRL24_ARATH (O23317) Probable disease resistance protein At4g14610 (pCol1)|
          Length = 719

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 21/53 (39%), Positives = 29/53 (54%)
 Frame = -1

Query: 457 AAADEDEQAAGTCKVITPFPKLKELYLHGLPRLGALSGSACMLRFPSLKSLKI 299
           AA+  DE A+    +I PF KL+ L L  LP+L ++  S   L FP L  L +
Sbjct: 617 AASVTDENAS----IIIPFQKLECLSLSDLPKLKSIYWSP--LSFPRLSELAV 663

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>CT075_MOUSE (P59383) Protein C20orf75 homolog precursor|
          Length = 733

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 412 ITPFPKLKELYLHGLPRLGALSGSACMLRFPSLKSLKIVDC 290
           I   PKLK L+L  +PRL  L G      F    +L+ +DC
Sbjct: 226 IRNLPKLKSLFLRKMPRLKTLEGDI----FKMTPNLRQLDC 262

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>RS3_RALEJ (Q46WF0) 30S ribosomal protein S3|
          Length = 264

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 323 PVIEEPQDRRLSKPQEAQTRCRGTEG 246
           PV+EEPQD R  +P   + R R  EG
Sbjct: 214 PVVEEPQDDRRRRPGRPEGRRREGEG 239


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,615,384
Number of Sequences: 219361
Number of extensions: 1014155
Number of successful extensions: 2776
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 2724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2776
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result