Clone Name	rbastl04d01
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	ref|NM_190848.1| Oryza sativa (japonica cultivar-group), predic...	82	2e-12
2	gb|AY362785.1| Elymus repens clone Elyrep6 RNA polymerase alpha ...	82	2e-12
3	gb|AY362784.1| Elymus repens clone Elyrep5 RNA polymerase alpha ...	82	2e-12
4	gb|AY362783.1| Elymus repens clone Elyrep4 RNA polymerase alpha ...	82	2e-12
5	gb|AY362782.1| Elymus repens clone Elyrep3 RNA polymerase alpha ...	82	2e-12
6	gb|AY362781.1| Elymus repens clone Elyrep2 RNA polymerase alpha ...	82	2e-12
7	gb|AY362780.1| Elymus repens clone Elyrep1 RNA polymerase alpha ...	82	2e-12
8	gb|AY115968.1| Psathyrostachys juncea RNA polymerase alpha subun...	82	2e-12
9	gb|AY115967.1| Psathyrostachys fragilis RNA polymerase alpha sub...	82	2e-12
10	gb|AY115963.1| Taeniatherum caput-medusae RNA polymerase alpha s...	82	2e-12
11	gb|AY115962.1| Secale montanum clone Secmon2-PI206991 RNA polyme...	82	2e-12
12	gb|AY115961.1| Secale cereale RNA polymerase alpha subunit (rpoA...	82	2e-12
13	gb|AY115960.1| Secale montanum clone Secmon1-PI440654 RNA polyme...	82	2e-12
14	gb|AY115959.1| Pseudoroegneria spicata clone Psespi8-D2839 RNA p...	82	2e-12
15	gb|AY115958.1| Pseudoroegneria spicata clone Psespi4-D2844 RNA p...	82	2e-12
16	gb|AY115957.1| Pseudoroegneria spicata clone Psespi3-PI610986 RN...	82	2e-12
17	gb|AY115956.1| Pseudoroegneria spicata clone Psespi2-PI236681 RN...	82	2e-12
18	gb|AY115955.1| Pseudoroegneria libanotica RNA polymerase alpha s...	82	2e-12
19	gb|AY115954.1| Pseudoroegneria strigosa clone Psestr2-PI531755 R...	82	2e-12
20	gb|AY115953.1| Pseudoroegneria strigosa clone Psestr1-MA-109-31-...	82	2e-12
21	gb|AY115952.1| Peridictyon sanctum RNA polymerase alpha subunit ...	82	2e-12
22	gb|AY115951.1| Heteranthelium piliferum RNA polymerase alpha sub...	82	2e-12
23	gb|AY115950.1| Henrardia persica RNA polymerase alpha subunit (r...	82	2e-12
24	gb|AY115949.1| Eremopyrum orientale clone Ereori-H5555 RNA polym...	82	2e-12
25	gb|AY115948.1| Eremopyrum orientale clone Eredis-H5555 RNA polym...	82	2e-12
26	gb|AY115947.1| Eremopyrum bonaepartis clone Erebon2-H5569 RNA po...	82	2e-12
27	gb|AY115946.1| Eremopyrum bonaepartis clone Erebon1-H5554 RNA po...	82	2e-12
28	gb|AY115945.1| Elymus wawawaiensis clone Elywaw3-PI598812 RNA po...	82	2e-12
29	gb|AY115944.1| Elymus wawawaiensis clone Elywaw1-PI285272 RNA po...	82	2e-12
30	gb|AY115943.1| Elymus virginicus clone Elyvir6-RJMG163 RNA polym...	82	2e-12
31	gb|AY115942.1| Elymus virginicus clone Elyvir2-PI490361 RNA poly...	82	2e-12
32	gb|AY115941.1| Elymus virginicus clone Elyvir1-PI436945 RNA poly...	82	2e-12
33	gb|AY115940.1| Elymus trachycaulus clone Elytra3-PI452446 RNA po...	82	2e-12
34	gb|AY115939.1| Elymus trachycaulus clone Elytra1-PI372500 RNA po...	82	2e-12
35	gb|AY115938.1| Elymus lanceolatus clone Elylan3-PI531623 RNA pol...	82	2e-12
36	gb|AY115937.1| Elymus lanceolatus clone Elylan1-R-13-6-10 RNA po...	82	2e-12
37	gb|AY115936.1| Elymus hystrix RNA polymerase alpha subunit (rpoA...	82	2e-12
38	gb|AY115935.1| Elymus glaucus clone Elygla7-PI593652 RNA polymer...	82	2e-12
39	gb|AY115934.1| Elymus glaucus clone Elygla6-W610215 RNA polymera...	82	2e-12
40	gb|AY115933.1| Elymus glaucus clone Elygla4-RJMG130 RNA polymera...	82	2e-12
41	gb|AY115932.1| Elymus elymoides RNA polymerase alpha subunit (rp...	82	2e-12
42	gb|AY115931.1| Elymus ciliaris RNA polymerase alpha subunit (rpo...	82	2e-12
43	gb|AY115930.1| Elymus canadensis clone Elycan4-PI531568 RNA poly...	82	2e-12
44	gb|AY115929.1| Elymus canadensis clone Elycan2-PI578675 RNA poly...	82	2e-12
45	gb|AY115928.1| Elymus canadensis clone Elycan1-MEBarkworth97-86 ...	82	2e-12
46	gb|AY115927.1| Elymus californicus RNA polymerase alpha subunit ...	82	2e-12
47	gb|AY115926.1| Haynaldia villosa clone Dasvil2-PI470279 RNA poly...	82	2e-12
48	gb|AY115925.1| Haynaldia villosa clone Dasvil1-PI251478 RNA poly...	82	2e-12
49	gb|AY115924.1| Hordeum pusillum RNA polymerase alpha subunit (rp...	82	2e-12
50	gb|AY115923.1| Hordeum murinum clone Hormur2-CIho15683 RNA polym...	82	2e-12
51	gb|AY115922.1| Hordeum murinum clone Hormur1-PI247054 RNA polyme...	82	2e-12
52	gb|AY115921.1| Hordeum marinum RNA polymerase alpha subunit (rpo...	82	2e-12
53	gb|AY115920.1| Hordeum jubatum RNA polymerase alpha subunit (rpo...	82	2e-12
54	gb|AY115919.1| Hordeum bulbosum RNA polymerase alpha subunit (rp...	82	2e-12
55	gb|AY115918.1| Hordeum brevisubulatum RNA polymerase alpha subun...	82	2e-12
56	gb|AY115917.1| Hordeum brachyantherum RNA polymerase alpha subun...	82	2e-12
57	gb|AY115916.1| Australopyrum velutinum RNA polymerase alpha subu...	82	2e-12
58	gb|AY115915.1| Australopyrum retrofractum RNA polymerase alpha s...	82	2e-12
59	gb|AY115914.1| Agropyron mongolicum RNA polymerase alpha subunit...	82	2e-12
60	gb|AY115913.1| Agropyron cristatum clone Agrcri2-PI281862 RNA po...	82	2e-12
61	gb|AY115912.1| Agropyron cristatum clone Agrcri1-C-3-6-10 RNA po...	82	2e-12
62	gb|AY115911.1| Aegilops uniaristata RNA polymerase alpha subunit...	82	2e-12
63	gb|AY115910.1| Aegilops tauschii RNA polymerase alpha subunit (r...	82	2e-12
64	gb|AY115909.1| Aegilops speltoides RNA polymerase alpha subunit ...	82	2e-12
65	gb|AY115908.1| Aegilops markgrafii RNA polymerase alpha subunit ...	82	2e-12
66	gb|DQ159335.1| Elymus mutabilis RNA polymerase subunit a (rpoA) ...	82	2e-12
67	gb|DQ159334.1| Elymus dentatus RNA polymerase subunit a (rpoA) g...	82	2e-12
68	gb|DQ159333.1| Elymus caucasicus RNA polymerase subunit a (rpoA)...	82	2e-12
69	gb|DQ159332.1| Elymus abolinii RNA polymerase subunit a (rpoA) g...	82	2e-12
70	emb|Z79501.1|FSZ79501 Festucopsis serpentini chloroplast rpoA gene	82	2e-12
71	emb|Z79500.1|HEZ79500 H.erectifolium chloroplast rpoA gene	82	2e-12
72	emb|Z77771.1|ACZ77771 A.cristatum chloroplast rpoA gene	82	2e-12
73	emb|Z77770.1|FFZ77770 F.festucoides chloroplast rpoA gene	82	2e-12
74	emb|Z77768.1|AVZ77768 A.velutinum chloroplast rpoA gene	82	2e-12
75	emb|Z77767.1|ARZ77767 A.retrofractum chloroplast rpoA gene	82	2e-12
76	emb|Z77766.1|SSZ77766 S.speltoides chloroplast rpoA gene	82	2e-12
77	emb|Z77765.1|SSZ77765 S.strictum chloroplast rpoA gene	82	2e-12
78	emb|Z77764.1|HVZ77764 H.vulgare chloroplast rpoA gene	82	2e-12
79	emb|Z77763.1|HMZ77763 Hordeum marinum subsp. gussoneanum chlorop...	82	2e-12
80	emb|Z77762.1|HMZ77762 Hordeum murinum subsp. glaucum chloroplast...	82	2e-12
81	emb|Z77761.1|HBZ77761 H.brachyantherum chloroplast rpoA gene	82	2e-12
82	emb|Z77760.1|TCZ77760 T.caput-medusae chloroplast rpoA gene	82	2e-12
83	emb|Z77759.1|BIZ77759 B.inermis chloroplast rpoA gene	82	2e-12
84	emb|Z77758.1|PTZ77758 P.tauschii chloroplast rpoA gene	82	2e-12
85	emb|Z77757.1|CMZ77757 C.monococcum chloroplast rpoA gene	82	2e-12
86	emb|Z77756.1|AMZ77756 A.muticum chloroplast rpoA gene	82	2e-12
87	emb|Z77755.1|PRZ77755 P.rupestris chloroplast rpoA gene	82	2e-12
88	emb|Z77754.1|PSZ77754 P.stoloniformis chloroplast rpoA gene	82	2e-12
89	emb|Z77753.1|PFZ77753 Psathyrostachys fragilis subsp. villosus c...	82	2e-12
90	emb|Z77752.1|PFZ77752 Psathyrostachys fragilis subsp. fragilis c...	82	2e-12
91	emb|Z77751.1|CDZ77751 C.delileana chloroplast rpoA gene	82	2e-12
92	emb|Z77750.1|HPZ77750 H.piliferum chloroplast rpoA gene	82	2e-12
93	emb|Z77749.1|PSZ77749 P.sanctum chloroplast rpoA gene	82	2e-12
94	emb|Z77748.1|HPZ77748 H.persica chloroplast rpoA gene	82	2e-12
95	emb|Z77746.1|ETZ77746 E.triticeum chloroplast rpoA gene	82	2e-12
96	emb|Z77745.1|EDZ77745 E.distans chloroplast rpoA gene	82	2e-12
97	emb|Z77744.1|PSZ77744 P.spicata chloroplast rpoA gene	82	2e-12
98	emb|Z77743.1|LEZ77743 Elytrigia elongata chloroplast rpoA gene	82	2e-12
99	emb|Z77742.1|CCZ77742 C.comosum chloroplast rpoA gene	82	2e-12
100	emb|Z77741.1|DVZ77741 D.villosum chloroplast rpoA gene	82	2e-12
101	emb|X15595.1|CHTARPOA Wheat chloroplast rpoA gene for RNA polyme...	82	2e-12
102	dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...	82	2e-12
103	gb|AY607071.1| Psathyrostachys caduca voucher H6702 RNA polymera...	82	2e-12
104	gb|AY607070.1| Psathyrostachys rupestris subsp. rupestris vouche...	82	2e-12
105	gb|AY607069.1| Psathyrostachys caduca voucher H6700 RNA polymera...	82	2e-12
106	gb|AY607068.1| Psathyrostachys huashanica voucher H3087 RNA poly...	82	2e-12
107	gb|AY607067.1| Psathyrostachys fragilis subsp. villosus voucher ...	82	2e-12
108	gb|AY607066.1| Psathyrostachys fragilis subsp. villosus voucher ...	82	2e-12
109	gb|AY607065.1| Psathyrostachys fragilis subsp. secaliformis vouc...	82	2e-12
110	gb|AY607063.1| Psathyrostachys lanuginosa isolate B voucher H880...	82	2e-12
111	gb|AY607062.1| Psathyrostachys lanuginosa isolate A voucher H880...	82	2e-12
112	gb|AY607061.1| Psathyrostachys juncea voucher H7544 RNA polymera...	82	2e-12
113	dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic D...	82	2e-12
114	dbj|AK120325.1| Oryza sativa (japonica cultivar-group) cDNA clon...	82	2e-12
115	dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome	82	2e-12
116	gb|AY607064.1| Psathyrostachys lanuginosa isolate C voucher H880...	80	7e-12
117	gb|AY115966.1| Thinopyrum scirpeum RNA polymerase alpha subunit ...	74	4e-10
118	gb|AY115965.1| Lophopyrum elongatum RNA polymerase alpha subunit...	74	4e-10
119	gb|AY115964.1| Thinopyrum bessarabicum RNA polymerase alpha subu...	74	4e-10
120	emb|Z77769.1|TBZ77769 T.bessarabicum chloroplast rpoA gene	74	4e-10
121	gb|BT018701.1| Zea mays clone EL01N0515A02.d mRNA sequence	72	2e-09
122	emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome	72	2e-09
123	emb|X07810.1|CHZMRPOA Zea mays chloroplast rpoA gene for RNA pol...	72	2e-09
124	gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast,...	72	2e-09
125	gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome	72	2e-09
126	dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete ...	72	2e-09
127	gb|DQ069432.1| Yucca schidigera RNA polymerase alpha chain (rpoA...	64	4e-07
128	gb|DQ289180.1| Oryza granulata RNA polymerase subunit (rpoA) gen...	64	4e-07
129	gb|DQ289179.1| Oryza australiensis RNA polymerase subunit (rpoA)...	64	4e-07
130	gb|DQ289178.1| Oryza punctata RNA polymerase subunit (rpoA) gene...	64	4e-07
131	gb|DQ289176.1| Oryza officinalis RNA polymerase subunit (rpoA) g...	64	4e-07
132	gb|DQ069431.1| Typha latifolia RNA polymerase alpha chain (rpoA)...	62	2e-06
133	ref|XM_481020.1| Oryza sativa (japonica cultivar-group), mRNA	56	1e-04
134	ref|XM_475049.1| Oryza sativa (japonica cultivar-group), predic...	56	1e-04
135	ref|NM_190858.1| Oryza sativa (japonica cultivar-group), predic...	56	1e-04
136	gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar N...	56	1e-04
137	gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA...	56	1e-04
138	gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-1...	56	1e-04
139	emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chlor...	56	1e-04
140	emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4,...	56	1e-04
141	gb|DQ289177.1| Oryza rhizomatis RNA polymerase subunit (rpoA) ge...	56	1e-04
142	gb|DQ289175.1| Oryza sp. IRGC 81916 RNA polymerase subunit (rpoA...	56	1e-04
143	gb|DQ289174.1| Oryza glumipatula RNA polymerase subunit (rpoA) g...	56	1e-04
144	gb|DQ289173.1| Oryza nivara RNA polymerase subunit (rpoA) gene, ...	56	1e-04
145	gb|DQ289172.1| Oryza sativa RNA polymerase subunit (rpoA) gene, ...	56	1e-04
146	gb|DQ289171.1| Oryza sativa RNA polymerase subunit (rpoA) gene, ...	56	1e-04
147	gb|DQ289170.1| Oryza sativa RNA polymerase subunit (rpoA) gene, ...	56	1e-04
148	dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...	56	1e-04
149	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	56	1e-04
150	dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...	56	1e-04
151	dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...	56	1e-04
152	dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic D...	56	1e-04
153	dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic D...	56	1e-04
154	dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic D...	56	1e-04
155	dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic D...	56	1e-04
156	dbj|AK066307.1| Oryza sativa (japonica cultivar-group) cDNA clon...	56	1e-04
157	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	56	1e-04
158	emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb...	56	1e-04
159	dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome	56	1e-04
160	dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...	50	0.006
161	dbj|AP005590.3| Oryza sativa (japonica cultivar-group) genomic D...	50	0.006
162	dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic D...	50	0.006
163	ref|NM_195997.1| Oryza sativa (japonica cultivar-group) putative...	48	0.025
164	gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome...	48	0.025
165	gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, c...	48	0.025
166	dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D...	48	0.025
167	gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome...	48	0.025
168	gb|AC153152.4| Mus musculus BAC clone RP23-78F1 from chromosome ...	44	0.39
169	ref|XM_982602.1| PREDICTED: Mus musculus RIKEN cDNA 4930573I19 g...	44	0.39
170	ref|XM_914904.2| PREDICTED: Mus musculus RIKEN cDNA 4930573I19 g...	44	0.39
171	ref|XM_894845.2| PREDICTED: Mus musculus RIKEN cDNA 4930573I19 g...	44	0.39
172	ref|XM_127142.8| PREDICTED: Mus musculus RIKEN cDNA 4930573I19 g...	44	0.39
173	gb|BC041778.1| Mus musculus RIKEN cDNA 4930573I19 gene, mRNA (cD...	44	0.39
174	gb|AC101875.7| Mus musculus chromosome 12, clone RP23-367G12, co...	44	0.39
175	dbj|AK147592.1| Mus musculus cDNA, RIKEN full-length enriched li...	44	0.39
176	dbj|AK031736.1| Mus musculus 13 days embryo male testis cDNA, RI...	44	0.39
177	dbj|AK129113.1| Mus musculus mRNA for mKIAA0297 protein	44	0.39
178	gb|AC161468.2| Gallus gallus BAC clone CH261-94J19 from chromoso...	44	0.39
179	gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3	42	1.6
180	emb|BX510655.18| Zebrafish DNA sequence from clone DKEY-94J16 in...	42	1.6
181	emb|BX927207.8| Zebrafish DNA sequence from clone DKEY-72K22 in ...	42	1.6
182	gb|AC018529.12| Homo sapiens, clone RP11-4B16, complete sequence	42	1.6
183	gb|AC100863.2| Homo sapiens chromosome 18, clone RP11-751H17, co...	42	1.6
184	emb|BX957226.10| Zebrafish DNA sequence from clone CH211-110P13 ...	42	1.6
185	emb|BX511256.9| Zebrafish DNA sequence from clone DKEY-58M10 in ...	42	1.6
186	dbj|AK128542.1| Homo sapiens cDNA FLJ46701 fis, clone TRACH3014063	42	1.6
187	ref|NM_170188.1| Drosophila melanogaster CG6422-RB, transcript v...	42	1.6
188	gb|AC105937.2| Homo sapiens chromosome 3 clone RP11-45J19, compl...	42	1.6
189	ref|NM_143065.2| Drosophila melanogaster CG6422-RA, transcript v...	42	1.6
190	gb|AY069675.1| Drosophila melanogaster LD44979 full length cDNA	42	1.6
191	gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nippon...	42	1.6
192	dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
193	gb|AC007853.4|AC007853 Drosophila melanogaster, chromosome 3R, r...	42	1.6
194	gb|AC008206.10|AC008206 Drosophila melanogaster, chromosome 3R, ...	42	1.6
195	gb|AC009969.10| Homo sapiens BAC clone RP11-418G17 from 2, compl...	42	1.6
196	gb|AC009948.3| Homo sapiens BAC clone RP11-65L3 from 2, complete...	42	1.6
197	gb|AE003750.2| Drosophila melanogaster chromosome 3R, section 88...	42	1.6
198	gb|BT001679.1| Drosophila melanogaster RE55836 full insert cDNA	42	1.6
199	gb|AY757818.1| Acorus gramineus RpoA (rpoA) gene, complete cds; ...	40	6.2
200	ref|NM_183985.1| Oryza sativa (japonica cultivar-group), predic...	40	6.2
201	gb|CP000081.1| Leishmania major chromosome 35, complete sequence	40	6.2
202	gb|DQ069427.1| Acorus americanus RNA polymerase alpha chain (rpo...	40	6.2
203	gb|AC126245.3| Mus musculus BAC clone RP24-354D8 from chromosome...	40	6.2
204	ref|XM_838121.1| Leishmania major strain Friedlin protein kinase...	40	6.2
205	emb|AL136181.13| Human DNA sequence from clone RP11-35J23 on chr...	40	6.2
206	gb|AC091948.3| Homo sapiens chromosome 5 clone RP11-373N22, comp...	40	6.2
207	gb|AF532117.1| Mus musculus strain 129/SvJ BAC clone citb9k22 fr...	40	6.2
208	dbj|BA000027.2| Oryzias latipes DNA, MHC Class I Region	40	6.2
209	dbj|AP003205.3| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
210	dbj|AP003336.3| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
211	gb|AC154819.2| Mus musculus BAC clone RP24-535A1 from 17, comple...	40	6.2
212	emb|AL935132.13| Mouse DNA sequence from clone RP23-8G23 on chro...	40	6.2
213	emb|AJ879453.1| Acorus calamus chloroplast, complete genome	40	6.2
214	emb|AL606498.17| Mouse DNA sequence from clone RP23-197C15 on ch...	40	6.2

---

>ref|NM_190848.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3018

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                        
Query: 164  acggatcagtggctcgtaagatgctttgacctcatcatcatcccactccaacccatccca 223
            ||||| |||||| ||||||||||||||||| ||  ||||||||||||||||| |||||||
Sbjct: 3006 acggaacagtggatcgtaagatgctttgacttcggcatcatcccactccaacgcatccca 2947

                     
Query: 224  ccagtccct 232
            ||| |||||
Sbjct: 2946 ccactccct 2938



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 59/69 (85%)
 Strand = Plus / Minus

                                                                        
Query: 371  gccatggagatacagttccttaagtttagggaagggcgtgatcactttgcaagtccctgc 430
            |||||||||||||||||| || || ||||||||||| |||||  || ||||| | | |||
Sbjct: 2799 gccatggagatacagttctttgaggttagggaagggtgtgatgtctctgcaaattcttgc 2740

                     
Query: 431  agcttgttc 439
            |||||||||
Sbjct: 2739 agcttgttc 2731

---

>gb|AY362785.1| Elymus repens clone Elyrep6 RNA polymerase alpha subunit (rpoA)
           gene, complete cds; chloroplast gene for chloroplast
           product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY362784.1| Elymus repens clone Elyrep5 RNA polymerase alpha subunit (rpoA)
           gene, complete cds; chloroplast gene for chloroplast
           product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY362783.1| Elymus repens clone Elyrep4 RNA polymerase alpha subunit (rpoA)
           gene, complete cds; chloroplast gene for chloroplast
           product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY362782.1| Elymus repens clone Elyrep3 RNA polymerase alpha subunit (rpoA)
           gene, complete cds; chloroplast gene for chloroplast
           product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY362781.1| Elymus repens clone Elyrep2 RNA polymerase alpha subunit (rpoA)
           gene, complete cds; chloroplast gene for chloroplast
           product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY362780.1| Elymus repens clone Elyrep1 RNA polymerase alpha subunit (rpoA)
           gene, complete cds; chloroplast gene for chloroplast
           product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115968.1| Psathyrostachys juncea RNA polymerase alpha subunit (rpoA) gene,
           complete cds; chloroplast gene for chloroplast product
          Length = 1356

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115967.1| Psathyrostachys fragilis RNA polymerase alpha subunit (rpoA) gene,
           complete cds; chloroplast gene for chloroplast product
          Length = 1355

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 807

---

>gb|AY115963.1| Taeniatherum caput-medusae RNA polymerase alpha subunit (rpoA)
           gene, complete cds; chloroplast gene for chloroplast
           product
          Length = 1352

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 813

---

>gb|AY115962.1| Secale montanum clone Secmon2-PI206991 RNA polymerase alpha subunit
           (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1352

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 813

---

>gb|AY115961.1| Secale cereale RNA polymerase alpha subunit (rpoA) gene, complete
           cds; chloroplast gene for chloroplast product
          Length = 1352

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 813

---

>gb|AY115960.1| Secale montanum clone Secmon1-PI440654 RNA polymerase alpha subunit
           (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1352

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 813

---

>gb|AY115959.1| Pseudoroegneria spicata clone Psespi8-D2839 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115958.1| Pseudoroegneria spicata clone Psespi4-D2844 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115957.1| Pseudoroegneria spicata clone Psespi3-PI610986 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115956.1| Pseudoroegneria spicata clone Psespi2-PI236681 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1341

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 795

---

>gb|AY115955.1| Pseudoroegneria libanotica RNA polymerase alpha subunit (rpoA)
           gene, complete cds; chloroplast gene for chloroplast
           product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115954.1| Pseudoroegneria strigosa clone Psestr2-PI531755 RNA polymerase
           alpha subunit (rpoA) gene, complete cds; chloroplast
           gene for chloroplast product
          Length = 1347

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115953.1| Pseudoroegneria strigosa clone Psestr1-MA-109-31-50 RNA polymerase
           alpha subunit (rpoA) gene, complete cds; chloroplast
           gene for chloroplast product
          Length = 1347

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115952.1| Peridictyon sanctum RNA polymerase alpha subunit (rpoA) gene,
           complete cds; chloroplast gene for chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115951.1| Heteranthelium piliferum RNA polymerase alpha subunit (rpoA) gene,
           complete cds; chloroplast gene for chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115950.1| Henrardia persica RNA polymerase alpha subunit (rpoA) gene,
           complete cds; chloroplast gene for chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115949.1| Eremopyrum orientale clone Ereori-H5555 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1355

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115948.1| Eremopyrum orientale clone Eredis-H5555 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1355

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115947.1| Eremopyrum bonaepartis clone Erebon2-H5569 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115946.1| Eremopyrum bonaepartis clone Erebon1-H5554 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1355

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115945.1| Elymus wawawaiensis clone Elywaw3-PI598812 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115944.1| Elymus wawawaiensis clone Elywaw1-PI285272 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115943.1| Elymus virginicus clone Elyvir6-RJMG163 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115942.1| Elymus virginicus clone Elyvir2-PI490361 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115941.1| Elymus virginicus clone Elyvir1-PI436945 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115940.1| Elymus trachycaulus clone Elytra3-PI452446 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115939.1| Elymus trachycaulus clone Elytra1-PI372500 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115938.1| Elymus lanceolatus clone Elylan3-PI531623 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115937.1| Elymus lanceolatus clone Elylan1-R-13-6-10 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115936.1| Elymus hystrix RNA polymerase alpha subunit (rpoA) gene, complete
           cds; chloroplast gene for chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115935.1| Elymus glaucus clone Elygla7-PI593652 RNA polymerase alpha subunit
           (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115934.1| Elymus glaucus clone Elygla6-W610215 RNA polymerase alpha subunit
           (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115933.1| Elymus glaucus clone Elygla4-RJMG130 RNA polymerase alpha subunit
           (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115932.1| Elymus elymoides RNA polymerase alpha subunit (rpoA) gene, complete
           cds; chloroplast gene for chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115931.1| Elymus ciliaris RNA polymerase alpha subunit (rpoA) gene, complete
           cds; chloroplast gene for chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115930.1| Elymus canadensis clone Elycan4-PI531568 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115929.1| Elymus canadensis clone Elycan2-PI578675 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115928.1| Elymus canadensis clone Elycan1-MEBarkworth97-86 RNA polymerase
           alpha subunit (rpoA) gene, complete cds; chloroplast
           gene for chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115927.1| Elymus californicus RNA polymerase alpha subunit (rpoA) gene,
           complete cds; chloroplast gene for chloroplast product
          Length = 1355

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115926.1| Haynaldia villosa clone Dasvil2-PI470279 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115925.1| Haynaldia villosa clone Dasvil1-PI251478 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115924.1| Hordeum pusillum RNA polymerase alpha subunit (rpoA) gene, complete
           cds; chloroplast gene for chloroplast product
          Length = 1367

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115923.1| Hordeum murinum clone Hormur2-CIho15683 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115922.1| Hordeum murinum clone Hormur1-PI247054 RNA polymerase alpha subunit
           (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115921.1| Hordeum marinum RNA polymerase alpha subunit (rpoA) gene, complete
           cds; chloroplast gene for chloroplast product
          Length = 1361

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115920.1| Hordeum jubatum RNA polymerase alpha subunit (rpoA) gene, complete
           cds; chloroplast gene for chloroplast product
          Length = 1367

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115919.1| Hordeum bulbosum RNA polymerase alpha subunit (rpoA) gene, complete
           cds; chloroplast gene for chloroplast product
          Length = 1368

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115918.1| Hordeum brevisubulatum RNA polymerase alpha subunit (rpoA) gene,
           complete cds; chloroplast gene for chloroplast product
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115917.1| Hordeum brachyantherum RNA polymerase alpha subunit (rpoA) gene,
           complete cds; chloroplast gene for chloroplast product
          Length = 1367

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115916.1| Australopyrum velutinum RNA polymerase alpha subunit (rpoA) gene,
           complete cds; chloroplast gene for chloroplast product
          Length = 1355

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115915.1| Australopyrum retrofractum RNA polymerase alpha subunit (rpoA)
           gene, complete cds; chloroplast gene for chloroplast
           product
          Length = 1355

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115914.1| Agropyron mongolicum RNA polymerase alpha subunit (rpoA) gene,
           complete cds; chloroplast gene for chloroplast product
          Length = 1355

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115913.1| Agropyron cristatum clone Agrcri2-PI281862 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1355

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115912.1| Agropyron cristatum clone Agrcri1-C-3-6-10 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast gene for
           chloroplast product
          Length = 1355

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115911.1| Aegilops uniaristata RNA polymerase alpha subunit (rpoA) gene,
           complete cds; chloroplast gene for chloroplast product
          Length = 1352

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 813

---

>gb|AY115910.1| Aegilops tauschii RNA polymerase alpha subunit (rpoA) gene,
           complete cds; chloroplast gene for chloroplast product
          Length = 1352

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 813

---

>gb|AY115909.1| Aegilops speltoides RNA polymerase alpha subunit (rpoA) gene,
           complete cds; chloroplast gene for chloroplast product
          Length = 1352

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 813

---

>gb|AY115908.1| Aegilops markgrafii RNA polymerase alpha subunit (rpoA) gene,
           complete cds; chloroplast gene for chloroplast product
          Length = 1352

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 813

---

>gb|DQ159335.1| Elymus mutabilis RNA polymerase subunit a (rpoA) gene, complete
           cds; plastid
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|DQ159334.1| Elymus dentatus RNA polymerase subunit a (rpoA) gene, complete cds;
           plastid
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|DQ159333.1| Elymus caucasicus RNA polymerase subunit a (rpoA) gene, complete
           cds; plastid
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|DQ159332.1| Elymus abolinii RNA polymerase subunit a (rpoA) gene, complete cds;
           plastid
          Length = 1354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z79501.1|FSZ79501 Festucopsis serpentini chloroplast rpoA gene
          Length = 1346

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z79500.1|HEZ79500 H.erectifolium chloroplast rpoA gene
          Length = 1358

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77771.1|ACZ77771 A.cristatum chloroplast rpoA gene
          Length = 1346

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77770.1|FFZ77770 F.festucoides chloroplast rpoA gene
          Length = 1346

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77768.1|AVZ77768 A.velutinum chloroplast rpoA gene
          Length = 1346

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77767.1|ARZ77767 A.retrofractum chloroplast rpoA gene
          Length = 1346

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77766.1|SSZ77766 S.speltoides chloroplast rpoA gene
          Length = 1343

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 813

---

>emb|Z77765.1|SSZ77765 S.strictum chloroplast rpoA gene
          Length = 1343

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 813

---

>emb|Z77764.1|HVZ77764 H.vulgare chloroplast rpoA gene
          Length = 1358

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77763.1|HMZ77763 Hordeum marinum subsp. gussoneanum chloroplast rpoA gene
          Length = 1352

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77762.1|HMZ77762 Hordeum murinum subsp. glaucum chloroplast rpoA gene
          Length = 1345

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77761.1|HBZ77761 H.brachyantherum chloroplast rpoA gene
          Length = 1358

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77760.1|TCZ77760 T.caput-medusae chloroplast rpoA gene
          Length = 1343

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 813

---

>emb|Z77759.1|BIZ77759 B.inermis chloroplast rpoA gene
          Length = 1345

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77758.1|PTZ77758 P.tauschii chloroplast rpoA gene
          Length = 1343

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 813

---

>emb|Z77757.1|CMZ77757 C.monococcum chloroplast rpoA gene
          Length = 1343

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 813

---

>emb|Z77756.1|AMZ77756 A.muticum chloroplast rpoA gene
          Length = 1343

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 813

---

>emb|Z77755.1|PRZ77755 P.rupestris chloroplast rpoA gene
          Length = 1346

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77754.1|PSZ77754 P.stoloniformis chloroplast rpoA gene
          Length = 1355

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77753.1|PFZ77753 Psathyrostachys fragilis subsp. villosus chloroplast rpoA gene
          Length = 1347

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77752.1|PFZ77752 Psathyrostachys fragilis subsp. fragilis chloroplast rpoA gene
          Length = 1347

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77751.1|CDZ77751 C.delileana chloroplast rpoA gene
          Length = 1343

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 813

---

>emb|Z77750.1|HPZ77750 H.piliferum chloroplast rpoA gene
          Length = 1345

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77749.1|PSZ77749 P.sanctum chloroplast rpoA gene
          Length = 1345

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77748.1|HPZ77748 H.persica chloroplast rpoA gene
          Length = 1345

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77746.1|ETZ77746 E.triticeum chloroplast rpoA gene
          Length = 1346

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77745.1|EDZ77745 E.distans chloroplast rpoA gene
          Length = 1346

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77744.1|PSZ77744 P.spicata chloroplast rpoA gene
          Length = 1345

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77743.1|LEZ77743 Elytrigia elongata chloroplast rpoA gene
          Length = 1345

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77742.1|CCZ77742 C.comosum chloroplast rpoA gene
          Length = 1343

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 813

---

>emb|Z77741.1|DVZ77741 D.villosum chloroplast rpoA gene
          Length = 1345

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|X15595.1|CHTARPOA Wheat chloroplast rpoA gene for RNA polymerase alpha-subunit and
           petD gene 3' region
          Length = 1320

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 779

---

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                            
Query: 164      acggatcagtggctcgtaagatgctttgacctcatcatcatcccactccaacccatccca 223
                ||||| |||||| ||||||||||||||||| ||  ||||||||||||||||| |||||||
Sbjct: 33453975 acggaacagtggatcgtaagatgctttgacttcggcatcatcccactccaacgcatccca 33454034

                         
Query: 224      ccagtccct 232
                ||| |||||
Sbjct: 33454035 ccactccct 33454043



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                            
Query: 371      gccatggagatacagttccttaagtttagggaagggcgtgatcactttgcaagtccctgc 430
                |||||||||||||||||| || || ||||||||||| |||||  || ||||| | | |||
Sbjct: 33454182 gccatggagatacagttctttgaggttagggaagggtgtgatgtctctgcaaattcttgc 33454241

                         
Query: 431      agcttgttc 439
                |||||||||
Sbjct: 33454242 agcttgttc 33454250



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                        
Query: 10       aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
                |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 33494373 aaaaggggggaagtaaacctgtttttattttcttggaaac 33494412



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 438      tcgtcttcgtctgccgccgc 457
                ||||||||||||||||||||
Sbjct: 13704187 tcgtcttcgtctgccgccgc 13704206

---

>gb|AY607071.1| Psathyrostachys caduca voucher H6702 RNA polymerase alpha subunit
           (rpoA) gene, complete cds; chloroplast
          Length = 1348

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY607070.1| Psathyrostachys rupestris subsp. rupestris voucher H6701 RNA
           polymerase alpha subunit (rpoA) gene, complete cds;
           chloroplast
          Length = 1356

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 817

---

>gb|AY607069.1| Psathyrostachys caduca voucher H6700 RNA polymerase alpha subunit
           (rpoA) gene, complete cds; chloroplast
          Length = 1357

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 817

---

>gb|AY607068.1| Psathyrostachys huashanica voucher H3087 RNA polymerase alpha
           subunit (rpoA) gene, complete cds; chloroplast
          Length = 1371

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 817

---

>gb|AY607067.1| Psathyrostachys fragilis subsp. villosus voucher H4378 RNA
           polymerase alpha subunit (rpoA) gene, complete cds;
           chloroplast
          Length = 1372

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 817

---

>gb|AY607066.1| Psathyrostachys fragilis subsp. villosus voucher H4375 RNA
           polymerase alpha subunit (rpoA) gene, complete cds;
           chloroplast
          Length = 1372

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 817

---

>gb|AY607065.1| Psathyrostachys fragilis subsp. secaliformis voucher H4348 RNA
           polymerase alpha subunit (rpoA) gene, complete cds;
           chloroplast
          Length = 1371

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 817

---

>gb|AY607063.1| Psathyrostachys lanuginosa isolate B voucher H8803 RNA polymerase
           alpha subunit (rpoA) gene, complete cds; chloroplast
          Length = 1371

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 817

---

>gb|AY607062.1| Psathyrostachys lanuginosa isolate A voucher H8803 RNA polymerase
           alpha subunit (rpoA) gene, complete cds; chloroplast
          Length = 1372

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 817

---

>gb|AY607061.1| Psathyrostachys juncea voucher H7544 RNA polymerase alpha subunit
           (rpoA) gene, complete cds; chloroplast
          Length = 1372

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 817

---

>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0415A04
          Length = 160669

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                          
Query: 164    acggatcagtggctcgtaagatgctttgacctcatcatcatcccactccaacccatccca 223
              ||||| |||||| ||||||||||||||||| ||  ||||||||||||||||| |||||||
Sbjct: 130141 acggaacagtggatcgtaagatgctttgacttcggcatcatcccactccaacgcatccca 130200

                       
Query: 224    ccagtccct 232
              ||| |||||
Sbjct: 130201 ccactccct 130209



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                          
Query: 371    gccatggagatacagttccttaagtttagggaagggcgtgatcactttgcaagtccctgc 430
              |||||||||||||||||| || || ||||||||||| |||||  || ||||| | | |||
Sbjct: 130348 gccatggagatacagttctttgaggttagggaagggtgtgatgtctctgcaaattcttgc 130407

                       
Query: 431    agcttgttc 439
              |||||||||
Sbjct: 130408 agcttgttc 130416

---

>dbj|AK120325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057M10, full
            insert sequence
          Length = 3354

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                        
Query: 164  acggatcagtggctcgtaagatgctttgacctcatcatcatcccactccaacccatccca 223
            ||||| |||||| ||||||||||||||||| ||  ||||||||||||||||| |||||||
Sbjct: 3039 acggaacagtggatcgtaagatgctttgacttcggcatcatcccactccaacgcatccca 2980

                     
Query: 224  ccagtccct 232
            ||| |||||
Sbjct: 2979 ccactccct 2971



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 59/69 (85%)
 Strand = Plus / Minus

                                                                        
Query: 371  gccatggagatacagttccttaagtttagggaagggcgtgatcactttgcaagtccctgc 430
            |||||||||||||||||| || || ||||||||||| |||||  || ||||| | | |||
Sbjct: 2832 gccatggagatacagttctttgaggttagggaagggtgtgatgtctctgcaaattcttgc 2773

                     
Query: 431  agcttgttc 439
            |||||||||
Sbjct: 2772 agcttgttc 2764

---

>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome
          Length = 134545

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                      
Query: 9     aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
             |||||||||||||||||||||||||||||||||||||||||
Sbjct: 74389 aaaaaggggtggagtaaacctgtttttattttcttcgaaac 74429

---

>gb|AY607064.1| Psathyrostachys lanuginosa isolate C voucher H8803 RNA polymerase
           alpha subunit (rpoA) gene, complete cds; chloroplast
          Length = 1371

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                   
Query: 10  aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 aaaaggggtggagtaaacctgtttttattttcttcgaaac 817

---

>gb|AY115966.1| Thinopyrum scirpeum RNA polymerase alpha subunit (rpoA) gene,
           complete cds; chloroplast gene for chloroplast product
          Length = 1354

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaagggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115965.1| Lophopyrum elongatum RNA polymerase alpha subunit (rpoA) gene,
           complete cds; chloroplast gene for chloroplast product
          Length = 1354

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaagggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|AY115964.1| Thinopyrum bessarabicum RNA polymerase alpha subunit (rpoA) gene,
           complete cds; chloroplast gene for chloroplast product
          Length = 1354

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaagggggtggagtaaacctgtttttattttcttcgaaac 808

---

>emb|Z77769.1|TBZ77769 T.bessarabicum chloroplast rpoA gene
          Length = 1345

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Minus

                                                    
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaagggggtggagtaaacctgtttttattttcttcgaaac 808

---

>gb|BT018701.1| Zea mays clone EL01N0515A02.d mRNA sequence
          Length = 1490

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Minus

                                                    
Query: 10   aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
            |||||||||||||| |||||||||||||||||||||||||
Sbjct: 1161 aaaaggggtggagttaacctgtttttattttcttcgaaac 1122

---

>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome
          Length = 140384

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                     
Query: 10    aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
             |||||||||||||| |||||||||||||||||||||||||
Sbjct: 76438 aaaaggggtggagttaacctgtttttattttcttcgaaac 76477

---

>emb|X07810.1|CHZMRPOA Zea mays chloroplast rpoA gene for RNA polymerase alpha-subunit
          Length = 1627

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Minus

                                                    
Query: 10   aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
            |||||||||||||| |||||||||||||||||||||||||
Sbjct: 1065 aaaaggggtggagttaacctgtttttattttcttcgaaac 1026

---

>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome
          Length = 141182

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                      
Query: 10     aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
              |||||||||||||| |||||||||||||||||||||||||
Sbjct: 138720 aaaaggggtggagttaacctgtttttattttcttcgaaac 138759

---

>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome
          Length = 140454

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                     
Query: 10    aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
             |||||||||||||| |||||||||||||||||||||||||
Sbjct: 76453 aaaaggggtggagttaacctgtttttattttcttcgaaac 76492

---

>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome
          Length = 141182

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                     
Query: 10    aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
             |||||||||||||| |||||||||||||||||||||||||
Sbjct: 77094 aaaaggggtggagttaacctgtttttattttcttcgaaac 77133

---

>gb|DQ069432.1| Yucca schidigera RNA polymerase alpha chain (rpoA) gene, partial
           cds; chloroplast
          Length = 1011

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                   
Query: 9   aaaaaggggtggagtaaacctgtttttattttcttcgaaa 48
           |||||||||| |||||||||||||||||||||| ||||||
Sbjct: 747 aaaaaggggtagagtaaacctgtttttattttcctcgaaa 708

---

>gb|DQ289180.1| Oryza granulata RNA polymerase subunit (rpoA) gene, partial cds;
           chloroplast
          Length = 1271

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 10  aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||| ||||||||||||||||||||||| |||||
Sbjct: 579 aaaaggggtgaagtaaacctgtttttattttcttggaaac 618

---

>gb|DQ289179.1| Oryza australiensis RNA polymerase subunit (rpoA) gene, partial
           cds; chloroplast
          Length = 1271

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 10  aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||| ||||||||||||||||||||||| |||||
Sbjct: 579 aaaaggggtgaagtaaacctgtttttattttcttggaaac 618

---

>gb|DQ289178.1| Oryza punctata RNA polymerase subunit (rpoA) gene, partial cds;
           chloroplast
          Length = 1271

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 10  aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||| ||||||||||||||||||||||| |||||
Sbjct: 579 aaaaggggtgaagtaaacctgtttttattttcttggaaac 618

---

>gb|DQ289176.1| Oryza officinalis RNA polymerase subunit (rpoA) gene, partial cds;
           chloroplast
          Length = 1271

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 10  aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||| ||||||||||||||||||||||| |||||
Sbjct: 579 aaaaggggtgaagtaaacctgtttttattttcttggaaac 618

---

>gb|DQ069431.1| Typha latifolia RNA polymerase alpha chain (rpoA) gene, partial
           cds; chloroplast
          Length = 1017

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                  
Query: 10  aaaaggggtggagtaaacctgtttttattttcttcgaaa 48
           |||| |||| |||||||||||||||||||||||||||||
Sbjct: 752 aaaaagggtagagtaaacctgtttttattttcttcgaaa 714

---

>ref|XM_481020.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2408

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 10   aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
            |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 2100 aaaaggggggaagtaaacctgtttttattttcttggaaac 2061

---

>ref|XM_475049.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1341

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 10   aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
            |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 1079 aaaaggggggaagtaaacctgtttttattttcttggaaac 1040

---

>ref|NM_190858.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1014

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 10  aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 752 aaaaggggggaagtaaacctgtttttattttcttggaaac 713

---

>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast,
             complete genome
          Length = 134551

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 10    aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
             |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 74604 aaaaggggggaagtaaacctgtttttattttcttggaaac 74643

---

>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast,
             complete genome
          Length = 134551

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 10    aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
             |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 74604 aaaaggggggaagtaaacctgtttttattttcttggaaac 74643

---

>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast,
             complete genome
          Length = 134496

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 10    aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
             |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 74548 aaaaggggggaagtaaacctgtttttattttcttggaaac 74587

---

>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome
          Length = 134525

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 10    aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
             |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 74592 aaaaggggggaagtaaacctgtttttattttcttggaaac 74631

---

>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08,
             complete sequence
          Length = 145980

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                     
Query: 10    aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
             |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 76179 aaaaggggggaagtaaacctgtttttattttcttggaaac 76140

---

>gb|DQ289177.1| Oryza rhizomatis RNA polymerase subunit (rpoA) gene, partial cds;
           chloroplast
          Length = 1271

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 10  aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||||| |||||||||||||| |||||||| |||||
Sbjct: 579 aaaaggggtgaagtaaacctgttttgattttcttggaaac 618

---

>gb|DQ289175.1| Oryza sp. IRGC 81916 RNA polymerase subunit (rpoA) gene, partial
           cds; chloroplast
          Length = 1264

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 10  aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 572 aaaaggggggaagtaaacctgtttttattttcttggaaac 611

---

>gb|DQ289174.1| Oryza glumipatula RNA polymerase subunit (rpoA) gene, partial cds;
           chloroplast
          Length = 1271

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 10  aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 579 aaaaggggggaagtaaacctgtttttattttcttggaaac 618

---

>gb|DQ289173.1| Oryza nivara RNA polymerase subunit (rpoA) gene, partial cds;
           chloroplast
          Length = 1271

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 10  aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 579 aaaaggggggaagtaaacctgtttttattttcttggaaac 618

---

>gb|DQ289172.1| Oryza sativa RNA polymerase subunit (rpoA) gene, partial cds;
           chloroplast
          Length = 1271

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 10  aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 579 aaaaggggggaagtaaacctgtttttattttcttggaaac 618

---

>gb|DQ289171.1| Oryza sativa RNA polymerase subunit (rpoA) gene, partial cds;
           chloroplast
          Length = 1271

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 10  aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 579 aaaaggggggaagtaaacctgtttttattttcttggaaac 618

---

>gb|DQ289170.1| Oryza sativa RNA polymerase subunit (rpoA) gene, partial cds;
           chloroplast
          Length = 1271

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 10  aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
           |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 579 aaaaggggggaagtaaacctgtttttattttcttggaaac 618

---

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                       
Query: 10      aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
               |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 9195106 aaaaggggggaagtaaacctgtttttattttcttggaaac 9195067



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                       
Query: 10      aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
               |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 9118153 aaaaggggggaagtaaacctgtttttattttcttggaaac 9118114

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                       
Query: 10      aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
               |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 5653995 aaaaggggggaagtaaacctgtttttattttcttggaaac 5654034

---

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                       
Query: 10      aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
               |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 9262453 aaaaggggggaagtaaacctgtttttattttcttggaaac 9262414



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 21    agtaaacctgtttttattttcttcgaaac 49
             ||||||||||||||||||||||| |||||
Sbjct: 71340 agtaaacctgtttttattttcttggaaac 71368

---

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                        
Query: 10       aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
                |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 23184492 aaaaggggggaagtaaacctgtttttattttcttggaaac 23184453

---

>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0557A01
          Length = 147201

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 10    aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
             |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 39570 aaaaggggggaagtaaacctgtttttattttcttggaaac 39609

---

>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0036E18
          Length = 141148

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                     
Query: 10    aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
             |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 73666 aaaaggggggaagtaaacctgtttttattttcttggaaac 73627

---

>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0417D05
          Length = 165752

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                      
Query: 10     aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
              |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 135140 aaaaggggggaagtaaacctgtttttattttcttggaaac 135101

---

>dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0642B07
          Length = 139297

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                     
Query: 10    aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
             |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 19254 aaaaggggggaagtaaacctgtttttattttcttggaaac 19215

---

>dbj|AK066307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013060A03, full
            insert sequence
          Length = 2412

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 10   aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
            |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 2104 aaaaggggggaagtaaacctgtttttattttcttggaaac 2065

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                       
Query: 10      aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
               |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 5653988 aaaaggggggaagtaaacctgtttttattttcttggaaac 5654027

---

>emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 159056

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                    
Query: 10   aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
            |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 8518 aaaaggggggaagtaaacctgtttttattttcttggaaac 8557

---

>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome
          Length = 134494

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 10    aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
             |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 74528 aaaaggggggaagtaaacctgtttttattttcttggaaac 74567

---

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                            
Query: 21      agtaaacctgtttttattttcttcgaaac 49
               ||||||||||||||||||||||| |||||
Sbjct: 3983234 agtaaacctgtttttattttcttggaaac 3983262

---

>dbj|AP005590.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0574F11
          Length = 159891

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 21     agtaaacctgtttttattttcttcgaaac 49
              ||||||||||||||||||||||| |||||
Sbjct: 114746 agtaaacctgtttttattttcttggaaac 114774

---

>dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1147B12
          Length = 127902

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 21    agtaaacctgtttttattttcttcgaaac 49
             ||||||||||||||||||||||| |||||
Sbjct: 71340 agtaaacctgtttttattttcttggaaac 71368

---

>ref|NM_195997.1| Oryza sativa (japonica cultivar-group) putative RNA polymerase alpha
            subunit (OSJNAb0075K12.31), mRNA
          Length = 1341

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 10   aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
            |||||||| | |||||| |||||||||||||||| |||||
Sbjct: 1079 aaaaggggggaagtaaatctgtttttattttcttggaaac 1040

---

>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAb0075K12, complete sequence
          Length = 125936

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 10    aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
             |||||||| | |||||| |||||||||||||||| |||||
Sbjct: 72803 aaaaggggggaagtaaatctgtttttattttcttggaaac 72842

---

>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence
          Length = 144459

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                    
Query: 10   aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
            |||||||| | |||||| |||||||||||||||| |||||
Sbjct: 6867 aaaaggggggaagtaaatctgtttttattttcttggaaac 6906

---

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 10       aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
                |||||||| | |||||| |||||||||||||||| |||||
Sbjct: 10366411 aaaaggggggaagtaaatctgtttttattttcttggaaac 10366450

---

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 10       aaaaggggtggagtaaacctgtttttattttcttcgaaac 49
                |||||||| | |||||| |||||||||||||||| |||||
Sbjct: 10372450 aaaaggggggaagtaaatctgtttttattttcttggaaac 10372489

---

>gb|AC153152.4| Mus musculus BAC clone RP23-78F1 from chromosome 12, complete sequence
          Length = 184523

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Minus

                                            
Query: 149    agttcactcaactccacggatcagtggctc 178
              |||||||||||||||||||| |||||||||
Sbjct: 169960 agttcactcaactccacgga-cagtggctc 169932

---

>ref|XM_982602.1| PREDICTED: Mus musculus RIKEN cDNA 4930573I19 gene (4930573I19Rik),
            mRNA
          Length = 7777

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                          
Query: 149  agttcactcaactccacggatcagtggctc 178
            |||||||||||||||||||| |||||||||
Sbjct: 1363 agttcactcaactccacgga-cagtggctc 1391

---

>ref|XM_914904.2| PREDICTED: Mus musculus RIKEN cDNA 4930573I19 gene, transcript
            variant 4 (4930573I19Rik), mRNA
          Length = 7779

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                          
Query: 149  agttcactcaactccacggatcagtggctc 178
            |||||||||||||||||||| |||||||||
Sbjct: 1363 agttcactcaactccacgga-cagtggctc 1391

---

>ref|XM_894845.2| PREDICTED: Mus musculus RIKEN cDNA 4930573I19 gene, transcript
            variant 2 (4930573I19Rik), mRNA
          Length = 7778

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                          
Query: 149  agttcactcaactccacggatcagtggctc 178
            |||||||||||||||||||| |||||||||
Sbjct: 1363 agttcactcaactccacgga-cagtggctc 1391

---

>ref|XM_127142.8| PREDICTED: Mus musculus RIKEN cDNA 4930573I19 gene, transcript
            variant 1 (4930573I19Rik), mRNA
          Length = 7782

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                          
Query: 149  agttcactcaactccacggatcagtggctc 178
            |||||||||||||||||||| |||||||||
Sbjct: 1367 agttcactcaactccacgga-cagtggctc 1395

---

>gb|BC041778.1| Mus musculus RIKEN cDNA 4930573I19 gene, mRNA (cDNA clone
            IMAGE:4481124), partial cds
          Length = 6713

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                          
Query: 149  agttcactcaactccacggatcagtggctc 178
            |||||||||||||||||||| |||||||||
Sbjct: 1007 agttcactcaactccacgga-cagtggctc 1035

---

>gb|AC101875.7| Mus musculus chromosome 12, clone RP23-367G12, complete sequence
          Length = 184813

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                            
Query: 149    agttcactcaactccacggatcagtggctc 178
              |||||||||||||||||||| |||||||||
Sbjct: 150854 agttcactcaactccacgga-cagtggctc 150882

---

>dbj|AK147592.1| Mus musculus cDNA, RIKEN full-length enriched library,
            clone:M5C1085I07 product:hypothetical Beta-propeller
            repeat TECPR/WD40-like containing protein, full insert
            sequence
          Length = 7777

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                          
Query: 149  agttcactcaactccacggatcagtggctc 178
            |||||||||||||||||||| |||||||||
Sbjct: 1363 agttcactcaactccacgga-cagtggctc 1391

---

>dbj|AK031736.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030499N03 product:hypothetical
            Trp-Asp repeat (WD-repeat) structure containing protein,
            full insert sequence
          Length = 4196

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                          
Query: 149  agttcactcaactccacggatcagtggctc 178
            |||||||||||||||||||| |||||||||
Sbjct: 1320 agttcactcaactccacgga-cagtggctc 1348

---

>dbj|AK129113.1| Mus musculus mRNA for mKIAA0297 protein
          Length = 7781

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                          
Query: 149  agttcactcaactccacggatcagtggctc 178
            |||||||||||||||||||| |||||||||
Sbjct: 1367 agttcactcaactccacgga-cagtggctc 1395

---

>gb|AC161468.2| Gallus gallus BAC clone CH261-94J19 from chromosome unknown, complete
              sequence
          Length = 238361

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 204    tcccactccaacccatcccacc 225
              ||||||||||||||||||||||
Sbjct: 139062 tcccactccaacccatcccacc 139041



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 202    catcccactccaacccatcccacc 225
              ||||||| ||||||||||||||||
Sbjct: 138889 catcccattccaacccatcccacc 138866



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 202    catcccactccaacccatcccacc 225
              ||||||| ||||||||||||||||
Sbjct: 138864 catcccattccaacccatcccacc 138841



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 202    catcccactccaacccatcccacc 225
              ||||||| ||||||||||||||||
Sbjct: 138814 catcccattccaacccatcccacc 138791



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 202    catcccactccaacccatcccacc 225
              ||||||| ||||||||||||||||
Sbjct: 138764 catcccattccaacccatcccacc 138741



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 202    catcccactccaacccatcccacc 225
              ||||||| ||||||||||||||||
Sbjct: 138714 catcccattccaacccatcccacc 138691

---

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 267     agtttgagcttcttgaggctt 287
               |||||||||||||||||||||
Sbjct: 4312398 agtttgagcttcttgaggctt 4312418

---

>emb|BX510655.18| Zebrafish DNA sequence from clone DKEY-94J16 in linkage group 5,
             complete sequence
          Length = 205761

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 205   cccactccaacccatcccacc 225
             |||||||||||||||||||||
Sbjct: 22967 cccactccaacccatcccacc 22947

---

>emb|BX927207.8| Zebrafish DNA sequence from clone DKEY-72K22 in linkage group 5,
             complete sequence
          Length = 154143

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 394   gtttagggaagggcgtgatca 414
             |||||||||||||||||||||
Sbjct: 96077 gtttagggaagggcgtgatca 96057



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 390   ttaagtttagggaagggcgtgatca 414
             ||||||||||||||||| |||||||
Sbjct: 38883 ttaagtttagggaagggggtgatca 38859

---

>gb|AC018529.12| Homo sapiens, clone RP11-4B16, complete sequence
          Length = 185590

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 204   tcccactccaacccatcccac 224
             |||||||||||||||||||||
Sbjct: 98371 tcccactccaacccatcccac 98351

---

>gb|AC100863.2| Homo sapiens chromosome 18, clone RP11-751H17, complete sequence
          Length = 175527

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 204  tcccactccaacccatcccac 224
            |||||||||||||||||||||
Sbjct: 8102 tcccactccaacccatcccac 8082

---

>emb|BX957226.10| Zebrafish DNA sequence from clone CH211-110P13 in linkage group 5,
            complete sequence
          Length = 149414

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 205  cccactccaacccatcccacc 225
            |||||||||||||||||||||
Sbjct: 2748 cccactccaacccatcccacc 2728

---

>emb|BX511256.9| Zebrafish DNA sequence from clone DKEY-58M10 in linkage group 1, complete
              sequence
          Length = 232496

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 390    ttaagtttagggaagggcgtgatca 414
              ||||||||||||||||| |||||||
Sbjct: 223749 ttaagtttagggaagggggtgatca 223725

---

>dbj|AK128542.1| Homo sapiens cDNA FLJ46701 fis, clone TRACH3014063
          Length = 4660

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 126  accaacataatacaccaaaac 146
            |||||||||||||||||||||
Sbjct: 4622 accaacataatacaccaaaac 4602

---

>ref|NM_170188.1| Drosophila melanogaster CG6422-RB, transcript variant B (CG6422),
            mRNA
          Length = 2829

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 254  ttccgcggcagcgagtttgag 274
            |||||||||||||||||||||
Sbjct: 1249 ttccgcggcagcgagtttgag 1269

---

>gb|AC105937.2| Homo sapiens chromosome 3 clone RP11-45J19, complete sequence
          Length = 171621

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 126    accaacataatacaccaaaac 146
              |||||||||||||||||||||
Sbjct: 126604 accaacataatacaccaaaac 126584

---

>ref|NM_143065.2| Drosophila melanogaster CG6422-RA, transcript variant A (CG6422),
            mRNA
          Length = 2693

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 254  ttccgcggcagcgagtttgag 274
            |||||||||||||||||||||
Sbjct: 1113 ttccgcggcagcgagtttgag 1133

---

>gb|AY069675.1| Drosophila melanogaster LD44979 full length cDNA
          Length = 2679

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 254  ttccgcggcagcgagtttgag 274
            |||||||||||||||||||||
Sbjct: 1061 ttccgcggcagcgagtttgag 1081

---

>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0032G08, from Chromosome 3, complete sequence
          Length = 122052

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 267    agtttgagcttcttgaggctt 287
              |||||||||||||||||||||
Sbjct: 114099 agtttgagcttcttgaggctt 114079

---

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 267     agtttgagcttcttgaggctt 287
               |||||||||||||||||||||
Sbjct: 4312513 agtttgagcttcttgaggctt 4312533

---

>gb|AC007853.4|AC007853 Drosophila melanogaster, chromosome 3R, region 96B-96C, BAC clone
             BACR03L02, complete sequence
          Length = 162921

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 254   ttccgcggcagcgagtttgag 274
             |||||||||||||||||||||
Sbjct: 74781 ttccgcggcagcgagtttgag 74761

---

>gb|AC008206.10|AC008206 Drosophila melanogaster, chromosome 3R, region 96B-96B, BAC clone
              BACR03I15, complete sequence
          Length = 181132

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 254    ttccgcggcagcgagtttgag 274
              |||||||||||||||||||||
Sbjct: 138113 ttccgcggcagcgagtttgag 138093

---

>gb|AC009969.10| Homo sapiens BAC clone RP11-418G17 from 2, complete sequence
          Length = 166892

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 24    aaacctgtttttattttcttcgaaa 48
             |||||||||||| ||||||||||||
Sbjct: 69358 aaacctgttttttttttcttcgaaa 69334

---

>gb|AC009948.3| Homo sapiens BAC clone RP11-65L3 from 2, complete sequence
          Length = 172828

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 126   accaacataatacaccaaaac 146
             |||||||||||||||||||||
Sbjct: 46611 accaacataatacaccaaaac 46591

---

>gb|AE003750.2| Drosophila melanogaster chromosome 3R, section 88 of 118 of the
             complete sequence
          Length = 227219

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 254   ttccgcggcagcgagtttgag 274
             |||||||||||||||||||||
Sbjct: 97300 ttccgcggcagcgagtttgag 97280

---

>gb|BT001679.1| Drosophila melanogaster RE55836 full insert cDNA
          Length = 2826

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 254  ttccgcggcagcgagtttgag 274
            |||||||||||||||||||||
Sbjct: 1231 ttccgcggcagcgagtttgag 1251

---

>gb|AY757818.1| Acorus gramineus RpoA (rpoA) gene, complete cds; and PetD (petD)
           gene, partial cds; chloroplast
          Length = 1655

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 21  agtaaacctgtttttattttcttcgaaa 48
           |||||||||||||| |||||| ||||||
Sbjct: 741 agtaaacctgttttgattttcctcgaaa 714

---

>ref|NM_183985.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 885

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 438 tcgtcttcgtctgccgccgc 457
           ||||||||||||||||||||
Sbjct: 524 tcgtcttcgtctgccgccgc 505

---

>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 331    gcatgcatgcgctgccgctc 350
              ||||||||||||||||||||
Sbjct: 489602 gcatgcatgcgctgccgctc 489583

---

>gb|DQ069427.1| Acorus americanus RNA polymerase alpha chain (rpoA) gene, partial
           cds; chloroplast
          Length = 1011

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 21  agtaaacctgtttttattttcttcgaaa 48
           |||||||||||||| |||||| ||||||
Sbjct: 741 agtaaacctgttttgattttcctcgaaa 714

---

>gb|AC126245.3| Mus musculus BAC clone RP24-354D8 from chromosome 17, complete sequence
          Length = 160440

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   tatctctgaaattttggacc 128
             ||||||||||||||||||||
Sbjct: 88561 tatctctgaaattttggacc 88580

---

>ref|XM_838121.1| Leishmania major strain Friedlin protein kinase (LMJ_1037) partial
            mRNA
          Length = 1470

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 331  gcatgcatgcgctgccgctc 350
            ||||||||||||||||||||
Sbjct: 1310 gcatgcatgcgctgccgctc 1291

---

>emb|AL136181.13| Human DNA sequence from clone RP11-35J23 on chromosome 10 Contains two
             novel genes, the DNTT gene for terminal
             deoxynucleotidyltransferase (TDT), the TMEM10 gene for
             transmembrane protein 10 (TMP10, HTMP10) and the 3' end of
             the TLL2 gene for tolloid-like 2, complete sequence
          Length = 146909

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 202   catcccactccaacccatcccacc 225
             |||||||||||| |||||||||||
Sbjct: 11770 catcccactccaccccatcccacc 11793

---

>gb|AC091948.3| Homo sapiens chromosome 5 clone RP11-373N22, complete sequence
          Length = 172162

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   tttatctccttcagttccgc 259
             ||||||||||||||||||||
Sbjct: 79306 tttatctccttcagttccgc 79325

---

>gb|AF532117.1| Mus musculus strain 129/SvJ BAC clone citb9k22 from the MHC region,
             complete sequence
          Length = 173288

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   tatctctgaaattttggacc 128
             ||||||||||||||||||||
Sbjct: 68028 tatctctgaaattttggacc 68047

---

>dbj|BA000027.2| Oryzias latipes DNA, MHC Class I Region
          Length = 425935

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      aagtaaaaaaggggtggagt 23
              ||||||||||||||||||||
Sbjct: 168449 aagtaaaaaaggggtggagt 168430

---

>dbj|AP003205.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1146B04
          Length = 145186

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 438   tcgtcttcgtctgccgccgc 457
             ||||||||||||||||||||
Sbjct: 42515 tcgtcttcgtctgccgccgc 42534

---

>dbj|AP003336.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1151H08
          Length = 123001

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 438    tcgtcttcgtctgccgccgc 457
              ||||||||||||||||||||
Sbjct: 109425 tcgtcttcgtctgccgccgc 109444

---

>gb|AC154819.2| Mus musculus BAC clone RP24-535A1 from 17, complete sequence
          Length = 165136

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   tatctctgaaattttggacc 128
             ||||||||||||||||||||
Sbjct: 29006 tatctctgaaattttggacc 29025

---

>emb|AL935132.13| Mouse DNA sequence from clone RP23-8G23 on chromosome 2, complete
             sequence
          Length = 165444

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    aaaccaacagagaaaagccc 65
             ||||||||||||||||||||
Sbjct: 90310 aaaccaacagagaaaagccc 90291

---

>emb|AJ879453.1| Acorus calamus chloroplast, complete genome
          Length = 153821

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 21    agtaaacctgtttttattttcttcgaaa 48
             |||||||||||||| |||||| ||||||
Sbjct: 77929 agtaaacctgttttgattttcctcgaaa 77956

---

>emb|AL606498.17| Mouse DNA sequence from clone RP23-197C15 on chromosome 11, complete
              sequence
          Length = 222330

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 202    catcccactccaacccatcccacc 225
              |||||||||||| |||||||||||
Sbjct: 186584 catcccactccatcccatcccacc 186607


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,641,505
Number of Sequences: 3902068
Number of extensions: 4641505
Number of successful extensions: 114277
Number of sequences better than 10.0: 214
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113642
Number of HSP's gapped (non-prelim): 635
length of query: 457
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 435
effective length of database: 17,147,199,772
effective search space: 7459031900820
effective search space used: 7459031900820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---