>GU01_RAT (P35894) Putative gustatory receptor clone PTE01 (Fragment)|
          Length = 185

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = -3

Query: 334 TRVER*FTDTVTNNSPACLAGRLRTLCAAVIFGCQCHSRIAAVTYPPFPWPLEGVMLVSP 155
           T + +   D  TNN     +G L  +   ++FGC     + A+ Y  F      V +  P
Sbjct: 18  TTLPKMIVDIQTNNRAISYSGCLTQMSFFMLFGCLDSLLLTAMAYDRF------VAICHP 71

Query: 154 LHYRLV 137
           LHY+++
Sbjct: 72  LHYQVI 77

>AVP_HORVU (Q06572) Pyrophosphate-energized vacuolar membrane proton pump (EC|
           3.6.1.1) (Pyrophosphate-energized inorganic
           pyrophosphatase) (H(+)-PPase)
          Length = 762

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 376 FATYGGLLFKYI 341
           FATYGGLLFKYI
Sbjct: 751 FATYGGLLFKYI 762

>FRQ_SORFI (Q09033) Frequency clock protein|
          Length = 997

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -3

Query: 220  RIAAV-TYPPFPWPLEGVMLVSPLHYRLVAPCSRRERPDVLP---RWYVPGKFSSSHDDD 53
            R+A++ T  P P P    ++++PL    VA    R  P  LP    +Y P    SS DD 
Sbjct: 815  RLASIRTSSPLPPPRSRNLILAPLQIEYVAGEFHRLNPASLPPPAMFYPPFSTDSSWDDG 874

Query: 52   DNV 44
            D++
Sbjct: 875  DDL 877

>UNC89_CAEEL (O01761) Muscle M-line assembly protein unc-89 (Uncoordinated protein|
            89)
          Length = 8081

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 221  GMTLTTKNNSSAQRTKAAGQAGGGVIRDSVCKSSLDSSPLDVLEQQTSVR 370
            G+T+ TK + S   T   G   GGV   S+  S ++   +   + QT VR
Sbjct: 1300 GVTVETKESESESATTVIGGGSGGVTEGSISVSKIE--VVSKTDSQTDVR 1347

>Y615_RHIME (Q92S22) Maf-like protein R00615|
          Length = 206

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 21/70 (30%), Positives = 29/70 (41%)
 Frame = -1

Query: 348 STSRGLESSDDLQTLSRITPPPAWPAAFVRCALLLFLVVNVIPGLPRLPTPLSPGLLKAL 169
           S +R L +      LS IT  PAW  +++  A  +  V   I   P L +  S  L    
Sbjct: 47  SLARRLSAEKAKAALSAITGDPAWDGSYILAADTVVCVGRRILPKPELVSEASSALHLLS 106

Query: 168 C*SHHYITGL 139
             SH   TG+
Sbjct: 107 GRSHRVYTGI 116

>MYCD_MOUSE (Q8VIM5) Myocardin (SRF cofactor protein) (Basic SAP coiled-coil|
           transcription activator 2)
          Length = 935

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = +2

Query: 179 KRPGERGVGNRGNPGMTLTTKNNSSAQRTKAAGQAGGGVIRDSVCKSSLDSSPLDVLEQQ 358
           K P E+   N  NP  T  +    S  +   +GQ G   ++      +LD   +  L QQ
Sbjct: 333 KEPNEQMARNP-NPSSTPLSNTPLSPVKNSISGQTGVSSLKPGPLPPNLDDLKVSELRQQ 391

Query: 359 TSVRG 373
             +RG
Sbjct: 392 LRIRG 396

>TPSNR_HUMAN (Q9BX59) Tapasin-related protein precursor (TAPASIN-R)|
           (Tapasin-like) (TAP-binding protein-related protein)
           (TAPBP-R) (TAP-binding protein-like)
          Length = 468

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = -1

Query: 354 CSSTSRGLESSDDLQTLSRITPPPAWPAAFVRCALLLFLVVNVIPGLPRLPTPLSPGLLK 175
           C  T   LE  + L   +++ PP    A  V  A  LFL+  +  GL R   P   GLL+
Sbjct: 382 CQVTHISLE--EPLGASTQVVPPERRTALGVIFASSLFLLALMFLGLQRRQAPTGLGLLQ 439

Query: 174 A 172
           A
Sbjct: 440 A 440

>MAGD1_RAT (Q9ES73) Melanoma-associated antigen D1 (MAGE-D1 antigen)|
           (Neurotrophin receptor-interacting MAGE homolog)
           (Sertoli cell necdin-related gene 1) (SNERG-1)
          Length = 775

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 218 PGMTLTTKNNSSAQRTKAAGQAGGGVIRDSVCKSSLDSSPLDVLEQQTSVRGK 376
           PG    T+N + A+       AG      +  ++S D S    +E +T +RGK
Sbjct: 192 PGADAQTQNVNQAKMADVGTSAGISETDGAAAQTSADGSQAQNVESRTIIRGK 244

>MAGD1_MOUSE (Q9QYH6) Melanoma-associated antigen D1 (MAGE-D1 antigen)|
           (Neurotrophin receptor-interacting MAGE homolog)
           (Dlxin-1)
          Length = 775

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 218 PGMTLTTKNNSSAQRTKAAGQAGGGVIRDSVCKSSLDSSPLDVLEQQTSVRGK 376
           PG    T+N + A+       AG      +  ++S D S    +E +T +RGK
Sbjct: 190 PGADAQTQNVNQAKMADVGTSAGISEADGAAAQTSADGSQTQNVESRTIIRGK 242

>NEO1_MOUSE (P97798) Neogenin precursor|
          Length = 1493

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = -3

Query: 280 LAGRLRTLCAAVIFGCQCHSRIAAV-TYPPFPWPLEGVMLVSPLHYRLVAPCSRRERPDV 104
           L GR  +  AA   G +  S+ A+V T+ PF + +E V  +S     ++  CS    P  
Sbjct: 34  LLGRPASGAAATKSGPRRQSQGASVRTFTPFYFLVEPVDTLSVRGSSVILNCSAYSEPSP 93

Query: 103 LPRWYVPGKFSSSHDDD 53
              W   G F +   DD
Sbjct: 94  NIEWKKDGTFLNLESDD 110

>CAC1F_MOUSE (Q9JIS7) Voltage-dependent L-type calcium channel alpha-1F subunit|
            (Voltage-gated calcium channel alpha subunit Cav1.4)
          Length = 1985

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 60   SWDEENLPGTYQRGRTSGLS 119
            S ++  +PGTY RGRTSG S
Sbjct: 1821 SCEDLPIPGTYHRGRTSGPS 1840

>GAG_MLVF5 (P26807) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 538

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 199 PPFPWPLEGVMLVSPLHYRLVAPCSRRERPDVLP 98
           PPFP P +     S L+  L +P + + RP VLP
Sbjct: 120 PPFPTPPQ-----SSLYPALTSPLNTKPRPQVLP 148

>GAP1_DROME (P48423) GTPase-activating protein (Ras GTPase-activating protein)|
          Length = 1163

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 173 RYVSLTITLPACSSM**KRETRCPPSLVC 87
           R+V +TI +PAC  +  K++  C P +VC
Sbjct: 277 RFVGVTIKVPACVDL-AKKQGTCDPFVVC 304

>VA5_VESPE (P35785) Venom allergen 5 (Antigen 5) (Ag5) (Allergen Ves p 5) (Ves|
           p V)
          Length = 204

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 167 HNAFKRPGERGVGNRGNPGMTLTTKN 244
           HN F++   RG+  RGNPG     KN
Sbjct: 48  HNDFRQKIARGLETRGNPGPQPPAKN 73

>VA5_VESMC (P35760) Venom allergen 5 (Antigen 5) (Ag5) (Allergen Ves m 5) (Ves|
           m V)
          Length = 204

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 167 HNAFKRPGERGVGNRGNPGMTLTTKN 244
           HN F++   RG+  RGNPG     KN
Sbjct: 48  HNDFRQKIARGLETRGNPGPQPPAKN 73

>VA5_VESGE (P35784) Venom allergen 5 (Antigen 5) (Ag5) (Allergen Ves g 5) (Ves|
           g V)
          Length = 204

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 167 HNAFKRPGERGVGNRGNPGMTLTTKN 244
           HN F++   RG+  RGNPG     KN
Sbjct: 48  HNDFRQKIARGLETRGNPGPQPPAKN 73

>VA5_VESFL (P35783) Venom allergen 5 (Antigen 5) (Ag5) (Allergen Ves f 5) (Ves|
           f V)
          Length = 204

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 167 HNAFKRPGERGVGNRGNPGMTLTTKN 244
           HN F++   RG+  RGNPG     KN
Sbjct: 48  HNDFRQKIARGLETRGNPGPQPPAKN 73

>PRXC_STRLI (P49323) Non-heme chloroperoxidase (EC 1.11.1.10) (Chloride|
           peroxidase) (CPO-L) (Chloroperoxidase L)
          Length = 275

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -3

Query: 187 WPLEGVMLVSPLHYRLVAPCSRRERPDVLPRWYVPGKFSSSHDDDDNV 44
           W L+G+M  +  HY  +A  S  +  D L R  VP     +H  DD V
Sbjct: 183 WWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVP--VLVAHGTDDQV 228

>ZFNL1_ORYSA (Q5NAW2) Zinc finger CCCH type domain-containing protein ZFN-like 1|
          Length = 476

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -3

Query: 241 FGCQC---HSRIAAVTYPP--FPWPLEGVMLVSPLHYRLVAPCSRRERPDVLPRWYVPGK 77
           FG  C   H     V   P  +P PL+   + SP  Y  +A   +  RP V+P  Y+PG 
Sbjct: 170 FGTTCKFHHPEFGGVPMTPGIYP-PLQSPSIASPHPYASLANW-QMGRPPVVPGSYIPGS 227

Query: 76  FS 71
           ++
Sbjct: 228 YT 229

>MYCD_RAT (Q8R5I7) Myocardin|
          Length = 938

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +2

Query: 215 NPGMTLTTKNNS--SAQRTKAAGQAGGGVIRDSVCKSSLDSSPLDVLEQQTSVRG 373
           NP  + T  NN+  S  +   +GQ G   ++      +LD   +  L QQ  +RG
Sbjct: 345 NPNSSSTPLNNTPLSPVKNSLSGQTGVSSLKPGPLPPNLDDLKVSELRQQLRIRG 399

>VA5_VESVU (Q05110) Venom allergen 5 precursor (Antigen 5) (Ag5) (Allergen Ves|
           v 5) (Ves v V)
          Length = 227

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 167 HNAFKRPGERGVGNRGNPGMTLTTKN 244
           HN F++   RG+  RGNPG     KN
Sbjct: 71  HNDFRQKIARGLETRGNPGPQPPAKN 96

>VA5_VESSQ (P35786) Venom allergen 5 (Antigen 5) (Ag5) (Allergen Ves s 5) (Ves|
           s V)
          Length = 205

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 167 HNAFKRPGERGVGNRGNPGMTLTTKN 244
           HN F+    RG+  RGNPG     KN
Sbjct: 49  HNDFRNKVARGLETRGNPGPQPPAKN 74


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,304,211
Number of Sequences: 219361
Number of extensions: 1307336
Number of successful extensions: 3835
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3834
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)