ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|D13472.2|BLYINOPP Hordeum vulgare mRNA for vacuolar membrane... 565 e-158
2gb|AY296911.1| Triticum aestivum vacuolar proton-inorganic pyrop... 176 3e-41
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
4dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
5dbj|AK066933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
6dbj|AB012766.1| Oryza sativa gene for ovp2, complete cds 92 2e-15
7dbj|D45384.1| Oryza sativa mRNA for vacuolar H+-pyrophosphatase,... 92 2e-15
8emb|BX957342.5| Zebrafish DNA sequence from clone CH211-120P12 i... 42 1.3
9gb|AC160538.8| Mus musculus chromosome 15, clone RP24-156D3, com... 40 5.0
10gb|AC114649.9| Mus musculus chromosome 5, clone RP24-150M14, com... 40 5.0
11gb|AC146132.3| Pan troglodytes BAC clone RP43-23H13 from 7, comp... 40 5.0
12gb|AC105947.11| Mus musculus chromosome 18, clone RP24-66N1, com... 40 5.0
13gb|AC140316.3| Mus musculus BAC clone RP23-419L10 from chromosom... 40 5.0
14ref|XM_808881.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 5.0
15gb|AC072039.19| Homo sapiens 3 BAC RP11-305O4 (Roswell Park Canc... 40 5.0
16ref|XM_812966.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 5.0
17gb|AC113976.13| Mus musculus chromosome 15, clone RP23-146F23, c... 40 5.0
18gb|AC142299.1| Pan troglodytes BAC clone RP43-121O18 from 7, com... 40 5.0
19emb|AL035692.10|HS329N18 Human DNA sequence from clone RP3-329N1... 40 5.0
20gb|AC121765.2| Homo sapiens chromosome 3 clone RP11-767D18, comp... 40 5.0
21gb|AC105266.2| Homo sapiens chromosome 3 clone RP11-796K6, compl... 40 5.0
22gb|AC009198.8|AC009198 Drosophila melanogaster, chromosome 2L, r... 40 5.0
23gb|AC134025.2| Homo sapiens 3 BAC RP11-231I13 (Roswell Park Canc... 40 5.0
24gb|AE003635.2| Drosophila melanogaster chromosome 2L, section 44... 40 5.0
25dbj|AB044479.1| Volvox rousseletii chloroplast psbC gene for pho... 40 5.0
26dbj|AB044478.1| Volvox globator chloroplast psbC gene for photos... 40 5.0
27dbj|AB044477.1| Volvox barberi chloroplast psbC gene for photosy... 40 5.0 
>dbj|D13472.2|BLYINOPP Hordeum vulgare mRNA for vacuolar membrane proton-translocating
            inorganic pyrophosphatase, complete cds
          Length = 2649

 Score =  565 bits (285), Expect = e-158
 Identities = 361/381 (94%), Gaps = 14/381 (3%)
 Strand = Plus / Minus

                                                                        
Query: 8    caatcatcatgatatcattgttcaagggtgggttcaaacattatcgtcgtcatcatggga 67
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2649 caatcatcatgatatcattgttcaagggtgggttcaaacattatcgtcgtcatcatggga 2590

                                                                        
Query: 68   cgaggaaaatttgccaggcacataccaacgagggaggacatctggtctctctcttctact 127
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2589 cgaggaaaatttgccagacacataccaacgagggaggacatctggtctctctcttctact 2530

                                                                        
Query: 128  acatggagctacaagccggtaatgtaatggtgagactaacataacgccttcaagaggcca 187
            ||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 2529 acatggagctacaagcc-gtaatgtaat-gtgagactaacataacg-cttcaagaggcca 2473

                                                                        
Query: 188  ggggaaaggggggtaggtaaccgcggcaatcctggaatgacattgacaaccaaaaataac 247
            ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 2472 ggggaaaggggggtaggtaactgcggcaatcctgg-atgacattgacaaccaaaaataac 2414

                                                                        
Query: 248  agcagcgcacaacgtacgaa-----ggcggccggccaggcaggcgggggagttattcgtg 302
            ||||||||||||||||||||     ||||| ||| |||||||||||||||||||||||||
Sbjct: 2413 agcagcgcacaacgtacgaacggcgggcgggcgggcaggcaggcgggggagttattcgtg 2354

                                                                        
Query: 303  acagtgtctgtaaatcatcgctcgact-----cgagtcctctagatgtacttgaacagca 357
            |||||||||||| ||||||||||||||     ||||||||||||||||||||||||||||
Sbjct: 2353 acagtgtctgtagatcatcgctcgactcatcacgagtcctctagatgtacttgaacagca 2294

                                 
Query: 358  gacctccgtacgtggcaaaga 378
            |||||||||||||||| ||||
Sbjct: 2293 gacctccgtacgtggcgaaga 2273
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>gb|AY296911.1| Triticum aestivum vacuolar proton-inorganic pyrophosphatase mRNA,
            complete cds
          Length = 2671

 Score =  176 bits (89), Expect = 3e-41
 Identities = 206/239 (86%), Gaps = 17/239 (7%)
 Strand = Plus / Minus

                                                                        
Query: 37   gggttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccaggcacatacc--- 93
            |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||   
Sbjct: 2617 gggttcaaacattatcgtcgtcatcacgggacgaggaaaatttgccagacacataccaat 2558

                                                                        
Query: 94   aacgagggaggacatctggtctctctcttctactacatggagctacaagccggtaatgta 153
            || ||  |||||||||||||||||||||||||||||||||||||||||||||     |||
Sbjct: 2557 aatgaccgaggacatctggtctctctcttctactacatggagctacaagccg-----gta 2503

                                                                        
Query: 154  atggtgagactaacataacgccttcaagaggcc-aggggaaag-gggggtaggtaaccgc 211
            |||||||||||||| |||| |   ||||||||| | ||||||| |||||||   ||| ||
Sbjct: 2502 atggtgagactaacgtaacacacccaagaggccaaagggaaagtgggggta---aactgc 2446

                                                                       
Query: 212  ggcaatcctgg---aatgacattgacaaccaaaaataacagcagcgcacaacgtacgaa 267
            |||||||||||   |||||||   | |||||||||||||||||||||||||| ||||||
Sbjct: 2445 ggcaatcctggaataatgaca-caagaaccaaaaataacagcagcgcacaacatacgaa 2388



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                             
Query: 330  cgagtcctctagatgtacttgaacagcagacctccgtacgtggcaaaga 378
            |||||| ||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 2327 cgagtcttctagatgtacttgaacagcacacctccgtacgtggcgaaga 2279
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                             
Query: 39      gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 84
               ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3935071 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 3935026
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>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0035I03
          Length = 153749

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                           
Query: 39    gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 84
             ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40947 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 40902
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>dbj|AK066933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091F19, full
            insert sequence
          Length = 2738

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                          
Query: 39   gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 84
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2692 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 2647
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>dbj|AB012766.1| Oryza sativa gene for ovp2, complete cds
          Length = 5985

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                          
Query: 39   gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 84
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5951 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 5906
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>dbj|D45384.1| Oryza sativa mRNA for vacuolar H+-pyrophosphatase, complete cds
          Length = 2710

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                          
Query: 39   gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 84
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2677 gttcaaacattatcgtcgtcatcatgggacgaggaaaatttgccag 2632
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>emb|BX957342.5| Zebrafish DNA sequence from clone CH211-120P12 in linkage group 13,
              complete sequence
          Length = 182888

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 110    tggtctctctcttctactaca 130
              |||||||||||||||||||||
Sbjct: 109831 tggtctctctcttctactaca 109851
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>gb|AC160538.8| Mus musculus chromosome 15, clone RP24-156D3, complete sequence
          Length = 158943

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   acattgacaaccaaaaataa 246
             ||||||||||||||||||||
Sbjct: 66522 acattgacaaccaaaaataa 66503
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>gb|AC114649.9| Mus musculus chromosome 5, clone RP24-150M14, complete sequence
          Length = 154765

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 113    tctctctcttctactacatg 132
              ||||||||||||||||||||
Sbjct: 137646 tctctctcttctactacatg 137627
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>gb|AC146132.3| Pan troglodytes BAC clone RP43-23H13 from 7, complete sequence
          Length = 164355

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   ttcaagaggccaggggaaag 195
             ||||||||||||||||||||
Sbjct: 84354 ttcaagaggccaggggaaag 84335
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>gb|AC105947.11| Mus musculus chromosome 18, clone RP24-66N1, complete sequence
          Length = 207139

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    ctctctcttctactacatgg 133
              ||||||||||||||||||||
Sbjct: 166627 ctctctcttctactacatgg 166608
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>gb|AC140316.3| Mus musculus BAC clone RP23-419L10 from chromosome 18, complete sequence
          Length = 195911

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    ctctctcttctactacatgg 133
              ||||||||||||||||||||
Sbjct: 178571 ctctctcttctactacatgg 178590
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>ref|XM_808881.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053506661.50) partial mRNA
          Length = 2991

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 60   tcatgggacgaggaaaattt 79
            ||||||||||||||||||||
Sbjct: 1392 tcatgggacgaggaaaattt 1411
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>gb|AC072039.19| Homo sapiens 3 BAC RP11-305O4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 154964

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    tctggtctctctcttctact 127
              ||||||||||||||||||||
Sbjct: 108378 tctggtctctctcttctact 108359
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>ref|XM_812966.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053511245.110) partial mRNA
          Length = 2988

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 60   tcatgggacgaggaaaattt 79
            ||||||||||||||||||||
Sbjct: 1392 tcatgggacgaggaaaattt 1411
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>gb|AC113976.13| Mus musculus chromosome 15, clone RP23-146F23, complete sequence
          Length = 184010

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   acattgacaaccaaaaataa 246
             ||||||||||||||||||||
Sbjct: 38446 acattgacaaccaaaaataa 38465
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>gb|AC142299.1| Pan troglodytes BAC clone RP43-121O18 from 7, complete sequence
          Length = 146878

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    ttcaagaggccaggggaaag 195
              ||||||||||||||||||||
Sbjct: 105556 ttcaagaggccaggggaaag 105575
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>emb|AL035692.10|HS329N18 Human DNA sequence from clone RP3-329N18 on chromosome 6q22.1-22.33,
             complete sequence
          Length = 84764

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   tctggtctctctcttctact 127
             ||||||||||||||||||||
Sbjct: 50835 tctggtctctctcttctact 50816
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>gb|AC121765.2| Homo sapiens chromosome 3 clone RP11-767D18, complete sequence
          Length = 194455

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   acattgacaaccaaaaataa 246
             ||||||||||||||||||||
Sbjct: 77255 acattgacaaccaaaaataa 77274
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>gb|AC105266.2| Homo sapiens chromosome 3 clone RP11-796K6, complete sequence
          Length = 181462

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   acattgacaaccaaaaataa 246
             ||||||||||||||||||||
Sbjct: 33181 acattgacaaccaaaaataa 33200
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>gb|AC009198.8|AC009198 Drosophila melanogaster, chromosome 2L, region 33B-33C, BAC clone
             BACR19C12, complete sequence
          Length = 171134

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   tctagatgtacttgaacagc 356
             ||||||||||||||||||||
Sbjct: 76960 tctagatgtacttgaacagc 76941
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>gb|AC134025.2| Homo sapiens 3 BAC RP11-231I13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 183111

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   acattgacaaccaaaaataa 246
             ||||||||||||||||||||
Sbjct: 80094 acattgacaaccaaaaataa 80075
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>gb|AE003635.2| Drosophila melanogaster chromosome 2L, section 44 of 83 of the complete
              sequence
          Length = 308012

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    tctagatgtacttgaacagc 356
              ||||||||||||||||||||
Sbjct: 137931 tctagatgtacttgaacagc 137912
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>dbj|AB044479.1| Volvox rousseletii chloroplast psbC gene for photosystem II CP43
           apoprotein, strain:UTEX 1862
          Length = 780

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 235 aaccaaaaataacagcagcg 254
           ||||||||||||||||||||
Sbjct: 370 aaccaaaaataacagcagcg 351
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>dbj|AB044478.1| Volvox globator chloroplast psbC gene for photosystem II CP43
           apoprotein, strain:UTEX 955
          Length = 780

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 235 aaccaaaaataacagcagcg 254
           ||||||||||||||||||||
Sbjct: 370 aaccaaaaataacagcagcg 351
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>dbj|AB044477.1| Volvox barberi chloroplast psbC gene for photosystem II CP43
           apoprotein, strain:UTEX 804
          Length = 780

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 235 aaccaaaaataacagcagcg 254
           ||||||||||||||||||||
Sbjct: 370 aaccaaaaataacagcagcg 351


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,964,238
Number of Sequences: 3902068
Number of extensions: 2964238
Number of successful extensions: 54998
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54932
Number of HSP's gapped (non-prelim): 60
length of query: 378
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 356
effective length of database: 17,147,199,772
effective search space: 6104403118832
effective search space used: 6104403118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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