>ROK1_NEUCR (Q7SFC8) ATP-dependent RNA helicase rok-1 (EC 3.6.1.-)|
          Length = 781

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 38  TDEKEEKNSTPRLKRNKKQNMEQDKRTKKKE*PKQIY 148
           T+EK  K    + +  KKQ  E+ K+ KK E  KQIY
Sbjct: 139 TEEKPPKKQKKQKEDRKKQEEEEKKKKKKDEDKKQIY 175

>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7|
           homolog
          Length = 1304

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 44  EKEEKNSTPRLKRNKKQNMEQDKRTKKK 127
           + EE+ S  RLKR +K+  E++KR  KK
Sbjct: 93  DSEEEKSHRRLKRKRKKEREKEKRRSKK 120

>CBF5_KLULA (O13473) Centromere/microtubule-binding protein CBF5|
           (Centromere-binding factor 5) (Small nucleolar RNP
           protein CBF5) (H/ACA snoRNP protein CBF5)
          Length = 474

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 41  DEKEEKNSTPRLKRNKKQNMEQDKRTKKKE 130
           +E +E++ TP  K++KK+  E+  + +KKE
Sbjct: 419 EESKEESKTPEEKKDKKEKKEKKDKKEKKE 448

>CJ084_MOUSE (Q8C6C7) Protein C10orf84 homolog|
          Length = 236

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 50  EEKNSTPRLKRNKKQNMEQDKRTKKKE 130
           E+KNSTPR ++ K++  ++ K   +KE
Sbjct: 92  EQKNSTPRFRQKKRKRSKKGKLKNEKE 118

>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7|
          Length = 1303

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 44  EKEEKNSTPRLKRNKKQNMEQDKRTKKK 127
           + +E+ S  RLKR +K+  E++KR  KK
Sbjct: 93  DSDEEKSHRRLKRKRKKEREKEKRRSKK 120

>NOC2L_MOUSE (Q9WV70) Nucleolar complex protein 2 homolog (NOC2 protein homolog)|
          Length = 747

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 335 CLWRWCRGWEYILIYETNHHLHFLLPQMILNLARLIPFVRHY 210
           CL+ WCR    +   E    L + L Q+I+   +L+P  R Y
Sbjct: 412 CLYLWCRVLSTLGSSEILQPLLYPLSQIIIGCIKLLPTARFY 453

>KSGA_ZYMMO (Q5NMX2) Dimethyladenosine transferase (EC 2.1.1.-)|
           (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (High level
           kasugamycin resistance protein ksgA) (Kasugamycin
           dimethyltransferase)
          Length = 278

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 165 LSFPVYRSIFLSPPTIM 215
           LSFPV+RS F+ PP +M
Sbjct: 182 LSFPVHRSAFVPPPKVM 198

>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1874

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 257  QMILNLARLIPFVRHYCW 204
            Q+     RL+PF+ HYCW
Sbjct: 1113 QLQSETTRLLPFIDHYCW 1130

>CYB_TRYBO (Q33568) Cytochrome b|
          Length = 372

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 335 CLWRWCRGWEYILIYETNHHLHFLLPQMILNLARLIPFVRHY 210
           C W WC  +         H +H  LP ++L L     FV HY
Sbjct: 163 CQWIWCSEFINDFTLLKLHSIHIFLPFVLLFLIGAHFFVLHY 204

>H11_VOLCA (Q08864) Histone H1-I|
          Length = 260

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 35  VTDEKEEKNSTPRLKRNKKQNMEQDKRTKKKE*PKQ 142
           V   K  K    R K+ KK+ +E+ K T K E PK+
Sbjct: 163 VKKTKAPKEKVERPKKEKKEKVEKKKATPKAEKPKK 198

>DPOM_NEUCR (P33537) Probable DNA polymerase (EC 2.7.7.7)|
          Length = 1021

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 159 SYLSFPVYRSIFLSPPTIMPNERN*PS*IKNHLRKKKMKMM 281
           S L+F VYR+IFL       NE N P+ I +   KK+ K +
Sbjct: 548 SALAFLVYRTIFLPNEVEEENETNSPNNILSLFDKKEEKKL 588

>CHS5_YEAST (Q12114) Chitin biosynthesis protein CHS5 (Protein CAL3)|
          Length = 671

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 35  VTDEKEEKNSTPRLKRNKKQNMEQDKRTKKK 127
           V   KE K +T     NKK+N +  K+ KKK
Sbjct: 641 VLSTKEAKKNTGNSNSNKKKNKKNKKKGKKK 671

>PFPC_ENTHI (Q24825) Pore-forming peptide ameobapore C precursor (EH-APP)|
          Length = 101

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 2  YMYVCMFLLCLVTDEKEEKNSTPRL 76
          ++ +C+F+LCL + EK++    P L
Sbjct: 4  FVLLCVFVLCLASQEKQQDREIPVL 28


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,418,422
Number of Sequences: 219361
Number of extensions: 643618
Number of successful extensions: 2240
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2231
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)