ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U29382.1| Caenorhabditis elegans cosmid R03H10, complete sequ... 44 0.41
2gb|AC103613.7| Mus musculus chromosome 14, clone RP24-75B12, com... 44 0.41
3gb|AC161883.6| Mus musculus BAC clone RP23-91K1 from chromosome ... 44 0.41
4gb|AY014380.1| Fejervarya kirtisinghei 16S ribosomal RNA gene, p... 42 1.6
5ref|XM_504954.1| Yarrowia lipolytica CLIB122, YALI0F03575g predi... 42 1.6
6gb|AE011846.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 1.6
7emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 42 1.6
8ref|XM_477166.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
9gb|AY591739.1| Mus musculus clone IgKVk9-111 immunoglobulin kapp... 40 6.3
10gb|AC137753.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
11gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
12gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
13gb|BT025201.1| Drosophila melanogaster FI01114 full insert cDNA 40 6.3
14gb|AC004954.1| Homo sapiens PAC clone RP5-1064B22 from 7, comple... 40 6.3
15emb|CR954256.1| Anopheles gambiae Pen-1 region; BAC clones 30N20... 40 6.3
16gb|AC122322.4| Mus musculus BAC clone RP23-321G20 from chromosom... 40 6.3
17gb|AC137522.11| Medicago truncatula clone mth2-9h8, complete seq... 40 6.3
18emb|Z83848.1|HS57A13 Human DNA sequence from clone RP1-57A13 on ... 40 6.3
19emb|AL137784.14| Human DNA sequence from clone RP1-199J3 on chro... 40 6.3
20emb|BX030031.1|CNS08VC3 Single read from an extremity of a full-... 40 6.3
21gb|AE008873.1| Salmonella typhimurium LT2, section 177 of 220 of... 40 6.3
22gb|AC131949.1| Homo sapiens BAC clone RP11-240J11 from 4, comple... 40 6.3
23ref|NM_206027.1| Drosophila melanogaster jing CG9403-RD, transcr... 40 6.3
24ref|NM_206026.1| Drosophila melanogaster jing CG9403-RC, transcr... 40 6.3
25ref|NM_136371.2| Drosophila melanogaster jing CG9403-RA, transcr... 40 6.3
26gb|AY061438.1| Drosophila melanogaster LD36562 full length cDNA 40 6.3
27gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 6.3
28gb|AF356082.1|AF356082 Drosophila melanogaster C2H2 zinc finger ... 40 6.3
29dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
30dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
31dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
32gb|AC007593.5|AC007593 Drosophila melanogaster, chromosome 2R, r... 40 6.3
33gb|AF285778.1|AF285778 Drosophila melanogaster C2H2 zinc finger ... 40 6.3
34gb|AC064859.6| Homo sapiens BAC clone RP11-329A6 from 2, complet... 40 6.3
35gb|AC084165.1|AC084165 Arabidopsis thaliana chromosome 1 BAC F3C... 40 6.3
36dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.3
37gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.3
38gb|AC104770.10| Homo sapiens chromosome 17, clone RP11-960B9, co... 40 6.3
39dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
40dbj|AK070112.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
41gb|AE003789.5| Drosophila melanogaster chromosome 2R, section 6 ... 40 6.3
42gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
43gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 6.3
44gb|AC140374.3| Mus musculus BAC clone RP24-76K4 from 6, complete... 40 6.3
45dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 6.3
46gb|U41396.1|MMMB414A3 Mus musculus X inactive specific transcrip... 40 6.3
47emb|AJ421479.1| Mus musculus X-inactivation center region; segme... 40 6.3
48emb|X99946.1|MMTSXDNA M.musculus 94kb genomic sequence encoding ... 40 6.3
49emb|AL669964.18| Mouse DNA sequence from clone RP23-11P22 on chr... 40 6.3 
>gb|U29382.1| Caenorhabditis elegans cosmid R03H10, complete sequence
          Length = 35080

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 253  acgaaaacgccaacaaaatgag 274
            ||||||||||||||||||||||
Sbjct: 1558 acgaaaacgccaacaaaatgag 1537
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>gb|AC103613.7| Mus musculus chromosome 14, clone RP24-75B12, complete sequence
          Length = 191158

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Minus

                                           
Query: 17    atttttatatttgagacgtt-cattttcct 45
             |||||||||||||||||||| |||||||||
Sbjct: 31760 atttttatatttgagacgttacattttcct 31731
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>gb|AC161883.6| Mus musculus BAC clone RP23-91K1 from chromosome 14, complete sequence
          Length = 206274

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Minus

                                            
Query: 17     atttttatatttgagacgtt-cattttcct 45
              |||||||||||||||||||| |||||||||
Sbjct: 130673 atttttatatttgagacgttacattttcct 130644
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>gb|AY014380.1| Fejervarya kirtisinghei 16S ribosomal RNA gene, partial sequence;
           mitochondrial gene for mitochondrial product
          Length = 547

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 190 aaaaccagcagacattacataaaaa 214
           |||||||||||||| ||||||||||
Sbjct: 268 aaaaccagcagacagtacataaaaa 244
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>ref|XM_504954.1| Yarrowia lipolytica CLIB122, YALI0F03575g predicted mRNA
          Length = 4161

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 147  ctggcacggcagcagccgccg 167
            |||||||||||||||||||||
Sbjct: 3695 ctggcacggcagcagccgccg 3715
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>gb|AE011846.1| Xanthomonas axonopodis pv. citri str. 306,  section 224 of 469 of the
            complete genome
          Length = 11508

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 322  acgacgacggcggccaccacg 342
            |||||||||||||||||||||
Sbjct: 8843 acgacgacggcggccaccacg 8863
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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 147    ctggcacggcagcagccgccg 167
              |||||||||||||||||||||
Sbjct: 518752 ctggcacggcagcagccgccg 518772
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>ref|XM_477166.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2114

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 415 tccgcggaatcctcctcgtc 434
           ||||||||||||||||||||
Sbjct: 392 tccgcggaatcctcctcgtc 411
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>gb|AY591739.1| Mus musculus clone IgKVk9-111 immunoglobulin kappa-like gene, partial
            sequence
          Length = 3001

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 6    tacatacattcatttttata 25
            ||||||||||||||||||||
Sbjct: 2972 tacatacattcatttttata 2991
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>gb|AC137753.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0084M23,
              complete sequence
          Length = 134180

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     atcagtaattcagtatacat 110
              ||||||||||||||||||||
Sbjct: 115868 atcagtaattcagtatacat 115849
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>gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0009C07, complete sequence
          Length = 148731

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   gccgccgatcgagtccggca 180
             ||||||||||||||||||||
Sbjct: 68306 gccgccgatcgagtccggca 68287
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>gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0038B22, complete sequence
          Length = 177557

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    atcagtaattcagtatacat 110
             ||||||||||||||||||||
Sbjct: 52631 atcagtaattcagtatacat 52612
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>gb|BT025201.1| Drosophila melanogaster FI01114 full insert cDNA
          Length = 4821

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 321  cacgacgacggcggccaccacggc 344
            |||||||||| |||||||||||||
Sbjct: 1518 cacgacgacgacggccaccacggc 1541
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>gb|AC004954.1| Homo sapiens PAC clone RP5-1064B22 from 7, complete sequence
          Length = 86668

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  cagcagacattacataaaaa 214
            ||||||||||||||||||||
Sbjct: 1202 cagcagacattacataaaaa 1183
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>emb|CR954256.1| Anopheles gambiae Pen-1 region; BAC clones 30N20, 10K02, 13E09, 31J16 and
              01G10 from library NotreDame1 of Anopheles gambiae (African
              malaria mosquito) strain PEST
          Length = 447895

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 313    aggtggcacacgacgacggc 332
              ||||||||||||||||||||
Sbjct: 373836 aggtggcacacgacgacggc 373817
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>gb|AC122322.4| Mus musculus BAC clone RP23-321G20 from chromosome 6, complete sequence
          Length = 203073

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     tacatacattcatttttata 25
             ||||||||||||||||||||
Sbjct: 89525 tacatacattcatttttata 89506
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>gb|AC137522.11| Medicago truncatula clone mth2-9h8, complete sequence
          Length = 117720

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    catcagtaattcagtataca 109
             ||||||||||||||||||||
Sbjct: 66857 catcagtaattcagtataca 66838
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>emb|Z83848.1|HS57A13 Human DNA sequence from clone RP1-57A13 on chromosome Xq24 Contains the
             5' end of the GRIA3 gene for glutamate receptor,
             ionotrophic, AMPA 3, the gene for a novel protein and a
             CpG island, complete sequence
          Length = 169693

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    ctccacaacaaggtgtccca 66
             ||||||||||||||||||||
Sbjct: 73688 ctccacaacaaggtgtccca 73669
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>emb|AL137784.14| Human DNA sequence from clone RP1-199J3 on chromosome 6 Contains the 5'
              end of the USP45 gene for ubiquitin specific protease 45, a
              novel gene, the CCNC gene for cyclin C, a 40S ribosomal
              protein RPS3 pseudogene, the 5' end of the PRDM13 gene for
              PR-domain zinc-finger protein 13 and 5 CpG islands,
              complete sequence
          Length = 127413

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     attcatttttatatttgaga 32
              ||||||||||||||||||||
Sbjct: 112784 attcatttttatatttgaga 112765
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>emb|BX030031.1|CNS08VC3 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA44DD09 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 840

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 413 cgtccgcggaatcctcctcg 432
           ||||||||||||||||||||
Sbjct: 143 cgtccgcggaatcctcctcg 162
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>gb|AE008873.1| Salmonella typhimurium LT2, section 177 of 220 of the complete genome
          Length = 21337

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 327   gacggcggccaccacggcga 346
             ||||||||||||||||||||
Sbjct: 19250 gacggcggccaccacggcga 19231
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>gb|AC131949.1| Homo sapiens BAC clone RP11-240J11 from 4, complete sequence
          Length = 65210

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 4     tctacatacattcatttttatatt 27
             |||||||| |||||||||||||||
Sbjct: 30361 tctacatatattcatttttatatt 30384
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>ref|NM_206027.1| Drosophila melanogaster jing CG9403-RD, transcript variant D (jing),
            mRNA
          Length = 4989

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 321  cacgacgacggcggccaccacggc 344
            |||||||||| |||||||||||||
Sbjct: 1696 cacgacgacgacggccaccacggc 1719
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>ref|NM_206026.1| Drosophila melanogaster jing CG9403-RC, transcript variant C (jing),
            mRNA
          Length = 5103

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 321  cacgacgacggcggccaccacggc 344
            |||||||||| |||||||||||||
Sbjct: 1829 cacgacgacgacggccaccacggc 1852
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>ref|NM_136371.2| Drosophila melanogaster jing CG9403-RA, transcript variant A (jing),
            mRNA
          Length = 4810

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 321  cacgacgacggcggccaccacggc 344
            |||||||||| |||||||||||||
Sbjct: 1517 cacgacgacgacggccaccacggc 1540
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>gb|AY061438.1| Drosophila melanogaster LD36562 full length cDNA
          Length = 4821

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 321  cacgacgacggcggccaccacggc 344
            |||||||||| |||||||||||||
Sbjct: 1518 cacgacgacgacggccaccacggc 1541
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 326    cgacggcggccaccacggcg 345
              ||||||||||||||||||||
Sbjct: 646587 cgacggcggccaccacggcg 646568
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>gb|AF356082.1|AF356082 Drosophila melanogaster C2H2 zinc finger transcription factor JING
            (jing) mRNA, complete cds
          Length = 5137

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 321  cacgacgacggcggccaccacggc 344
            |||||||||| |||||||||||||
Sbjct: 1847 cacgacgacgacggccaccacggc 1870
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 91       atcagtaattcagtatacat 110
                ||||||||||||||||||||
Sbjct: 19875638 atcagtaattcagtatacat 19875619
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 415     tccgcggaatcctcctcgtc 434
               ||||||||||||||||||||
Sbjct: 7233672 tccgcggaatcctcctcgtc 7233653
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 161      gccgccgatcgagtccggca 180
                ||||||||||||||||||||
Sbjct: 28914013 gccgccgatcgagtccggca 28913994
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>gb|AC007593.5|AC007593 Drosophila melanogaster, chromosome 2R, region 42E-43A, BAC clone
             BACR01C10, complete sequence
          Length = 173702

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 321   cacgacgacggcggccaccacggc 344
             |||||||||| |||||||||||||
Sbjct: 74110 cacgacgacgacggccaccacggc 74133
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>gb|AF285778.1|AF285778 Drosophila melanogaster C2H2 zinc finger protein (rhumba) mRNA,
            complete cds
          Length = 4461

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 321  cacgacgacggcggccaccacggc 344
            |||||||||| |||||||||||||
Sbjct: 1311 cacgacgacgacggccaccacggc 1334
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>gb|AC064859.6| Homo sapiens BAC clone RP11-329A6 from 2, complete sequence
          Length = 112105

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   agacattacataaaaagaaa 218
             ||||||||||||||||||||
Sbjct: 63971 agacattacataaaaagaaa 63990
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>gb|AC084165.1|AC084165 Arabidopsis thaliana chromosome 1 BAC F3C3 genomic sequence, complete
             sequence
          Length = 90132

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     atacattcatttttatattt 28
             ||||||||||||||||||||
Sbjct: 75477 atacattcatttttatattt 75496
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 321     cacgacgacggcggccaccacggc 344
               ||||||||||||||||||| ||||
Sbjct: 6477955 cacgacgacggcggccaccgcggc 6477932



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 333     ggccaccacggcgaggagcgccgt 356
               ||||||||||||||||||| ||||
Sbjct: 2733133 ggccaccacggcgaggagcaccgt 2733156
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 334     gccaccacggcgaggagcgc 353
               ||||||||||||||||||||
Sbjct: 2121006 gccaccacggcgaggagcgc 2121025
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>gb|AC104770.10| Homo sapiens chromosome 17, clone RP11-960B9, complete sequence
          Length = 188574

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    cttcgagcagcaggtggcac 321
              ||||||||||||||||||||
Sbjct: 149990 cttcgagcagcaggtggcac 150009
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>dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0016A21
          Length = 144076

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 415   tccgcggaatcctcctcgtc 434
             ||||||||||||||||||||
Sbjct: 74156 tccgcggaatcctcctcgtc 74137
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>dbj|AK070112.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041O17, full
           insert sequence
          Length = 2120

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 415 tccgcggaatcctcctcgtc 434
           ||||||||||||||||||||
Sbjct: 398 tccgcggaatcctcctcgtc 417
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>gb|AE003789.5| Drosophila melanogaster chromosome 2R, section 6 of 73 of the complete
              sequence
          Length = 415717

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 321    cacgacgacggcggccaccacggc 344
              |||||||||| |||||||||||||
Sbjct: 360978 cacgacgacgacggccaccacggc 361001
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 91       atcagtaattcagtatacat 110
                ||||||||||||||||||||
Sbjct: 20160543 atcagtaattcagtatacat 20160524
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 366     cttccagctgagcgccgacg 385
               ||||||||||||||||||||
Sbjct: 5724781 cttccagctgagcgccgacg 5724800
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>gb|AC140374.3| Mus musculus BAC clone RP24-76K4 from 6, complete sequence
          Length = 192872

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      tacatacattcatttttata 25
              ||||||||||||||||||||
Sbjct: 151987 tacatacattcatttttata 152006
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 327     gacggcggccaccacggcga 346
               ||||||||||||||||||||
Sbjct: 1423451 gacggcggccaccacggcga 1423432
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>gb|U41396.1|MMMB414A3 Mus musculus X inactive specific transcript (Xist) gene, cosmid
            MB4-14A, fragment 3
          Length = 8233

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 76   aggccggatgagagcatcag 95
            ||||||||||||||||||||
Sbjct: 1799 aggccggatgagagcatcag 1818
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>emb|AJ421479.1| Mus musculus X-inactivation center region; segment 2/3
          Length = 252150

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     aggccggatgagagcatcag 95
              ||||||||||||||||||||
Sbjct: 141773 aggccggatgagagcatcag 141792
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>emb|X99946.1|MMTSXDNA M.musculus 94kb genomic sequence encoding Tsx gene
          Length = 94459

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    aggccggatgagagcatcag 95
             ||||||||||||||||||||
Sbjct: 76893 aggccggatgagagcatcag 76874
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>emb|AL669964.18| Mouse DNA sequence from clone RP23-11P22 on chromosome X, complete
              sequence
          Length = 229724

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     aggccggatgagagcatcag 95
              ||||||||||||||||||||
Sbjct: 141089 aggccggatgagagcatcag 141070


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,705,119
Number of Sequences: 3902068
Number of extensions: 4705119
Number of successful extensions: 98569
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97826
Number of HSP's gapped (non-prelim): 743
length of query: 470
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 448
effective length of database: 17,147,199,772
effective search space: 7681945497856
effective search space used: 7681945497856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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