>RFX1_HUMAN (P22670) MHC class II regulatory factor RFX1 (RFX) (Enhancer factor|
           C) (EF-C)
          Length = 979

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
 Frame = +1

Query: 121 DSATSVSATRP------RLHVRKLQQGLPVPGARRVLVYRPQKPRPG 243
           +S++S +A  P      +L V  +QQ +PV   R V+   PQ P+PG
Sbjct: 214 NSSSSKTAGAPTGTVPQQLQVHGVQQSVPVTQERSVVQATPQAPKPG 260

>CN102_MOUSE (Q80XC6) Protein C14orf102 homolog|
          Length = 1172

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
 Frame = -1

Query: 399 EKNLRLEWFSWPPELRPAELYFQMHLLASQSTAVLA-GPQQRKQQQLVETMQSPGAWLLR 223
           E N R+    W  +L  A + FQ  ++ S     L  G Q++ ++ L   ++   A L R
Sbjct: 322 EFNRRVRENPWDTQLWMAFVAFQDEVMRSPGIYALGEGEQEKHRKSLKLLLEKKLAVLER 381

Query: 222 AIHQNPS-----------CSRYWK 184
           AI  NP            CS +W+
Sbjct: 382 AIESNPGSVELKLAKLQLCSEFWE 405

>7LESS_DROVI (P20806) Protein sevenless (EC 2.7.10.1)|
          Length = 2594

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 390  LRLEWFSWPPELRPAELYFQMHLLASQSTAVLAGPQQRKQQQLVET 253
            L L W + P ELR A +Y+ +H             +Q  Q+Q VET
Sbjct: 1835 LELSWLA-PLELRSASVYYTLHWQLQLEDTEEQSQEQPAQEQRVET 1879

>IAP2_NPVOP (O10324) Probable apoptosis inhibitor 2 (IAP-2)|
          Length = 236

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
 Frame = +2

Query: 74  AKRSTRHKLRYNCVKLI--LLRPSQLQDRGYT--------YASCSKAFQYLEHDGFWCIA 223
           A+R  RH     CV  I  L+    L+ R +         + S ++    L   GF+C+ 
Sbjct: 59  ARRVKRHTYSDTCVSAINALVANESLRKRSFASFKWARRQFGSRAREVDMLSRRGFYCVG 118

Query: 224 LRSHAPGLCIVSTSC 268
            R    G C V T+C
Sbjct: 119 KRLRCAG-CKVVTTC 132

>PCD17_HUMAN (O14917) Protocadherin-17 precursor (Protocadherin-68)|
          Length = 889

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 266 CCCFLCWGPAST 301
           CCCFL W PA T
Sbjct: 6   CCCFLLWAPALT 17

>CTR1_OCTVU (Q7YW31) Cephalotocin receptor 1 (OT/VP superfamily peptide|
           receptor-1) (OC/CE-R 1)
          Length = 397

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 254 VSTSCCCFLCWGPASTAVDWLA 319
           +S   CCF+CW P      W A
Sbjct: 298 LSVVACCFICWSPFFVCQMWAA 319

>GRN_HUMAN (P28799) Granulins precursor (Proepithelin) (PEPI) [Contains:|
           Acrogranin; Paragranulin; Granulin-1 (Granulin G);
           Granulin-2 (Granulin F); Granulin-3 (Granulin B);
           Granulin-4 (Granulin A); Granulin-5 (Granulin C);
           Granulin-6 (Granulin D); Granul
          Length = 593

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +2

Query: 203 DGFWCIALRSHAPGLCIVSTSCCC--FLCWGPASTAVDWLASRCIWK 337
           DG  C  L S   G C +  + CC   L   P  T  D + S+C+ K
Sbjct: 217 DGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDLIQSKCLSK 263

>ZFH1_DROME (P28166) Zinc finger protein 1 (Zinc finger homeodomain protein 1)|
          Length = 1054

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 366 PPELRP---AELYFQMHLLASQSTAVLAGPQQRKQQQLVETMQ 247
           PP+L P   A+       LA QS    + P Q++QQQL +  Q
Sbjct: 191 PPQLPPHLHAQFMAAAASLAMQSARTASSPSQQQQQQLQQQQQ 233

>NOTC2_RAT (Q9QW30) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) [Contains: Notch 2 extracellular truncation; Notch 2
           intracellular domain]
          Length = 2471

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +2

Query: 125 LLRPSQLQDRGYTYASCSKAFQYLEHDGFWCIALRSHAPGLCIVSTSCCCFLCWGPASTA 304
           LL+P+  Q+ G    +C+       + G+ C+ +   +   C  +   C F    P ST 
Sbjct: 303 LLQPNACQNGG----TCTN-----RNGGYGCVCVNGWSGDDCSENIDDCAFASCTPGSTC 353

Query: 305 VDWLAS-RCIWK*SSAG 352
           +D +AS  C+     AG
Sbjct: 354 IDRVASFSCLCPEGKAG 370

>KCNAB_DROME (P17970) Potassium voltage-gated channel protein Shab|
          Length = 985

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +3

Query: 306 STGSPAGAFGSRARQAAVLGAKRTTRGEGS 395
           S G PAGA GS A   A  GA  T  G G+
Sbjct: 146 SAGLPAGAVGSGAGAGAGAGASVTGSGSGA 175

>EPCR_BOVIN (Q28105) Endothelial protein C receptor precursor (Endothelial cell|
           protein C receptor) (Activated protein C receptor) (APC
           receptor)
          Length = 241

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 306 TAVLAGPQQRKQQQLVETMQSPGAWLLRAIHQNPSCSRYWKALLQLAYV 160
           T VL GP +    Q ++ +Q P +W L  I+ N    RY +  + L  V
Sbjct: 57  THVLEGPGRNVSIQQLQPLQEPDSWALTKIYLN----RYLEEFVGLVQV 101

>BNK_DROME (P40794) Protein bottleneck|
          Length = 303

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 52  QSTSWAHSKEVYTTQITLQLR*TDSATSVSATRPRLH 162
           Q T  +  K  +T+Q+ ++L  T+    +S  RP+LH
Sbjct: 48  QPTITSTPKPRFTSQLAVELAKTEPGNGISPLRPKLH 84

>POLG_KUNJM (P14335) Genome polyprotein [Contains: Capsid protein C (Core|
           protein); Envelope protein M (Matrix protein); Major
           envelope protein E; Nonstructural protein 1 (NS1);
           Nonstructural protein 2A (NS2A); Flavivirin protease
           NS2B regulatory subunit;
          Length = 3433

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 128 LRPSQLQDRGYTYASCSKAFQYL 196
           ++  +LQ +G TY  CSKAF++L
Sbjct: 580 VKMEKLQLKGTTYGVCSKAFRFL 602

>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (hN2) [Contains: Notch 2 extracellular truncation;
           Notch 2 intracellular domain]
          Length = 2471

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +2

Query: 125 LLRPSQLQDRGYTYASCSKAFQYLEHDGFWCIALRSHAPGLCIVSTSCCCFLCWGPASTA 304
           LL+P+  Q+ G    +C+       + G+ C+ +   +   C  +   C F    P ST 
Sbjct: 303 LLQPNACQNGG----TCAN-----RNGGYGCVCVNGWSGDDCSENIDDCAFASCTPGSTC 353

Query: 305 VDWLAS 322
           +D +AS
Sbjct: 354 IDRVAS 359


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,968,858
Number of Sequences: 219361
Number of extensions: 975607
Number of successful extensions: 3304
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3302
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)