Clone Name | rbastl04c07 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197633.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0082M15.22), mRNA Length = 3246 Score = 79.8 bits (40), Expect = 6e-12 Identities = 73/84 (86%) Strand = Plus / Minus Query: 317 gccagcaggtgcatttggaagtagagctcggcaggccgcagttctgggggccaagagaac 376 ||||| || ||||| ||||| |||||||| ||||||| || |||||||||||| |||||| Sbjct: 3101 gccagaagatgcatctggaaatagagctcagcaggcctcaattctgggggccatgagaac 3042 Query: 377 cactcgaggcgaaggttcttctcc 400 ||||| || |||||||| |||||| Sbjct: 3041 cactctagacgaaggtttttctcc 3018 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 186 tccagtacctggagcacgacgggttctggtgtatcgccctcagaagccac 235 |||||||||| ||||||||||||||| ||||||||||||| ||||||||| Sbjct: 3217 tccagtacctagagcacgacgggttcaggtgtatcgccctgagaagccac 3168
>dbj|AK103617.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133L07, full insert sequence Length = 3864 Score = 79.8 bits (40), Expect = 6e-12 Identities = 73/84 (86%) Strand = Plus / Minus Query: 317 gccagcaggtgcatttggaagtagagctcggcaggccgcagttctgggggccaagagaac 376 ||||| || ||||| ||||| |||||||| ||||||| || |||||||||||| |||||| Sbjct: 3543 gccagaagatgcatctggaaatagagctcagcaggcctcaattctgggggccatgagaac 3484 Query: 377 cactcgaggcgaaggttcttctcc 400 ||||| || |||||||| |||||| Sbjct: 3483 cactctagacgaaggtttttctcc 3460 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 186 tccagtacctggagcacgacgggttctggtgtatcgccctcagaagccac 235 |||||||||| ||||||||||||||| ||||||||||||| ||||||||| Sbjct: 3659 tccagtacctagagcacgacgggttcaggtgtatcgccctgagaagccac 3610
>dbj|AK066542.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069N05, full insert sequence Length = 2734 Score = 79.8 bits (40), Expect = 6e-12 Identities = 73/84 (86%) Strand = Plus / Minus Query: 317 gccagcaggtgcatttggaagtagagctcggcaggccgcagttctgggggccaagagaac 376 ||||| || ||||| ||||| |||||||| ||||||| || |||||||||||| |||||| Sbjct: 2448 gccagaagatgcatctggaaatagagctcagcaggcctcaattctgggggccatgagaac 2389 Query: 377 cactcgaggcgaaggttcttctcc 400 ||||| || |||||||| |||||| Sbjct: 2388 cactctagacgaaggtttttctcc 2365 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 186 tccagtacctggagcacgacgggttctggtgtatcgccctcagaagccac 235 |||||||||| ||||||||||||||| ||||||||||||| ||||||||| Sbjct: 2564 tccagtacctagagcacgacgggttcaggtgtatcgccctgagaagccac 2515
>dbj|AK062557.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-H02, full insert sequence Length = 2018 Score = 79.8 bits (40), Expect = 6e-12 Identities = 73/84 (86%) Strand = Plus / Minus Query: 317 gccagcaggtgcatttggaagtagagctcggcaggccgcagttctgggggccaagagaac 376 ||||| || ||||| ||||| |||||||| ||||||| || |||||||||||| |||||| Sbjct: 1557 gccagaagatgcatctggaaatagagctcagcaggcctcaattctgggggccatgagaac 1498 Query: 377 cactcgaggcgaaggttcttctcc 400 ||||| || |||||||| |||||| Sbjct: 1497 cactctagacgaaggtttttctcc 1474 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 186 tccagtacctggagcacgacgggttctggtgtatcgccctcagaagccac 235 |||||||||| ||||||||||||||| ||||||||||||| ||||||||| Sbjct: 1673 tccagtacctagagcacgacgggttcaggtgtatcgccctgagaagccac 1624
>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete sequence Length = 158550 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 186 tccagtacctggagcacgacgggttctggtgtatcgccctcagaagccac 235 |||||||||| ||||||||||||||| ||||||||||||| ||||||||| Sbjct: 137342 tccagtacctagagcacgacgggttcaggtgtatcgccctgagaagccac 137293 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Minus Query: 360 ctgggggccaagagaaccactcgaggcgaaggttcttctcc 400 |||||||||| ||||||||||| || |||||||| |||||| Sbjct: 137103 ctgggggccatgagaaccactctagacgaaggtttttctcc 137063
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Plus Query: 186 tccagtacctggagcacgacgggttctggtgtatcgccctcagaagccac 235 |||||||||| ||||||||||||||| ||||||||||||| ||||||||| Sbjct: 20927049 tccagtacctagagcacgacgggttcaggtgtatcgccctgagaagccac 20927098 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 360 ctgggggccaagagaaccactcgaggcgaaggttcttctcc 400 |||||||||| ||||||||||| || |||||||| |||||| Sbjct: 20927288 ctgggggccatgagaaccactctagacgaaggtttttctcc 20927328
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Plus Query: 186 tccagtacctggagcacgacgggttctggtgtatcgccctcagaagccac 235 |||||||||| ||||||||||||||| ||||||||||||| ||||||||| Sbjct: 20938313 tccagtacctagagcacgacgggttcaggtgtatcgccctgagaagccac 20938362 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 360 ctgggggccaagagaaccactcgaggcgaaggttcttctcc 400 |||||||||| ||||||||||| || |||||||| |||||| Sbjct: 20938552 ctgggggccatgagaaccactctagacgaaggtttttctcc 20938592
>gb|L26049.2|CREODA11X Chlamydomonas reinhardtii dynein heavy chain alpha (ODA11) gene, complete cds Length = 17941 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Plus Query: 246 tctgcatcgtctccaccagctgctgct 272 ||||||| ||||||||||||||||||| Sbjct: 2610 tctgcatggtctccaccagctgctgct 2636
>ref|NM_001036455.1| Arabidopsis thaliana GRF9; protein phosphorylated amino acid binding AT2G42590 (GRF9) transcript variant AT2G42590.2 mRNA, complete cds Length = 1244 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 244 actctgcatcgtctccaccagc 265 |||||||||||||||||||||| Sbjct: 979 actctgcatcgtctccaccagc 958
>ref|NM_129820.2| Arabidopsis thaliana GRF9; protein phosphorylated amino acid binding AT2G42590 (GRF9) transcript variant AT2G42590.1 mRNA, complete cds Length = 1247 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 244 actctgcatcgtctccaccagc 265 |||||||||||||||||||||| Sbjct: 982 actctgcatcgtctccaccagc 961
>gb|U60444.3|ATU60444 Arabidopsis thaliana 14-3-3 protein isoform GF14 mu mRNA, complete cds Length = 1103 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 244 actctgcatcgtctccaccagc 265 |||||||||||||||||||||| Sbjct: 849 actctgcatcgtctccaccagc 828
>ref|XM_422263.1| PREDICTED: Gallus gallus similar to KIAA0605 gene product (LOC424420), mRNA Length = 5210 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 255 tctccaccagctgctgctgcttcctc 280 ||||||||| |||||||||||||||| Sbjct: 3032 tctccaccaactgctgctgcttcctc 3007
>ref|XM_815553.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein (MASP) (Tc00.1047053506599.330) partial mRNA Length = 1281 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 264 gctgctgctgcttcctctgctg 285 |||||||||||||||||||||| Sbjct: 941 gctgctgctgcttcctctgctg 920
>emb|CR376789.4| Zebrafish DNA sequence from clone DKEYP-87A2 in linkage group 6, complete sequence Length = 190610 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1 agagggaaatgttagaaagaaa 22 |||||||||||||||||||||| Sbjct: 47057 agagggaaatgttagaaagaaa 47078
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 308 gactggctcgccagcaggtgca 329 |||||||||||||||||||||| Sbjct: 1312731 gactggctcgccagcaggtgca 1312752
>gb|AY128764.1| Arabidopsis thaliana 14-3-3 regulatory protein (At2g42590) mRNA, complete cds Length = 968 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 244 actctgcatcgtctccaccagc 265 |||||||||||||||||||||| Sbjct: 790 actctgcatcgtctccaccagc 769
>gb|AF460525.1| Homo sapiens sequence b4b18 immunoglobulin heavy chain variable region gene, partial cds Length = 186 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 260 accagctgctgctgcttcctct 281 |||||||||||||||||||||| Sbjct: 163 accagctgctgctgcttcctct 142
>gb|AY093076.1| Arabidopsis thaliana 14-3-3 regulatory protein (At2g42590) mRNA, complete cds Length = 1189 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 244 actctgcatcgtctccaccagc 265 |||||||||||||||||||||| Sbjct: 980 actctgcatcgtctccaccagc 959
>emb|BX820533.1|CNS0A9JA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH45ZD06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1071 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 244 actctgcatcgtctccaccagc 265 |||||||||||||||||||||| Sbjct: 879 actctgcatcgtctccaccagc 858
>emb|BX818869.1|CNS0A9TI Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB21ZD02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1178 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 244 actctgcatcgtctccaccagc 265 |||||||||||||||||||||| Sbjct: 960 actctgcatcgtctccaccagc 939
>gb|AY085927.1| Arabidopsis thaliana clone 19749 mRNA, complete sequence Length = 1214 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 244 actctgcatcgtctccaccagc 265 |||||||||||||||||||||| Sbjct: 982 actctgcatcgtctccaccagc 961
>emb|AL645789.14| Zebrafish DNA sequence from clone RP71-11B17 in linkage group 22, complete sequence Length = 167635 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 264 gctgctgctgcttcctctgctg 285 |||||||||||||||||||||| Sbjct: 36133 gctgctgctgcttcctctgctg 36112
>dbj|AB011545.1| Arabidopsis thaliana mRNA for GF14 mu, complete cds Length = 1120 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 244 actctgcatcgtctccaccagc 265 |||||||||||||||||||||| Sbjct: 883 actctgcatcgtctccaccagc 862
>ref|NM_001036456.1| Arabidopsis thaliana GRF9; protein phosphorylated amino acid binding AT2G42590 (GRF9) transcript variant AT2G42590.3 mRNA, complete cds Length = 1332 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 ctctgcatcgtctccaccagc 265 ||||||||||||||||||||| Sbjct: 981 ctctgcatcgtctccaccagc 961
>ref|XM_447747.1| Candida glabrata CBS138, CAGL0J00803g partial mRNA Length = 3945 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 265 ctgctgctgcttcctctgctg 285 ||||||||||||||||||||| Sbjct: 1270 ctgctgctgcttcctctgctg 1250
>gb|AC131116.3| Mus musculus BAC clone RP24-344M21 from chromosome 7, complete sequence Length = 190325 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 tcatgggctcatagcaaagag 81 ||||||||||||||||||||| Sbjct: 119632 tcatgggctcatagcaaagag 119612
>emb|CR380956.1| Candida glabrata strain CBS138 chromosome J complete sequence Length = 1192501 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 265 ctgctgctgcttcctctgctg 285 ||||||||||||||||||||| Sbjct: 86158 ctgctgctgcttcctctgctg 86178
>emb|BX324121.9| Zebrafish DNA sequence from clone DKEY-164J20 in linkage group 25, complete sequence Length = 181165 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 14 agaaagaaactatgtttacaacaac 38 ||||||||||||||||| ||||||| Sbjct: 133438 agaaagaaactatgtttgcaacaac 133462
>dbj|AK092650.1| Homo sapiens cDNA FLJ35331 fis, clone PROST2014659 Length = 3194 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 tcgtctccaccagctgctgct 272 ||||||||||||||||||||| Sbjct: 1819 tcgtctccaccagctgctgct 1839
>emb|CR605890.1| full-length cDNA clone CS0DA012YP15 of Neuroblastoma of Homo sapiens (human) Length = 1941 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 agctgcagcaaggccttccag 190 ||||||||||||||||||||| Sbjct: 1896 agctgcagcaaggccttccag 1876
>gb|AC007087.7| Arabidopsis thaliana chromosome 2 clone F14N22 map mi551, complete sequence Length = 96685 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 ctctgcatcgtctccaccagc 265 ||||||||||||||||||||| Sbjct: 53620 ctctgcatcgtctccaccagc 53600
>gb|AY054165.1| Arabidopsis thaliana At2g42590/F14N22.14 mRNA, complete cds Length = 1548 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 ctctgcatcgtctccaccagc 265 ||||||||||||||||||||| Sbjct: 1248 ctctgcatcgtctccaccagc 1228
>gb|AC002472.8| Homo sapiens Chromosome 22q11.2 PAC Clone p_n5 In BCRL2-GGT Region, complete sequence Length = 147086 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 agctgcagcaaggccttccag 190 ||||||||||||||||||||| Sbjct: 43298 agctgcagcaaggccttccag 43318
>gb|AC002470.17| Homo sapiens Chromosome 22q11.2 BAC Clone b135h6 In BCRL2-GGT Region, complete sequence Length = 235395 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 agctgcagcaaggccttccag 190 ||||||||||||||||||||| Sbjct: 234827 agctgcagcaaggccttccag 234847
>gb|AF133300.2|AF133300 Mus musculus MOR 3'Beta1, MOR 3'Beta2, MOR 3'Beta3, and MOR 3'Beta4 genes, complete cds; Cbx3 pseudogene, complete sequence; and MOR 3'Beta5 and MOR 3'Beta6 genes, complete cds Length = 92000 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 tcatgggctcatagcaaagag 81 ||||||||||||||||||||| Sbjct: 7 tcatgggctcatagcaaagag 27
>gb|AF145301.1|AF145301 Arabidopsis thaliana 14-3-3 protein GF14 mu (GRF9) gene, complete cds Length = 3604 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 ctctgcatcgtctccaccagc 265 ||||||||||||||||||||| Sbjct: 2577 ctctgcatcgtctccaccagc 2557
>emb|AL953857.7| Zebrafish DNA sequence from clone CH211-127M7, complete sequence Length = 175586 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 14 agaaagaaactatgtttacaacaac 38 ||||||||||||||||| ||||||| Sbjct: 171350 agaaagaaactatgtttgcaacaac 171374
>gb|AC161178.16| Mus musculus chromosome 1, clone RP23-9F16, complete sequence Length = 216182 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 cagctgctgctgcttcctct 281 |||||||||||||||||||| Sbjct: 180278 cagctgctgctgcttcctct 180259
>ref|XM_482127.1| Oryza sativa (japonica cultivar-group), mRNA Length = 387 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 ccaccagctgctgctgcttc 277 |||||||||||||||||||| Sbjct: 52 ccaccagctgctgctgcttc 33
>gb|AC013255.5| Drosophila melanogaster clone BACR27A22, complete sequence Length = 148414 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 gaaagaaactatgtttacaa 34 |||||||||||||||||||| Sbjct: 15140 gaaagaaactatgtttacaa 15159
>gb|AC009843.9| Drosophila melanogaster clone BACR01G11, complete sequence Length = 192819 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 gaaagaaactatgtttacaa 34 |||||||||||||||||||| Sbjct: 34994 gaaagaaactatgtttacaa 34975
>gb|AY666071.1| Nephila pilipes clone NP-RTPD08 dragline silk spidroin 1 mRNA, partial cds Length = 819 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 ctccaccagctgctgctgct 275 |||||||||||||||||||| Sbjct: 301 ctccaccagctgctgctgct 282
>gb|AY666070.1| Nephila pilipes clone NP-RTPD03 dragline silk spidroin 1 mRNA, partial cds Length = 731 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 ctccaccagctgctgctgct 275 |||||||||||||||||||| Sbjct: 229 ctccaccagctgctgctgct 210
>gb|AY666069.1| Nephila pilipes clone NP-RTPD01 dragline silk spidroin 1 mRNA, partial cds Length = 728 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 ctccaccagctgctgctgct 275 |||||||||||||||||||| Sbjct: 229 ctccaccagctgctgctgct 210
>gb|BC103771.1| Mus musculus RIKEN cDNA 7420416P09 gene, mRNA (cDNA clone MGC:117755 IMAGE:30935479), complete cds Length = 3054 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 ctgcttcctctgctgggggc 290 |||||||||||||||||||| Sbjct: 2809 ctgcttcctctgctgggggc 2828
>gb|AC009911.11| Drosophila melanogaster clone BACR01N17, complete sequence Length = 170190 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tgctgctgcttcctctgctg 285 |||||||||||||||||||| Sbjct: 141930 tgctgctgcttcctctgctg 141949
>gb|AC099020.2| Drosophila melanogaster clone BACR30H01, complete sequence Length = 155557 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tgctgctgcttcctctgctg 285 |||||||||||||||||||| Sbjct: 57453 tgctgctgcttcctctgctg 57472
>gb|AC120791.13| Mus musculus chromosome 7, clone RP23-56I4, complete sequence Length = 246249 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 gctgctgctgcttcctctgc 283 |||||||||||||||||||| Sbjct: 90050 gctgctgctgcttcctctgc 90069
>ref|XM_610880.2| PREDICTED: Bos taurus similar to ADAM metallopeptidase domain 21 preproprotein (LOC532366), mRNA Length = 2157 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 actatgtttacaacaacaaataca 45 |||||||| ||||||||||||||| Sbjct: 719 actatgttgacaacaacaaataca 696
>ref|NM_001033776.1| Mus musculus RIKEN cDNA 7420416P09 gene (7420416P09Rik), mRNA Length = 3054 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 ctgcttcctctgctgggggc 290 |||||||||||||||||||| Sbjct: 2809 ctgcttcctctgctgggggc 2828
>gb|DQ379381.1| Latrodectus hesperus major ampullate spidroin 1 gene, partial cds Length = 705 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 ctccaccagctgctgctgct 275 |||||||||||||||||||| Sbjct: 568 ctccaccagctgctgctgct 549
>gb|AC159641.2| Mus musculus BAC clone RP23-465F1 from chromosome 12, complete sequence Length = 176949 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 ctgcttcctctgctgggggc 290 |||||||||||||||||||| Sbjct: 95444 ctgcttcctctgctgggggc 95425
>ref|XM_801426.1| Trypanosoma cruzi strain CL Brener trans-sialidase (Tc00.1047053508481.10) partial mRNA Length = 2739 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 ctgctgctgcttcctctgctgggg 288 ||||||||||||| |||||||||| Sbjct: 2692 ctgctgctgcttcttctgctgggg 2715
>ref|XM_803301.1| Trypanosoma cruzi strain CL Brener trans-sialidase (Tc00.1047053511547.20) partial mRNA Length = 2739 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 ctgctgctgcttcctctgctgggg 288 ||||||||||||| |||||||||| Sbjct: 2692 ctgctgctgcttcttctgctgggg 2715
>gb|AC125059.4| Mus musculus BAC clone RP23-404P13 from chromosome 19, complete sequence Length = 189613 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 atgttagaaagaaactatgt 28 |||||||||||||||||||| Sbjct: 75553 atgttagaaagaaactatgt 75572
>emb|CR974413.1| M.murinus DNA sequence from clone CH257-4B4, complete sequence Length = 270722 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 ctgctgcttcctctgctggg 287 |||||||||||||||||||| Sbjct: 90183 ctgctgcttcctctgctggg 90164
>emb|AL359740.24| Human DNA sequence from clone RP13-204A15 on chromosome X Contains a Np95-like ring finger protein (NIRF) pseudogene, a DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide pseudogene, a makorin ring finger protein, 1 (MKRN1) pseudogene and two CpG islands, complete sequence Length = 98104 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 264 gctgctgctgcttcctctgctggg 287 ||||||||||||||| |||||||| Sbjct: 14465 gctgctgctgcttccactgctggg 14488
>gb|AC159230.2| Mus musculus BAC clone RP24-378I19 from chromosome 13, complete sequence Length = 190521 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 aaatgttagaaagaaactat 26 |||||||||||||||||||| Sbjct: 73636 aaatgttagaaagaaactat 73655
>dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, complete sequence Length = 1857073 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 actatgtttacaacaacaaataca 45 ||||||||| |||||||||||||| Sbjct: 1191266 actatgttttcaacaacaaataca 1191289
>dbj|AK135789.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420416P09 product:hypothetical protein, full insert sequence Length = 1597 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 ctgcttcctctgctgggggc 290 |||||||||||||||||||| Sbjct: 1411 ctgcttcctctgctgggggc 1430
>ref|XM_679280.1| PREDICTED: Danio rerio similar to microtubule associated serine/threonine kinase 2 (LOC556464), mRNA Length = 5427 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 262 cagctgctgctgcttcctctgctg 285 |||||||||||||| ||||||||| Sbjct: 4889 cagctgctgctgctgcctctgctg 4912
>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III, complete sequence Length = 907057 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ccagctgctgctgcttcctc 280 |||||||||||||||||||| Sbjct: 50244 ccagctgctgctgcttcctc 50225
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 ctccaccagctgctgctgct 275 |||||||||||||||||||| Sbjct: 17534515 ctccaccagctgctgctgct 17534534
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 ccaccagctgctgctgcttc 277 |||||||||||||||||||| Sbjct: 18018978 ccaccagctgctgctgcttc 18018959
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 tagaaagaaactatgtttacaaca 36 ||||||||||||||||||| |||| Sbjct: 352492 tagaaagaaactatgtttaaaaca 352515
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 agggaaatgttagaaagaaa 22 |||||||||||||||||||| Sbjct: 3567612 agggaaatgttagaaagaaa 3567631
>ref|NM_001015470.1| Drosophila melanogaster CG40298-PA.3 (CG40298), mRNA Length = 1080 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 gaaagaaactatgtttacaa 34 |||||||||||||||||||| Sbjct: 274 gaaagaaactatgtttacaa 293
>dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1276_B06 Length = 175174 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 agggaaatgttagaaagaaa 22 |||||||||||||||||||| Sbjct: 135680 agggaaatgttagaaagaaa 135699
>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0644B06 Length = 194509 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 tagaaagaaactatgtttacaaca 36 ||||||||||||||||||| |||| Sbjct: 62445 tagaaagaaactatgtttaaaaca 62468
>dbj|AP005755.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0019B14 Length = 127570 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 ctccaccagctgctgctgct 275 |||||||||||||||||||| Sbjct: 98693 ctccaccagctgctgctgct 98712
>emb|BX004984.6| Zebrafish DNA sequence from clone DKEY-3N4, complete sequence Length = 264738 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 262 cagctgctgctgcttcctctgctg 285 |||||||||||||| ||||||||| Sbjct: 120316 cagctgctgctgctgcctctgctg 120339
>dbj|AP005489.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0013H03 Length = 152998 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 ccaccagctgctgctgcttc 277 |||||||||||||||||||| Sbjct: 104013 ccaccagctgctgctgcttc 103994
>ref|XM_313332.2| Anopheles gambiae str. PEST ENSANGP00000011295 (ENSANGG00000008806), partial mRNA Length = 5529 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 ctccaccagctgctgctgct 275 |||||||||||||||||||| Sbjct: 1728 ctccaccagctgctgctgct 1709
>gb|AF149233.1|CLRHII2 Columba livia RH2 opsin (rhs) gene, exons 2 through 5 and complete cds Length = 1819 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 gctgggggcctgccagcaccgcag 305 |||||||| ||||||||||||||| Sbjct: 1450 gctggggggctgccagcaccgcag 1473
>ref|NM_208579.1| Eremothecium gossypii ACL178Cp (ACL178C), mRNA Length = 930 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 ccagctgctgctgcttcctc 280 |||||||||||||||||||| Sbjct: 832 ccagctgctgctgcttcctc 851
>gb|AC005642.10|AC005642 Drosophila melanogaster, chromosome 2L, region 38A1-38A2, P1 clone DS02396, complete sequence Length = 56849 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tgctgctgcttcctctgctg 285 |||||||||||||||||||| Sbjct: 19226 tgctgctgcttcctctgctg 19245
>gb|AE003663.4| Drosophila melanogaster chromosome 2L, section 72 of 83 of the complete sequence Length = 290667 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 tgctgctgcttcctctgctg 285 |||||||||||||||||||| Sbjct: 185125 tgctgctgcttcctctgctg 185106
>gb|AE002665.5| Drosophila melanogaster chromosome 3L, section 83 of 83 of the complete sequence Length = 491220 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 gaaagaaactatgtttacaa 34 |||||||||||||||||||| Sbjct: 386094 gaaagaaactatgtttacaa 386113
>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence Length = 1844853 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 actatgtttacaacaacaaataca 45 ||||||||| |||||||||||||| Sbjct: 567125 actatgttttcaacaacaaataca 567148
>gb|AY288492.1| Lepus granatensis immunoglobulin heavy chain variable region (IgVH) mRNA, Lg19 84 allotype, partial cds Length = 287 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 gtctccaccagctgctgctg 273 |||||||||||||||||||| Sbjct: 20 gtctccaccagctgctgctg 1
>gb|AY288488.1| Lepus granatensis immunoglobulin heavy chain variable region (IgVH) mRNA, Lg15 668 allotype, partial cds Length = 287 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 gtctccaccagctgctgctg 273 |||||||||||||||||||| Sbjct: 20 gtctccaccagctgctgctg 1
>emb|CT030156.9| Mouse DNA sequence from clone RP23-191J8 on chromosome 13, complete sequence Length = 189564 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 aaatgttagaaagaaactat 26 |||||||||||||||||||| Sbjct: 86968 aaatgttagaaagaaactat 86949
>gb|DQ059134.1|DQ059133S2 Latrodectus geometricus major ampullate spidroin 1-like gene, partial cds Length = 2722 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 ctccaccagctgctgctgct 275 |||||||||||||||||||| Sbjct: 64 ctccaccagctgctgctgct 45
>dbj|AP005795.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1090H08 Length = 200720 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 ccaccagctgctgctgcttc 277 |||||||||||||||||||| Sbjct: 22774 ccaccagctgctgctgcttc 22755
>emb|AL591544.30| Mouse DNA sequence from clone RP23-386D6 on chromosome 11, complete sequence Length = 201673 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 gctgctgctgcttcctctgc 283 |||||||||||||||||||| Sbjct: 142604 gctgctgctgcttcctctgc 142585
>dbj|D88268.1| Homo sapiens immunoglobulin lambda gene locus DNA, clone:47H9 Length = 44553 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 tgcttcctctgctgggggcctgcc 295 |||||||||||||| ||||||||| Sbjct: 2026 tgcttcctctgctgtgggcctgcc 2003
>dbj|D87012.1| Homo sapiens immunoglobulin lambda gene locus DNA, clone:61D6 Length = 40083 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 tgcttcctctgctgggggcctgcc 295 |||||||||||||| ||||||||| Sbjct: 31652 tgcttcctctgctgtgggcctgcc 31629
>dbj|D87008.1| Homo sapiens immunoglobulin lambda gene locus DNA, clone:47H9 upstream contig Length = 30965 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 tgcttcctctgctgggggcctgcc 295 |||||||||||||| ||||||||| Sbjct: 2026 tgcttcctctgctgtgggcctgcc 2003 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,855,898 Number of Sequences: 3902068 Number of extensions: 3855898 Number of successful extensions: 84355 Number of sequences better than 10.0: 88 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83983 Number of HSP's gapped (non-prelim): 371 length of query: 405 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 383 effective length of database: 17,147,199,772 effective search space: 6567377512676 effective search space used: 6567377512676 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)