ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl04c04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_549980.1| Oryza sativa (japonica cultivar-group), mRNA Length = 411 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 238 cttgcacgcgggggcgcactccgtcacctcgtccaggcagcggcacgtcggcgg 291 |||||||||| |||||||||| |||||||||||| ||||||||| |||||||| Sbjct: 309 cttgcacgcgtcggcgcactccttcacctcgtccatgcagcggcaggtcggcgg 256
>emb|AJ277469.1|OSA277469 Oryza sativa rbbi3-3 gene for rice Bowman Birk trypsin inhibitor Length = 4624 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 238 cttgcacgcgggggcgcactccgtcacctcgtccaggcagcggcacgtcggcgg 291 |||||||||| |||||||||| |||||||||||| ||||||||| |||||||| Sbjct: 3345 cttgcacgcgtcggcgcactccttcacctcgtccatgcagcggcaggtcggcgg 3292
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 238 cttgcacgcgggggcgcactccgtcacctcgtccaggcagcggcacgtcggcgg 291 |||||||||| |||||||||| |||||||||||| ||||||||| |||||||| Sbjct: 1353084 cttgcacgcgtcggcgcactccttcacctcgtccatgcagcggcaggtcggcgg 1353137 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 238 cttgcacgcgggggcgcactccgtcacctcgtccaggcagcggcacgtcggcgg 291 ||||||||||| |||||||| |||||||||||| ||||||||| |||||||| Sbjct: 1347044 cttgcacgcggcggcgcacttgttcacctcgtccatgcagcggcaggtcggcgg 1347097 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 261 tcacctcgtccaggcagcggcacgtcggcggaaaggacttggtgcacacggcg 313 |||||| |||| |||||| |||||||||||| | ||| | |||||||||||| Sbjct: 1515298 tcaccttgtcctggcagctgcacgtcggcggcatcgaccttgtgcacacggcg 1515246
>dbj|AP003233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0037C04 Length = 137879 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 238 cttgcacgcgggggcgcactccgtcacctcgtccaggcagcggcacgtcggcgg 291 |||||||||| |||||||||| |||||||||||| ||||||||| |||||||| Sbjct: 51135 cttgcacgcgtcggcgcactccttcacctcgtccatgcagcggcaggtcggcgg 51188 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 238 cttgcacgcgggggcgcactccgtcacctcgtccaggcagcggcacgtcggcgg 291 ||||||||||| |||||||| |||||||||||| ||||||||| |||||||| Sbjct: 45095 cttgcacgcggcggcgcacttgttcacctcgtccatgcagcggcaggtcggcgg 45148
>dbj|AB098712.1| Oryza sativa (japonica cultivar-group) ti mRNA for trypsin inhibitor, complete cds Length = 1061 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 238 cttgcacgcgggggcgcactccgtcacctcgtccaggcagcggcacgtcggcgg 291 |||||||||| |||||||||| |||||||||||| ||||||||| |||||||| Sbjct: 668 cttgcacgcgtcggcgcactccttcacctcgtccatgcagcggcaggtcggcgg 615
>gb|U57640.1|OSU57640 Oryza sativa Bowman-Birk type trypsin inhibitor mRNA, complete cds Length = 855 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 238 cttgcacgcgggggcgcactccgtcacctcgtccaggcagcggcacgtcggcgg 291 |||||||||| |||||||||| |||||||||||| ||||||||| |||||||| Sbjct: 450 cttgcacgcgtcggcgcactccttcacctcgtccatgcagcggcaggtcggcgg 397
>gb|U76004.1|OSU76004 Oryza sativa Bowman-Birk proteinase inhibitor mRNA, complete cds Length = 1050 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 238 cttgcacgcgggggcgcactccgtcacctcgtccaggcagcggcacgtcggcgg 291 |||||||||| |||||||||| |||||||||||| ||||||||| |||||||| Sbjct: 645 cttgcacgcgtcggcgcactccttcacctcgtccatgcagcggcaggtcggcgg 592
>dbj|AP002909.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0044F08 Length = 141528 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 238 cttgcacgcgggggcgcactccgtcacctcgtccaggcagcggcacgtcggcgg 291 |||||||||| |||||||||| |||||||||||| ||||||||| |||||||| Sbjct: 2705 cttgcacgcgtcggcgcactccttcacctcgtccatgcagcggcaggtcggcgg 2758
>ref|XM_549978.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1047 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 238 cttgcacgcgggggcgcactccgtcacctcgtccaggcagcggcacgtcggcgg 291 ||||||||||| |||||||| |||||||||||| ||||||||| |||||||| Sbjct: 680 cttgcacgcggcggcgcacttgttcacctcgtccatgcagcggcaggtcggcgg 627
>emb|AJ277468.1|OSA277468 Oryza sativa rbbi3-1 gene for putative Bowman Birk trypsin inhibitor Length = 17385 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 238 cttgcacgcgggggcgcactccgtcacctcgtccaggcagcggcacgtcggcgg 291 ||||||||||| |||||||| |||||||||||| ||||||||| |||||||| Sbjct: 4185 cttgcacgcggcggcgcacttgttcacctcgtccatgcagcggcaggtcggcgg 4132
>dbj|AP003046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0445D12 Length = 140952 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 238 cttgcacgcgggggcgcactccgtcacctcgtccaggcagcggcacgtcggcgg 291 ||||||||||| |||||||| |||||||||||| ||||||||| |||||||| Sbjct: 140698 cttgcacgcggcggcgcacttgttcacctcgtccatgcagcggcaggtcggcgg 140751
>dbj|AK104367.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-D09, full insert sequence Length = 1059 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 238 cttgcacgcgggggcgcactccgtcacctcgtccaggcagcggcacgtcggcgg 291 ||||||||||| |||||||| |||||||||||| ||||||||| |||||||| Sbjct: 680 cttgcacgcggcggcgcacttgttcacctcgtccatgcagcggcaggtcggcgg 627
>dbj|AK104110.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-G03, full insert sequence Length = 1047 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 238 cttgcacgcgggggcgcactccgtcacctcgtccaggcagcggcacgtcggcgg 291 ||||||||||| |||||||| |||||||||||| ||||||||| |||||||| Sbjct: 680 cttgcacgcggcggcgcacttgttcacctcgtccatgcagcggcaggtcggcgg 627
>dbj|AK067257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096H09, full insert sequence Length = 1072 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 238 cttgcacgcgggggcgcactccgtcacctcgtccaggcagcggcacgtcggcgg 291 ||||||||||| |||||||| |||||||||||| ||||||||| |||||||| Sbjct: 678 cttgcacgcggcggcgcacttgttcacctcgtccatgcagcggcaggtcggcgg 625
>dbj|AK106083.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-A10, full insert sequence Length = 1331 Score = 46.1 bits (23), Expect = 0.097 Identities = 29/31 (93%) Strand = Plus / Plus Query: 130 gccggcggggacgtcgtcgtcatccttgccg 160 ||||||| ||||||||||||||||| ||||| Sbjct: 482 gccggcgtggacgtcgtcgtcatccctgccg 512
>ref|NM_184202.2| Oryza sativa (japonica cultivar-group), mRNA Length = 876 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 261 tcacctcgtccaggcagcggcacgtcggcggaaaggacttggtgcacacggcg 313 |||||| |||| |||||| |||||||||||| | ||| | |||||||||||| Sbjct: 460 tcaccttgtcctggcagctgcacgtcggcggcatcgaccttgtgcacacggcg 408
>ref|XM_507398.1| PREDICTED Oryza sativa (japonica cultivar-group), P0011H09.138 mRNA Length = 1480 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 130 gccggcggggacgtcgtcgtcatcc 154 ||||||| ||||||||||||||||| Sbjct: 631 gccggcgtggacgtcgtcgtcatcc 655
>ref|XM_507397.1| PREDICTED Oryza sativa (japonica cultivar-group), P0011H09.138 mRNA Length = 1834 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 130 gccggcggggacgtcgtcgtcatcc 154 ||||||| ||||||||||||||||| Sbjct: 985 gccggcgtggacgtcgtcgtcatcc 1009
>ref|NM_193082.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1331 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 130 gccggcggggacgtcgtcgtcatcc 154 ||||||| ||||||||||||||||| Sbjct: 482 gccggcgtggacgtcgtcgtcatcc 506
>ref|XM_506491.2| PREDICTED Oryza sativa (japonica cultivar-group), P0011H09.138 mRNA Length = 1611 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 130 gccggcggggacgtcgtcgtcatcc 154 ||||||| ||||||||||||||||| Sbjct: 518 gccggcgtggacgtcgtcgtcatcc 542
>emb|CR710637.2|CNS0GBA1 Tetraodon nigroviridis full-length cDNA Length = 575 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 318 tgcagcacgcccacggcctctcctc 342 |||||||||||||||||| |||||| Sbjct: 396 tgcagcacgcccacggccactcctc 420
>emb|CR676386.2|CNS0FKV2 Tetraodon nigroviridis full-length cDNA Length = 835 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 318 tgcagcacgcccacggcctctcctc 342 |||||||||||||||||| |||||| Sbjct: 421 tgcagcacgcccacggccactcctc 445
>emb|CR648444.2|CNS0EZB6 Tetraodon nigroviridis full-length cDNA Length = 810 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 318 tgcagcacgcccacggcctctcctc 342 |||||||||||||||||| |||||| Sbjct: 428 tgcagcacgcccacggccactcctc 452
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 ggcggggacgtcgtcgtcatc 153 ||||||||||||||||||||| Sbjct: 4712377 ggcggggacgtcgtcgtcatc 4712357
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 130 gccggcggggacgtcgtcgtcatcc 154 ||||||| ||||||||||||||||| Sbjct: 26101338 gccggcgtggacgtcgtcgtcatcc 26101314
>dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0011H09 Length = 147992 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 130 gccggcggggacgtcgtcgtcatcc 154 ||||||| ||||||||||||||||| Sbjct: 134900 gccggcgtggacgtcgtcgtcatcc 134876
>dbj|AP002860.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0409B08 Length = 134673 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 261 tcacctcgtccaggcagcggcacgtcggcggaaaggacttggtgcacacggcg 313 |||||| |||| |||||| |||||||||||| | ||| | |||||||||||| Sbjct: 80946 tcaccttgtcctggcagctgcacgtcggcggcatcgaccttgtgcacacggcg 80894
>dbj|AK105455.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-D07, full insert sequence Length = 876 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 261 tcacctcgtccaggcagcggcacgtcggcggaaaggacttggtgcacacggcg 313 |||||| |||| |||||| |||||||||||| | ||| | |||||||||||| Sbjct: 460 tcaccttgtcctggcagctgcacgtcggcggcatcgaccttgtgcacacggcg 408
>dbj|AK102138.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033085I16, full insert sequence Length = 879 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 261 tcacctcgtccaggcagcggcacgtcggcggaaaggacttggtgcacacggcg 313 |||||| |||| |||||| |||||||||||| | ||| | |||||||||||| Sbjct: 463 tcaccttgtcctggcagctgcacgtcggcggcatcgaccttgtgcacacggcg 411
>dbj|AK071297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084J02, full insert sequence Length = 1611 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 130 gccggcggggacgtcgtcgtcatcc 154 ||||||| ||||||||||||||||| Sbjct: 517 gccggcgtggacgtcgtcgtcatcc 541
>dbj|AK068064.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130E16, full insert sequence Length = 1834 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 130 gccggcggggacgtcgtcgtcatcc 154 ||||||| ||||||||||||||||| Sbjct: 985 gccggcgtggacgtcgtcgtcatcc 1009
>dbj|AK059570.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A01, full insert sequence Length = 1480 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 130 gccggcggggacgtcgtcgtcatcc 154 ||||||| ||||||||||||||||| Sbjct: 631 gccggcgtggacgtcgtcgtcatcc 655
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 ggcggggacgtcgtcgtcatc 153 ||||||||||||||||||||| Sbjct: 4712358 ggcggggacgtcgtcgtcatc 4712338
>emb|AL713946.3|CNS07YPP Oryza sativa chromosome 12, . BAC OJ1005_B07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161762 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 133 ggcggggacgtcgtcgtcatc 153 ||||||||||||||||||||| Sbjct: 134754 ggcggggacgtcgtcgtcatc 134774
>emb|AL928750.3|CNS08CBN Oryza sativa chromosome 12, . BAC OSJNBa0063C08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 147355 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 133 ggcggggacgtcgtcgtcatc 153 ||||||||||||||||||||| Sbjct: 39750 ggcggggacgtcgtcgtcatc 39770
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 cgcactccgtcacctcgtcc 271 |||||||||||||||||||| Sbjct: 2105577 cgcactccgtcacctcgtcc 2105596
>gb|AC092140.4| Homo sapiens chromosome 16 clone RP11-413H22, complete sequence Length = 193188 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 taaacattaagaccagagaa 82 |||||||||||||||||||| Sbjct: 130269 taaacattaagaccagagaa 130250
>gb|BC049287.1| Xenopus laevis procollagen, type I, alpha 2, mRNA (cDNA clone MGC:52958 IMAGE:4930434), complete cds Length = 4428 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aagaccagagaaaccaagag 90 |||||||||||||||||||| Sbjct: 2677 aagaccagagaaaccaagag 2658
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 cgtggtactggtcgttgcag 199 |||||||||||||||||||| Sbjct: 1405151 cgtggtactggtcgttgcag 1405132 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 cgtggtactggtcgttgcag 388 |||||||||||||||||||| Sbjct: 1405151 cgtggtactggtcgttgcag 1405132
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 381 cgttgcagacgtggcggttcgggt 404 ||||| |||||||||||||||||| Sbjct: 3155901 cgttgtagacgtggcggttcgggt 3155924 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,403,705 Number of Sequences: 3902068 Number of extensions: 2403705 Number of successful extensions: 41960 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41627 Number of HSP's gapped (non-prelim): 333 length of query: 444 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 422 effective length of database: 17,147,199,772 effective search space: 7236118303784 effective search space used: 7236118303784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
