ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04c01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_185079.1| Oryza sativa (japonica cultivar-group), mRNA 127 3e-26
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 127 3e-26
3gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genom... 127 3e-26
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
5gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genom... 127 3e-26
6dbj|AK066131.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 3e-26
7dbj|AK065839.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 3e-26
8ref|NM_201648.1| Homo sapiens glycine-N-acyltransferase (GLYAT),... 44 0.39
9emb|CR860949.1| Pongo pygmaeus mRNA; cDNA DKFZp469D1931 (from cl... 44 0.39
10emb|CR857113.1| Pongo pygmaeus mRNA; cDNA DKFZp469B0232 (from cl... 44 0.39
11gb|DP000062.1| Sus scrofa target 117 genomic scaffold 44 0.39
12gb|AC021393.10| Homo sapiens chromosome 8, clone RP11-27P7, comp... 44 0.39
13dbj|AP000445.5| Homo sapiens genomic DNA, chromosome 11q, clone:... 44 0.39
14gb|AC110175.14| Mus musculus chromosome 12, clone RP23-124B21, c... 42 1.5
15emb|CT010432.7| Mouse DNA sequence from clone RP23-337G13 on chr... 42 1.5
16emb|AL022353.1|HS352E11 Human DNA sequence from clone CTA-352E11... 42 1.5
17gb|AC140197.4| Mus musculus BAC clone RP23-253A22 from chromosom... 40 6.0
18gb|AF301237.4| Homo sapiens chromosome 8 clone CTD-2547A9 map q1... 40 6.0
19emb|AL138957.13| Human DNA sequence from clone RP11-203P2 on chr... 40 6.0
20gb|AC105082.6| Homo sapiens chromosome 8, clone CTD-2547A9, comp... 40 6.0
21dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
22gb|AC084522.1|CBRG19L07 Caenorhabditis briggsae cosmid G19L07, c... 40 6.0
23dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
24dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
25gb|AC149599.3| Mus musculus BAC clone RP23-193A3 from 18, comple... 40 6.0
26gb|AC155287.6| Mus musculus 6 BAC RP23-103G18 (Roswell Park Canc... 40 6.0
27gb|AC153592.3| Mus musculus 6 BAC RP23-20C15 (Roswell Park Cance... 40 6.0 
>ref|NM_185079.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2661

 Score =  127 bits (64), Expect = 3e-26
 Identities = 127/148 (85%)
 Strand = Plus / Minus

                                                                        
Query: 300  tcagcaaccatttcatcaaccaaggattctagcaactctgctgttatgtcttttgcagct 359
            ||||||||||||||||| | ||||||  | |||||||||| ||| |||||  |  ||| |
Sbjct: 2630 tcagcaaccatttcatcgatcaaggaaccaagcaactctgttgtaatgtcaatgccagat 2571

                                                                        
Query: 360  tcatgtgactctgtcttgaagtcgacccagctcccgagaggaccactcatttctttgtac 419
            || | ||||||   |||||| || ||||||||||| ||||||| ||||||||||||||||
Sbjct: 2570 tcgtatgactccaacttgaaatctacccagctccccagaggactactcatttctttgtac 2511

                                        
Query: 420  acgagttcatccaccatccactcctcag 447
            ||||||||||||||||||||||||||||
Sbjct: 2510 acgagttcatccaccatccactcctcag 2483
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  127 bits (64), Expect = 3e-26
 Identities = 127/148 (85%)
 Strand = Plus / Minus

                                                                            
Query: 300      tcagcaaccatttcatcaaccaaggattctagcaactctgctgttatgtcttttgcagct 359
                ||||||||||||||||| | ||||||  | |||||||||| ||| |||||  |  ||| |
Sbjct: 34633227 tcagcaaccatttcatcgatcaaggaaccaagcaactctgttgtaatgtcaatgccagat 34633168

                                                                            
Query: 360      tcatgtgactctgtcttgaagtcgacccagctcccgagaggaccactcatttctttgtac 419
                || | ||||||   |||||| || ||||||||||| ||||||| ||||||||||||||||
Sbjct: 34633167 tcgtatgactccaacttgaaatctacccagctccccagaggactactcatttctttgtac 34633108

                                            
Query: 420      acgagttcatccaccatccactcctcag 447
                ||||||||||||||||||||||||||||
Sbjct: 34633107 acgagttcatccaccatccactcctcag 34633080
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>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete
             sequence
          Length = 164236

 Score =  127 bits (64), Expect = 3e-26
 Identities = 127/148 (85%)
 Strand = Plus / Minus

                                                                         
Query: 300   tcagcaaccatttcatcaaccaaggattctagcaactctgctgttatgtcttttgcagct 359
             ||||||||||||||||| | ||||||  | |||||||||| ||| |||||  |  ||| |
Sbjct: 90944 tcagcaaccatttcatcgatcaaggaaccaagcaactctgttgtaatgtcaatgccagat 90885

                                                                         
Query: 360   tcatgtgactctgtcttgaagtcgacccagctcccgagaggaccactcatttctttgtac 419
             || | ||||||   |||||| || ||||||||||| ||||||| ||||||||||||||||
Sbjct: 90884 tcgtatgactccaacttgaaatctacccagctccccagaggactactcatttctttgtac 90825

                                         
Query: 420   acgagttcatccaccatccactcctcag 447
             ||||||||||||||||||||||||||||
Sbjct: 90824 acgagttcatccaccatccactcctcag 90797
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  127 bits (64), Expect = 3e-26
 Identities = 127/148 (85%)
 Strand = Plus / Minus

                                                                            
Query: 300      tcagcaaccatttcatcaaccaaggattctagcaactctgctgttatgtcttttgcagct 359
                ||||||||||||||||| | ||||||  | |||||||||| ||| |||||  |  ||| |
Sbjct: 34723299 tcagcaaccatttcatcgatcaaggaaccaagcaactctgttgtaatgtcaatgccagat 34723240

                                                                            
Query: 360      tcatgtgactctgtcttgaagtcgacccagctcccgagaggaccactcatttctttgtac 419
                || | ||||||   |||||| || ||||||||||| ||||||| ||||||||||||||||
Sbjct: 34723239 tcgtatgactccaacttgaaatctacccagctccccagaggactactcatttctttgtac 34723180

                                            
Query: 420      acgagttcatccaccatccactcctcag 447
                ||||||||||||||||||||||||||||
Sbjct: 34723179 acgagttcatccaccatccactcctcag 34723152
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>gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete
             sequence
          Length = 129302

 Score =  127 bits (64), Expect = 3e-26
 Identities = 127/148 (85%)
 Strand = Plus / Plus

                                                                         
Query: 300   tcagcaaccatttcatcaaccaaggattctagcaactctgctgttatgtcttttgcagct 359
             ||||||||||||||||| | ||||||  | |||||||||| ||| |||||  |  ||| |
Sbjct: 10106 tcagcaaccatttcatcgatcaaggaaccaagcaactctgttgtaatgtcaatgccagat 10165

                                                                         
Query: 360   tcatgtgactctgtcttgaagtcgacccagctcccgagaggaccactcatttctttgtac 419
             || | ||||||   |||||| || ||||||||||| ||||||| ||||||||||||||||
Sbjct: 10166 tcgtatgactccaacttgaaatctacccagctccccagaggactactcatttctttgtac 10225

                                         
Query: 420   acgagttcatccaccatccactcctcag 447
             ||||||||||||||||||||||||||||
Sbjct: 10226 acgagttcatccaccatccactcctcag 10253
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>dbj|AK066131.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052G24, full
            insert sequence
          Length = 3143

 Score =  127 bits (64), Expect = 3e-26
 Identities = 127/148 (85%)
 Strand = Plus / Minus

                                                                        
Query: 300  tcagcaaccatttcatcaaccaaggattctagcaactctgctgttatgtcttttgcagct 359
            ||||||||||||||||| | ||||||  | |||||||||| ||| |||||  |  ||| |
Sbjct: 2908 tcagcaaccatttcatcgatcaaggaaccaagcaactctgttgtaatgtcaatgccagat 2849

                                                                        
Query: 360  tcatgtgactctgtcttgaagtcgacccagctcccgagaggaccactcatttctttgtac 419
            || | ||||||   |||||| || ||||||||||| ||||||| ||||||||||||||||
Sbjct: 2848 tcgtatgactccaacttgaaatctacccagctccccagaggactactcatttctttgtac 2789

                                        
Query: 420  acgagttcatccaccatccactcctcag 447
            ||||||||||||||||||||||||||||
Sbjct: 2788 acgagttcatccaccatccactcctcag 2761
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>dbj|AK065839.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013038J01, full
            insert sequence
          Length = 1844

 Score =  127 bits (64), Expect = 3e-26
 Identities = 127/148 (85%)
 Strand = Plus / Minus

                                                                        
Query: 300  tcagcaaccatttcatcaaccaaggattctagcaactctgctgttatgtcttttgcagct 359
            ||||||||||||||||| | ||||||  | |||||||||| ||| |||||  |  ||| |
Sbjct: 1660 tcagcaaccatttcatcgatcaaggaaccaagcaactctgttgtaatgtcaatgccagat 1601

                                                                        
Query: 360  tcatgtgactctgtcttgaagtcgacccagctcccgagaggaccactcatttctttgtac 419
            || | ||||||   |||||| || ||||||||||| ||||||| ||||||||||||||||
Sbjct: 1600 tcgtatgactccaacttgaaatctacccagctccccagaggactactcatttctttgtac 1541

                                        
Query: 420  acgagttcatccaccatccactcctcag 447
            ||||||||||||||||||||||||||||
Sbjct: 1540 acgagttcatccaccatccactcctcag 1513
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>ref|NM_201648.1| Homo sapiens glycine-N-acyltransferase (GLYAT), nuclear gene encoding
            mitochondrial protein, transcript variant 1, mRNA
          Length = 2068

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 425  ttcatccaccatccactcctca 446
            ||||||||||||||||||||||
Sbjct: 1117 ttcatccaccatccactcctca 1096
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>emb|CR860949.1| Pongo pygmaeus mRNA; cDNA DKFZp469D1931 (from clone DKFZp469D1931)
          Length = 1765

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 425  ttcatccaccatccactcctca 446
            ||||||||||||||||||||||
Sbjct: 1113 ttcatccaccatccactcctca 1092
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>emb|CR857113.1| Pongo pygmaeus mRNA; cDNA DKFZp469B0232 (from clone DKFZp469B0232)
          Length = 1738

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 425  ttcatccaccatccactcctca 446
            ||||||||||||||||||||||
Sbjct: 1087 ttcatccaccatccactcctca 1066
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>gb|DP000062.1| Sus scrofa target 117 genomic scaffold
          Length = 605739

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 4      agcagtacagtttgcaaaggacaaaa 29
              ||||||||||| ||||||||||||||
Sbjct: 440321 agcagtacagtatgcaaaggacaaaa 440346
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>gb|AC021393.10| Homo sapiens chromosome 8, clone RP11-27P7, complete sequence
          Length = 150858

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 254   agaaaaatgcacaataattgca 275
             ||||||||||||||||||||||
Sbjct: 59963 agaaaaatgcacaataattgca 59984
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>dbj|AP000445.5| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-78H16, complete
             sequences
          Length = 125356

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 425   ttcatccaccatccactcctca 446
             ||||||||||||||||||||||
Sbjct: 64939 ttcatccaccatccactcctca 64960
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>gb|AC110175.14| Mus musculus chromosome 12, clone RP23-124B21, complete sequence
          Length = 242870

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 122    ttacaatgccttgctattttc 142
              |||||||||||||||||||||
Sbjct: 240390 ttacaatgccttgctattttc 240410
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>emb|CT010432.7| Mouse DNA sequence from clone RP23-337G13 on chromosome 12, complete
             sequence
          Length = 207186

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 122   ttacaatgccttgctattttc 142
             |||||||||||||||||||||
Sbjct: 56511 ttacaatgccttgctattttc 56491
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>emb|AL022353.1|HS352E11 Human DNA sequence from clone CTA-352E11 on chromosome 22q13.1-13.31
            Contains GSSs, complete sequence
          Length = 21533

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 346  tgtcttttgcagcttcatgtg 366
            |||||||||||||||||||||
Sbjct: 2575 tgtcttttgcagcttcatgtg 2555
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>gb|AC140197.4| Mus musculus BAC clone RP23-253A22 from chromosome 18, complete sequence
          Length = 192563

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 274    catgaccaaactaccaatat 293
              ||||||||||||||||||||
Sbjct: 171752 catgaccaaactaccaatat 171771
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>gb|AF301237.4| Homo sapiens chromosome 8 clone CTD-2547A9 map q13.3, complete sequence
          Length = 169842

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 350   ttttgcagcttcatgtgactctgtcttg 377
             |||| |||||||||||||| ||||||||
Sbjct: 69463 tttttcagcttcatgtgacgctgtcttg 69490
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>emb|AL138957.13| Human DNA sequence from clone RP11-203P2 on chromosome 13 Contains two
              novel genes, complete sequence
          Length = 173315

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     ccacattgtacaacatacag 72
              ||||||||||||||||||||
Sbjct: 158771 ccacattgtacaacatacag 158790
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>gb|AC105082.6| Homo sapiens chromosome 8, clone CTD-2547A9, complete sequence
          Length = 169845

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 350   ttttgcagcttcatgtgactctgtcttg 377
             |||| |||||||||||||| ||||||||
Sbjct: 69464 tttttcagcttcatgtgacgctgtcttg 69491
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 9        tacagtttgcaaaggacaaaacaccatt 36
                |||||||||||||| ||| |||||||||
Sbjct: 33842943 tacagtttgcaaagcacataacaccatt 33842970
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>gb|AC084522.1|CBRG19L07 Caenorhabditis briggsae cosmid G19L07, complete sequence
          Length = 34433

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   caaaaaaggtaaagaatgga 188
             ||||||||||||||||||||
Sbjct: 18568 caaaaaaggtaaagaatgga 18549
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>dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1695_H09
          Length = 114721

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 9     tacagtttgcaaaggacaaaacaccatt 36
             |||||||||||||| ||| |||||||||
Sbjct: 59521 tacagtttgcaaagcacataacaccatt 59548
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>dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1004_E04
          Length = 133621

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 9    tacagtttgcaaaggacaaaacaccatt 36
            |||||||||||||| ||| |||||||||
Sbjct: 1906 tacagtttgcaaagcacataacaccatt 1933
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>gb|AC149599.3| Mus musculus BAC clone RP23-193A3 from 18, complete sequence
          Length = 208349

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 274    catgaccaaactaccaatat 293
              ||||||||||||||||||||
Sbjct: 107977 catgaccaaactaccaatat 107996
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>gb|AC155287.6| Mus musculus 6 BAC RP23-103G18 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 221335

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   ttcatgtgactctgtcttga 378
             ||||||||||||||||||||
Sbjct: 44291 ttcatgtgactctgtcttga 44272
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>gb|AC153592.3| Mus musculus 6 BAC RP23-20C15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 195726

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 359   ttcatgtgactctgtcttga 378
             ||||||||||||||||||||
Sbjct: 44150 ttcatgtgactctgtcttga 44169


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,161,556
Number of Sequences: 3902068
Number of extensions: 4161556
Number of successful extensions: 80544
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80374
Number of HSP's gapped (non-prelim): 170
length of query: 447
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 425
effective length of database: 17,147,199,772
effective search space: 7287559903100
effective search space used: 7287559903100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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