ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1K125_ARATH (P82266) Probable 125 kDa kinesin-related protein 37 0.034
2K125_TOBAC (O23826) 125 kDa kinesin-related protein 33 0.49
3Y4BM_RHISN (P55380) Putative insertion sequence ATP-binding prot... 30 4.1
4JHD1_CAEBR (Q60V67) JmjC domain-containing histone demethylation... 29 5.4
5CISY_CANTR (P79024) Citrate synthase, mitochondrial precursor (E... 29 7.1
6YCT3_SCHPO (O59813) Putative amino-acid permease C794.03 28 9.2

>K125_ARATH (P82266) Probable 125 kDa kinesin-related protein|
          Length = 1056

 Score = 36.6 bits (83), Expect = 0.034
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
 Frame = -1

Query: 461  EKTLE------------ISGNANRSLGDDYKVDEPTCSTPRRRQVNIPSCQSIEGL-VTP 321
            EKTLE            I   A  +    Y   EPT +TP + +  IP+  +IE L   P
Sbjct: 914  EKTLESFQQDQCCQARCIEDKAQETFQQQYMEYEPTGATPTKNEPEIPTKATIESLRAMP 973

Query: 320  LEDLVKSFRDSRTPSKLVAGNAKRLDLAIEMERVPLTTI 204
            +E LV+ FR++ +         K   L     R PL+ +
Sbjct: 974  IETLVEEFRENNSYESFATKETKPQQLT----RSPLSQL 1008



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>K125_TOBAC (O23826) 125 kDa kinesin-related protein|
          Length = 1006

 Score = 32.7 bits (73), Expect = 0.49
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = -1

Query: 467  HREKTLEISGNANRSLGDDYKVDEPTCSTPRRRQVNIPSCQSIEGL-VTPLEDLVKSFRD 291
            H  ++  I   A  +    Y   EPT +TP R + ++PS  +IE L   P+E L++ FR+
Sbjct: 920  HCMQSTSIEQIALETFQQKYMDYEPTGATPIRSEPDVPSKVTIESLRAMPMEVLLEEFRE 979

Query: 290  SRT 282
            + +
Sbjct: 980  NNS 982



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>Y4BM_RHISN (P55380) Putative insertion sequence ATP-binding protein|
           y4bM/y4kI/y4tA
          Length = 263

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -2

Query: 379 QEGARLTSPAANRSRAW*LH-----WKTSSSHSGTAELRRNSWLG 260
           +E   LT+P  ++ +A  L      W+  +  SGT EL R+ WLG
Sbjct: 2   KEARMLTNPTLDQMQALGLTGMAAAWRELTEQSGTNELSRDEWLG 46



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>JHD1_CAEBR (Q60V67) JmjC domain-containing histone demethylation protein 1 (EC|
           1.14.11.-)
          Length = 1063

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -1

Query: 383 TPRRRQVNIPSCQSIEGLVTPLEDLVKS 300
           TPR ++ N+ +  S+E  +TPLEDLV S
Sbjct: 78  TPRDQRKNLYNVLSLEYSLTPLEDLVNS 105



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>CISY_CANTR (P79024) Citrate synthase, mitochondrial precursor (EC 2.3.3.1)|
          Length = 467

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -3

Query: 396 TNLFNTKKAPG*HPQLPIDRGLGNSTGRPR 307
           T LF   +A G  PQL +DRGLG    RP+
Sbjct: 421 TVLFGVSRAFGVLPQLILDRGLGMPIERPK 450



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>YCT3_SCHPO (O59813) Putative amino-acid permease C794.03|
          Length = 554

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 256 AFPATSFDGVLLSRNDLTRSSSGVTKPSIDWQLGMLTWRL 375
           A+ A +F  + LSRND  +S   + K S  +QL    W L
Sbjct: 431 AYAAVAFGRLFLSRNDFPKSEWSLGKLSKPFQLITFLWNL 470


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,821,043
Number of Sequences: 219361
Number of extensions: 1436264
Number of successful extensions: 3720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3719
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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